Wall clock time and date at job start Mon Mar 30 2020 01:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46950 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47074 * 119.99839 * 8 6 4 11 11 H 1.48505 * 109.46997 * 239.99833 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.50694 * 109.47033 * 293.95020 * 12 2 1 14 14 C 1.41004 * 126.70744 * 94.99955 * 13 12 2 15 15 C 1.36825 * 103.88784 * 179.97438 * 14 13 12 16 16 C 1.47834 * 126.92915 * 180.02562 * 15 14 13 17 17 C 1.39565 * 120.14302 * 359.71495 * 16 15 14 18 18 C 1.37962 * 119.85301 * 179.77214 * 17 16 15 19 19 C 1.38362 * 120.14547 * 0.51169 * 18 17 16 20 20 C 1.38349 * 120.28516 * 359.74466 * 19 18 17 21 21 C 1.37963 * 120.15091 * 359.97438 * 20 19 18 22 22 O 1.34504 * 106.14529 * 359.97438 * 15 14 13 23 23 N 1.20901 * 111.44767 * 359.74845 * 22 15 14 24 24 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 25 25 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 27 27 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 28 28 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 29 29 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 31 31 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 32 32 H 1.08008 * 128.05489 * 359.97034 * 14 13 12 33 33 H 1.08004 * 120.07387 * 0.02892 * 17 16 15 34 34 H 1.07999 * 119.92755 * 180.27943 * 18 17 16 35 35 H 1.07996 * 119.85479 * 179.76691 * 19 18 17 36 36 H 1.08004 * 119.92612 * 180.02562 * 20 19 18 37 37 H 1.07993 * 120.07516 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 0.8157 3.2441 3.9915 10 1 2.8249 4.5945 3.8430 11 1 0.7549 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1377 13 6 1.6370 -2.2204 -0.9729 14 6 0.5214 -2.8814 -1.5267 15 6 0.6513 -4.1702 -1.0861 16 6 -0.2549 -5.3025 -1.3727 17 6 -1.3872 -5.1106 -2.1658 18 6 -2.2263 -6.1725 -2.4334 19 6 -1.9531 -7.4233 -1.9087 20 6 -0.8353 -7.6190 -1.1174 21 6 0.0151 -6.5668 -0.8469 22 8 1.7704 -4.1996 -0.3405 23 7 2.3007 -3.1140 -0.2962 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 3.0797 1.3445 -0.1083 28 1 1.5610 1.9274 -0.8309 29 1 2.9857 4.9183 0.7765 30 1 1.5611 -0.3871 -2.0628 31 1 3.0797 -0.6610 -1.1757 32 1 -0.2549 -2.4669 -2.1529 33 1 -1.6038 -4.1338 -2.5726 34 1 -3.1004 -6.0263 -3.0506 35 1 -2.6152 -8.2504 -2.1181 36 1 -0.6274 -8.5979 -0.7112 37 1 0.8876 -6.7211 -0.2295 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267907520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:11 Heat of formation + Delta-G solvation = 71.479574 kcal Electronic energy + Delta-G solvation = -19559.018762 eV Core-core repulsion = 16496.841626 eV Total energy + Delta-G solvation = -3062.177136 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.94068 -39.96511 -38.63432 -35.41868 -34.46114 -34.00193 -31.88588 -30.46066 -29.70485 -28.63588 -26.10069 -24.76146 -24.08111 -22.88084 -22.60717 -20.80619 -18.98881 -18.70119 -18.45275 -17.26266 -16.88965 -16.60429 -16.01455 -15.89764 -15.75251 -15.37777 -14.78632 -14.36469 -14.25838 -14.03432 -13.89238 -13.68648 -13.41564 -13.08670 -12.78501 -12.67831 -12.39482 -12.31609 -12.14984 -11.97458 -11.84567 -11.42098 -11.25171 -11.12177 -10.64623 -9.89778 -9.31761 -9.12729 -8.23667 -6.33735 -0.33978 0.47088 0.90742 1.31696 1.39132 1.40394 1.53932 2.02703 2.38633 2.90100 3.08085 3.09004 3.27387 3.49150 3.91428 4.05099 4.06754 4.18029 4.25446 4.31371 4.45182 4.50301 4.53492 4.59877 4.67207 4.75471 4.91266 4.99831 5.03350 5.11427 5.13339 5.22825 5.50116 5.51960 5.58423 5.60384 5.98318 6.00977 6.23157 6.49936 6.81013 7.28800 7.35773 8.87736 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.037880 B = 0.003185 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.006079 B = 8789.035097 C = 8921.732460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.550 5.550 3 C 0.209 3.791 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.933 5.933 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.278 1.278 11 H -0.274 1.274 12 C 0.130 3.870 13 C 0.028 3.972 14 C -0.210 4.210 15 C 0.008 3.992 16 C -0.043 4.043 17 C -0.097 4.097 18 C -0.120 4.120 19 C -0.105 4.105 20 C -0.122 4.122 21 C -0.109 4.109 22 O 0.101 5.899 23 N -0.381 5.381 24 H 0.025 0.975 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.004 0.996 28 H -0.025 1.025 29 H 0.266 0.734 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.198 0.802 33 H 0.140 0.860 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.813 -23.240 -8.120 27.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.276 5.276 3 C 0.083 3.917 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.573 5.573 8 Si 0.795 3.205 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.200 1.200 12 C 0.001 3.999 13 C -0.130 4.130 14 C -0.231 4.231 15 C -0.056 4.056 16 C -0.044 4.044 17 C -0.115 4.115 18 C -0.138 4.138 19 C -0.123 4.123 20 C -0.140 4.140 21 C -0.128 4.128 22 O 0.032 5.968 23 N -0.084 5.084 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.022 0.978 28 H -0.007 1.007 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.215 0.785 33 H 0.158 0.842 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.415 -23.232 -7.000 26.404 hybrid contribution -0.425 1.557 -0.387 1.659 sum -10.840 -21.675 -7.388 25.336 Atomic orbital electron populations 1.22197 0.86978 1.00661 1.00626 1.61955 1.08860 1.15778 1.40984 1.19419 0.93779 0.82880 0.95635 1.21447 1.35070 0.97517 1.02305 0.92227 1.25898 0.94915 0.97946 1.00754 1.70079 1.39193 1.11935 1.36103 0.85319 0.78106 0.78221 0.78873 1.19010 1.20408 1.19967 1.20298 1.00473 0.85568 0.93529 1.23378 0.94568 0.97358 0.97684 1.22800 1.01442 0.92025 1.06835 1.22951 0.90243 0.96171 0.96216 1.17783 0.94500 0.89992 1.02171 1.21380 0.92559 1.01009 0.96595 1.21444 0.99963 0.92277 1.00119 1.21749 0.96926 0.98118 0.95507 1.21422 0.94586 0.99385 0.98596 1.21489 1.00392 0.91923 0.98961 1.84877 1.31203 1.26777 1.53926 1.73822 1.21521 0.92287 1.20803 0.95653 0.91302 0.92426 0.97784 1.00691 0.92541 0.91414 0.90907 0.78508 0.84190 0.82713 0.82789 0.83180 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.73 9.17 127.69 1.17 2.90 16 2 N -0.55 -25.29 4.74 -931.65 -4.42 -29.71 16 3 C 0.21 11.44 4.72 85.56 0.40 11.84 16 4 C -0.53 -30.63 8.52 25.60 0.22 -30.41 16 5 H 0.06 3.46 7.10 -2.91 -0.02 3.44 16 6 C 0.00 0.18 5.46 84.65 0.46 0.64 16 7 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 8 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 C 0.13 5.03 5.55 85.55 0.47 5.50 16 13 C 0.03 0.97 6.00 43.47 0.26 1.23 16 14 C -0.21 -5.67 9.44 22.62 0.21 -5.45 16 15 C 0.01 0.20 7.16 24.48 0.18 0.37 16 16 C -0.04 -0.89 5.87 -20.10 -0.12 -1.00 16 17 C -0.10 -1.52 9.59 22.52 0.22 -1.30 16 18 C -0.12 -1.36 10.03 22.23 0.22 -1.14 16 19 C -0.11 -1.07 10.04 22.33 0.22 -0.85 16 20 C -0.12 -1.53 10.03 22.23 0.22 -1.30 16 21 C -0.11 -1.94 9.74 22.53 0.22 -1.72 16 22 O 0.10 3.24 11.04 67.18 0.74 3.98 16 23 N -0.38 -14.31 12.05 -48.85 -0.59 -14.89 16 24 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 2.37 6.36 -2.39 -0.02 2.35 16 26 H 0.06 2.47 6.86 -2.39 -0.02 2.45 16 27 H 0.00 0.24 7.93 -2.38 -0.02 0.22 16 28 H -0.02 -1.41 8.12 -2.39 -0.02 -1.43 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16 31 H 0.07 2.97 7.93 -2.39 -0.02 2.95 16 32 H 0.20 3.97 7.47 -2.91 -0.02 3.95 16 33 H 0.14 1.79 7.16 -2.91 -0.02 1.77 16 34 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 35 H 0.15 0.67 8.06 -2.91 -0.02 0.64 16 36 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 37 H 0.13 2.24 7.96 -2.91 -0.02 2.22 16 Total: -1.00 -70.71 318.94 3.48 -67.24 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: 1.07 Total: 3.31 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 4.37 Total: -20.69 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -4.72 Total: -100.98 kcal Atomic # 8 Polarization: 3.24 SS G_CDS: 0.74 Total: 3.98 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -70.71 3.48 -67.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267907520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.717 kcal (2) G-P(sol) polarization free energy of solvation -70.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds