Wall clock time and date at job start Mon Mar 30 2020 02:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35712 * 116.99889 * 2 1 4 4 C 1.38652 * 120.14536 * 0.02562 * 3 2 1 5 5 C 1.38103 * 120.08824 * 179.72478 * 4 3 2 6 6 C 1.38514 * 120.39481 * 0.27108 * 5 4 3 7 7 C 1.50690 * 119.85276 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47522 * 90.00055 * 7 6 5 9 9 C 1.36931 * 120.00069 * 89.99918 * 8 7 6 10 10 H 1.07999 * 120.00294 * 304.46856 * 9 8 7 11 11 C 1.38812 * 120.00001 * 124.47579 * 9 8 7 12 12 N 1.31618 * 119.99937 * 164.67168 * 11 9 8 13 13 Si 1.86801 * 120.00019 * 344.66814 * 11 9 8 14 14 H 1.48495 * 109.46970 * 91.90665 * 13 11 9 15 15 H 1.48504 * 109.47021 * 211.90776 * 13 11 9 16 16 H 1.48498 * 109.47093 * 331.90335 * 13 11 9 17 17 C 1.46498 * 119.99354 * 269.99973 * 8 7 6 18 18 C 1.53013 * 117.49383 * 183.06890 * 17 8 7 19 19 C 1.53000 * 117.49804 * 114.41081 * 17 8 7 20 20 C 1.37829 * 120.29345 * 359.97438 * 6 5 4 21 21 C 1.39712 * 119.90137 * 0.02562 * 20 6 5 22 22 C 1.43203 * 120.18992 * 179.97438 * 21 20 6 23 23 N 3.53318 * 165.92664 * 181.09378 * 2 1 3 24 24 H 1.09004 * 109.46873 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47411 * 299.99824 * 1 2 3 26 26 H 1.09001 * 109.47328 * 60.00030 * 1 2 3 27 27 H 1.07997 * 119.95014 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.80019 * 180.29734 * 5 4 3 29 29 H 1.09008 * 109.47414 * 209.99730 * 7 6 5 30 30 H 1.08998 * 109.47146 * 329.99795 * 7 6 5 31 31 H 0.96998 * 119.99978 * 179.97438 * 12 11 9 32 32 H 1.08997 * 115.55695 * 328.73593 * 17 8 7 33 33 H 1.08998 * 117.49716 * 359.97438 * 18 17 8 34 34 H 1.08994 * 117.49511 * 145.02359 * 18 17 8 35 35 H 1.08996 * 117.50105 * 214.97202 * 19 17 8 36 36 H 1.09003 * 117.49653 * 359.97115 * 19 17 8 37 37 H 1.07999 * 120.04759 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2928 2.3739 0.0005 5 6 1.9210 3.6038 0.0063 6 6 3.3038 3.6845 0.0059 7 6 3.9765 5.0329 0.0128 8 7 4.1954 5.4625 1.3962 9 6 5.3588 5.1339 2.0392 10 1 5.6616 4.0998 2.1129 11 6 6.1490 6.1299 2.5965 12 7 7.0901 5.8163 3.4616 13 14 5.8768 7.9150 2.1186 14 1 4.9227 8.5417 3.0683 15 1 7.1706 8.6425 2.1643 16 1 5.3208 7.9800 0.7431 17 6 3.1695 6.2437 2.0915 18 6 3.4870 6.7235 3.5093 19 6 2.4783 5.5928 3.2914 20 6 4.0672 2.5370 0.0003 21 6 3.4445 1.2863 -0.0056 22 6 4.2317 0.0900 -0.0120 23 7 4.8561 -0.8590 -0.0164 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.2143 2.3192 0.0005 28 1 1.3305 4.5081 0.0115 29 1 4.9349 4.9636 -0.5020 30 1 3.3420 5.7581 -0.4968 31 1 7.6425 6.5122 3.8508 32 1 2.5701 6.8999 1.4606 33 1 4.4590 6.4576 3.9247 34 1 3.0962 7.6952 3.8111 35 1 1.4244 5.8212 3.4500 36 1 2.7867 4.5832 3.5631 37 1 5.1451 2.6045 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269705860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:05 Heat of formation + Delta-G solvation = 72.862909 kcal Electronic energy + Delta-G solvation = -20467.537230 eV Core-core repulsion = 17405.420080 eV Total energy + Delta-G solvation = -3062.117150 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22818 -37.99601 -37.00132 -36.07068 -33.22207 -32.05684 -31.23662 -29.81916 -27.65223 -25.48278 -23.89255 -23.15932 -21.59879 -21.36293 -19.82314 -18.65298 -17.38334 -16.84192 -16.19750 -15.88028 -15.30614 -14.71817 -14.32847 -14.23773 -13.91243 -13.72766 -13.53495 -13.06603 -12.87690 -12.52266 -12.28573 -12.12069 -11.95593 -11.80885 -11.60070 -11.03021 -10.96325 -10.86269 -10.73077 -10.45078 -10.37755 -9.84158 -9.53904 -9.17420 -8.81001 -8.48862 -7.96954 -6.53155 -6.05859 -3.76764 1.03956 1.56770 2.98291 3.14738 3.23093 3.36110 3.45652 3.51449 4.05666 4.18166 4.48457 4.80490 4.84213 4.94996 4.97413 5.01653 5.15826 5.27070 5.32632 5.46386 5.57389 5.62858 5.80972 5.85863 6.02654 6.10228 6.20283 6.29046 6.44418 6.47699 6.54206 6.58103 6.84396 6.94890 7.01001 7.28949 7.29821 7.81332 8.04782 8.46882 8.94327 9.58267 10.06292 11.03584 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023017 B = 0.005566 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.195139 B = 5029.245684 C = 5653.096167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.159 3.841 4 C -0.214 4.214 5 C -0.038 4.038 6 C -0.114 4.114 7 C 0.183 3.817 8 N -0.566 5.566 9 C -0.287 4.287 10 H 0.071 0.929 11 C 0.059 3.941 12 N -0.895 5.895 13 Si 0.885 3.115 14 H -0.270 1.270 15 H -0.305 1.305 16 H -0.270 1.270 17 C 0.109 3.891 18 C -0.198 4.198 19 C -0.211 4.211 20 C -0.012 4.012 21 C -0.070 4.070 22 C 0.273 3.727 23 N -0.436 5.436 24 H 0.098 0.902 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.265 0.735 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 -2.578 -7.597 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.110 3.890 4 C -0.232 4.232 5 C -0.058 4.058 6 C -0.117 4.117 7 C 0.058 3.942 8 N -0.284 5.284 9 C -0.416 4.416 10 H 0.089 0.911 11 C -0.145 4.145 12 N -0.533 5.533 13 Si 0.713 3.287 14 H -0.196 1.196 15 H -0.233 1.233 16 H -0.194 1.194 17 C 0.001 3.999 18 C -0.236 4.236 19 C -0.252 4.252 20 C -0.034 4.034 21 C -0.074 4.074 22 C -0.041 4.041 23 N -0.112 5.112 24 H 0.116 0.884 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.149 0.851 28 H 0.145 0.855 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.423 -4.176 -7.507 15.937 hybrid contribution -0.657 1.424 0.179 1.579 sum -14.080 -2.752 -7.329 16.109 Atomic orbital electron populations 1.23075 0.78153 1.03886 1.01603 1.86050 1.21603 1.26965 1.88302 1.18819 0.90320 0.84546 0.95286 1.21050 0.99760 0.91834 1.10595 1.21041 0.94373 0.96707 0.93663 1.20862 0.93344 0.97850 0.99618 1.19960 0.98330 0.88848 0.87111 1.43555 1.15201 1.61501 1.08175 1.18529 0.96493 0.93147 1.33409 0.91131 1.25858 0.94250 0.98764 0.95581 1.69869 1.21971 1.33852 1.27637 0.86795 0.76319 0.85568 0.79981 1.19612 1.23285 1.19445 1.21324 0.94133 0.97164 0.87243 1.23514 1.02270 0.96786 1.01050 1.23344 0.95432 0.98341 1.08050 1.21044 1.00724 0.88857 0.92734 1.15348 0.88054 0.88564 1.15420 1.25422 0.92983 0.92627 0.93089 1.81148 1.09254 1.10653 1.10117 0.88400 0.92326 0.92434 0.85146 0.85523 0.91116 0.93170 0.92469 0.89515 0.86240 0.90788 0.91221 0.89306 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.14 9.93 -18.84 -0.19 -4.33 16 3 C 0.16 2.20 6.69 -38.71 -0.26 1.94 16 4 C -0.21 -2.55 9.03 -39.48 -0.36 -2.90 16 5 C -0.04 -0.50 9.68 -39.53 -0.38 -0.88 16 6 C -0.11 -1.75 5.46 -104.67 -0.57 -2.32 16 7 C 0.18 3.16 5.83 -5.20 -0.03 3.12 16 8 N -0.57 -11.97 2.03 -167.02 -0.34 -12.31 16 9 C -0.29 -7.34 9.17 -15.06 -0.14 -7.48 16 10 H 0.07 2.01 8.06 -52.49 -0.42 1.59 16 11 C 0.06 1.57 3.74 -17.43 -0.07 1.50 16 12 N -0.89 -25.83 13.97 55.49 0.78 -25.06 16 13 Si 0.89 20.95 24.88 -169.99 -4.23 16.72 16 14 H -0.27 -6.13 5.80 56.52 0.33 -5.81 16 15 H -0.30 -7.49 7.11 56.52 0.40 -7.08 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 C 0.11 2.13 5.16 -67.92 -0.35 1.78 16 18 C -0.20 -4.13 6.69 -26.68 -0.18 -4.31 16 19 C -0.21 -3.95 10.36 -26.69 -0.28 -4.22 16 20 C -0.01 -0.20 9.40 -39.18 -0.37 -0.57 16 21 C -0.07 -1.09 5.75 -106.70 -0.61 -1.70 16 22 C 0.27 4.72 14.87 -22.47 -0.33 4.38 16 23 N -0.44 -8.18 18.54 41.84 0.78 -7.40 16 24 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 26 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 27 H 0.13 1.17 6.30 -52.49 -0.33 0.84 16 28 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.07 1.24 7.98 -51.92 -0.41 0.83 16 30 H 0.05 0.75 8.01 -51.93 -0.42 0.34 16 31 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.12 2.93 5.08 -51.93 -0.26 2.67 16 34 H 0.07 1.41 7.86 -51.93 -0.41 1.00 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 37 H 0.14 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -30.15 316.60 -6.16 -36.31 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.80 Total: 1.74 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -2.93 Total: -10.44 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 1.21 Total: -44.77 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.19 Total: -4.33 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.23 Total: 16.72 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.15 -6.16 -36.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269705860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.176 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds