Wall clock time and date at job start Mon Mar 30 2020 02:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35712 * 116.99889 * 2 1 4 4 C 1.38652 * 120.14536 * 0.02562 * 3 2 1 5 5 C 1.38103 * 120.08824 * 179.72478 * 4 3 2 6 6 C 1.38514 * 120.39481 * 0.27108 * 5 4 3 7 7 C 1.50690 * 119.85276 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.47522 * 90.00055 * 7 6 5 9 9 C 1.36931 * 120.00069 * 89.99918 * 8 7 6 10 10 H 1.07999 * 120.00294 * 304.46856 * 9 8 7 11 11 C 1.38812 * 120.00001 * 124.47579 * 9 8 7 12 12 N 1.31618 * 119.99937 * 164.67168 * 11 9 8 13 13 Si 1.86801 * 120.00019 * 344.66814 * 11 9 8 14 14 H 1.48495 * 109.46970 * 91.90665 * 13 11 9 15 15 H 1.48504 * 109.47021 * 211.90776 * 13 11 9 16 16 H 1.48498 * 109.47093 * 331.90335 * 13 11 9 17 17 C 1.46498 * 119.99354 * 269.99973 * 8 7 6 18 18 C 1.53013 * 117.49383 * 183.06890 * 17 8 7 19 19 C 1.53000 * 117.49804 * 114.41081 * 17 8 7 20 20 C 1.37829 * 120.29345 * 359.97438 * 6 5 4 21 21 C 1.39712 * 119.90137 * 0.02562 * 20 6 5 22 22 C 1.43203 * 120.18992 * 179.97438 * 21 20 6 23 23 N 3.53318 * 165.92664 * 181.09378 * 2 1 3 24 24 H 1.09004 * 109.46873 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47411 * 299.99824 * 1 2 3 26 26 H 1.09001 * 109.47328 * 60.00030 * 1 2 3 27 27 H 1.07997 * 119.95014 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.80019 * 180.29734 * 5 4 3 29 29 H 1.09008 * 109.47414 * 209.99730 * 7 6 5 30 30 H 1.08998 * 109.47146 * 329.99795 * 7 6 5 31 31 H 0.96998 * 119.99978 * 179.97438 * 12 11 9 32 32 H 1.08997 * 115.55695 * 328.73593 * 17 8 7 33 33 H 1.08998 * 117.49716 * 359.97438 * 18 17 8 34 34 H 1.08994 * 117.49511 * 145.02359 * 18 17 8 35 35 H 1.08996 * 117.50105 * 214.97202 * 19 17 8 36 36 H 1.09003 * 117.49653 * 359.97115 * 19 17 8 37 37 H 1.07999 * 120.04759 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2928 2.3739 0.0005 5 6 1.9210 3.6038 0.0063 6 6 3.3038 3.6845 0.0059 7 6 3.9765 5.0329 0.0128 8 7 4.1954 5.4625 1.3962 9 6 5.3588 5.1339 2.0392 10 1 5.6616 4.0998 2.1129 11 6 6.1490 6.1299 2.5965 12 7 7.0901 5.8163 3.4616 13 14 5.8768 7.9150 2.1186 14 1 4.9227 8.5417 3.0683 15 1 7.1706 8.6425 2.1643 16 1 5.3208 7.9800 0.7431 17 6 3.1695 6.2437 2.0915 18 6 3.4870 6.7235 3.5093 19 6 2.4783 5.5928 3.2914 20 6 4.0672 2.5370 0.0003 21 6 3.4445 1.2863 -0.0056 22 6 4.2317 0.0900 -0.0120 23 7 4.8561 -0.8590 -0.0164 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.2143 2.3192 0.0005 28 1 1.3305 4.5081 0.0115 29 1 4.9349 4.9636 -0.5020 30 1 3.3420 5.7581 -0.4968 31 1 7.6425 6.5122 3.8508 32 1 2.5701 6.8999 1.4606 33 1 4.4590 6.4576 3.9247 34 1 3.0962 7.6952 3.8111 35 1 1.4244 5.8212 3.4500 36 1 2.7867 4.5832 3.5631 37 1 5.1451 2.6045 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269705860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:05 Heat of formation + Delta-G solvation = 55.125616 kcal Electronic energy + Delta-G solvation = -20468.306377 eV Core-core repulsion = 17405.420080 eV Total energy + Delta-G solvation = -3062.886296 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27132 -39.28898 -38.35221 -37.45026 -34.77534 -33.87273 -32.38242 -31.15730 -28.51671 -26.99868 -25.16643 -24.60242 -23.13477 -22.51475 -21.47061 -19.80430 -18.67058 -18.41367 -17.30589 -16.83386 -16.70836 -16.55942 -15.54661 -15.33864 -15.28085 -15.04428 -14.84332 -14.70257 -14.15893 -13.99410 -13.85977 -13.40125 -13.19837 -13.09300 -12.78513 -12.56874 -12.38641 -12.10505 -12.01702 -11.85092 -11.79741 -11.71571 -11.19850 -10.76974 -10.42622 -9.92350 -9.10773 -8.30858 -8.05310 -5.79482 -0.11093 0.47240 1.49794 1.52761 1.61893 1.64667 1.95720 2.27260 2.53381 2.83501 2.95008 3.09696 3.42031 3.53233 3.91500 4.03471 4.25839 4.35053 4.40786 4.44287 4.48587 4.48911 4.50419 4.60420 4.73968 4.80602 5.01761 5.03087 5.09925 5.18599 5.22453 5.35422 5.44561 5.65743 5.73959 5.80836 6.05440 6.31765 6.38564 6.50001 7.19451 7.66741 8.15605 9.03036 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023017 B = 0.005566 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.195139 B = 5029.245684 C = 5653.096167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.339 6.339 3 C 0.166 3.834 4 C -0.200 4.200 5 C -0.023 4.023 6 C -0.128 4.128 7 C 0.181 3.819 8 N -0.577 5.577 9 C -0.268 4.268 10 H 0.021 0.979 11 C 0.008 3.992 12 N -0.952 5.952 13 Si 0.946 3.054 14 H -0.251 1.251 15 H -0.323 1.323 16 H -0.251 1.251 17 C 0.109 3.891 18 C -0.222 4.222 19 C -0.191 4.191 20 C -0.026 4.026 21 C -0.095 4.095 22 C 0.285 3.715 23 N -0.475 5.475 24 H 0.114 0.886 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.173 0.827 28 H 0.161 0.839 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.262 0.738 32 H 0.131 0.869 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.057 0.943 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.398 -0.766 -8.973 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.252 6.252 3 C 0.117 3.883 4 C -0.218 4.218 5 C -0.042 4.042 6 C -0.131 4.131 7 C 0.057 3.943 8 N -0.297 5.297 9 C -0.398 4.398 10 H 0.038 0.962 11 C -0.190 4.190 12 N -0.593 5.593 13 Si 0.772 3.228 14 H -0.176 1.176 15 H -0.252 1.252 16 H -0.175 1.175 17 C 0.002 3.998 18 C -0.260 4.260 19 C -0.231 4.231 20 C -0.048 4.048 21 C -0.099 4.099 22 C -0.029 4.029 23 N -0.153 5.153 24 H 0.132 0.868 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.190 0.810 28 H 0.178 0.822 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.076 0.924 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -18.220 -2.382 -8.914 20.424 hybrid contribution 0.691 0.703 0.607 1.158 sum -17.529 -1.679 -8.307 19.471 Atomic orbital electron populations 1.23474 0.75337 1.05744 1.03303 1.86044 1.24530 1.26762 1.87859 1.18946 0.89579 0.85844 0.93885 1.21438 1.01581 0.90332 1.08431 1.21368 0.93074 0.98472 0.91296 1.20674 0.94681 0.96248 1.01485 1.20066 0.98766 0.90633 0.84877 1.43661 1.14422 1.61898 1.09725 1.18225 0.98035 0.90933 1.32571 0.96182 1.26481 0.94056 1.02908 0.95507 1.70019 1.24241 1.34961 1.30129 0.85825 0.75758 0.80485 0.80749 1.17575 1.25240 1.17489 1.21657 0.93690 0.97183 0.87257 1.23434 1.01169 0.98741 1.02643 1.23281 0.97053 0.95981 1.06777 1.20907 0.99915 0.89874 0.94091 1.15438 0.89273 0.87463 1.17759 1.25850 0.92374 0.92645 0.91999 1.81127 1.10278 1.11950 1.11911 0.86800 0.90919 0.90208 0.81008 0.82151 0.92758 0.89308 0.92950 0.85169 0.90728 0.88508 0.86997 0.92389 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.34 -8.09 9.93 -90.34 -0.90 -8.98 16 3 C 0.17 4.24 6.69 22.84 0.15 4.39 16 4 C -0.20 -3.82 9.03 22.34 0.20 -3.62 16 5 C -0.02 -0.49 9.68 22.30 0.22 -0.27 16 6 C -0.13 -3.72 5.46 -19.90 -0.11 -3.83 16 7 C 0.18 5.85 5.83 85.63 0.50 6.35 16 8 N -0.58 -23.62 2.03 -682.33 -1.39 -25.00 16 9 C -0.27 -14.17 9.17 84.03 0.77 -13.40 16 10 H 0.02 1.26 8.06 -2.91 -0.02 1.24 16 11 C 0.01 0.46 3.74 84.86 0.32 0.78 16 12 N -0.95 -58.07 13.97 21.65 0.30 -57.77 16 13 Si 0.95 43.21 24.88 68.60 1.71 44.91 16 14 H -0.25 -10.59 5.80 99.48 0.58 -10.02 16 15 H -0.32 -15.62 7.11 99.48 0.71 -14.91 16 16 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 17 C 0.11 3.82 5.16 45.00 0.23 4.05 16 18 C -0.22 -8.71 6.69 30.63 0.20 -8.50 16 19 C -0.19 -6.48 10.36 30.62 0.32 -6.16 16 20 C -0.03 -0.87 9.40 22.53 0.21 -0.66 16 21 C -0.09 -2.99 5.75 -21.21 -0.12 -3.12 16 22 C 0.28 10.28 14.87 88.33 1.31 11.59 16 23 N -0.48 -18.76 18.54 19.00 0.35 -18.41 16 24 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 26 H 0.08 0.65 7.66 -2.39 -0.02 0.63 16 27 H 0.17 1.90 6.30 -2.91 -0.02 1.88 16 28 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 29 H 0.05 1.90 7.98 -2.38 -0.02 1.88 16 30 H 0.09 2.21 8.01 -2.39 -0.02 2.19 16 31 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 33 H 0.07 3.69 5.08 -2.39 -0.01 3.67 16 34 H 0.10 3.32 7.86 -2.39 -0.02 3.30 16 35 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -71.23 316.60 6.34 -64.88 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.95 Total: 11.46 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 5.32 Total: -11.09 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -0.73 Total: -101.18 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.90 Total: -8.98 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.71 Total: 44.91 kcal Total: -71.23 6.34 -64.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269705860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.007 kcal (2) G-P(sol) polarization free energy of solvation -71.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds