Wall clock time and date at job start Mon Mar 30 2020 01:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 109.47207 * 2 1 4 4 C 1.52996 * 109.47394 * 119.99702 * 2 1 3 5 5 C 1.47195 * 109.47767 * 184.99760 * 4 2 1 6 6 N 3.43557 * 154.82495 * 111.56920 * 2 1 3 7 7 N 1.46498 * 109.47216 * 240.00080 * 2 1 3 8 8 C 1.46500 * 119.99931 * 300.00156 * 7 2 1 9 9 C 1.34778 * 120.00155 * 120.00113 * 7 2 1 10 10 O 1.21592 * 119.99918 * 4.57532 * 9 7 2 11 11 C 1.47640 * 120.00085 * 184.58193 * 9 7 2 12 12 C 1.40011 * 119.89582 * 22.10293 * 11 9 7 13 13 C 1.36314 * 120.10707 * 179.71784 * 12 11 9 14 14 C 1.40890 * 119.89014 * 0.57513 * 13 12 11 15 15 C 1.41112 * 120.10118 * 179.67459 * 14 13 12 16 16 H 1.08006 * 119.99893 * 165.53571 * 15 14 13 17 17 C 1.40219 * 120.00377 * 345.53881 * 15 14 13 18 18 N 1.30643 * 120.00301 * 330.91863 * 17 15 14 19 19 Si 1.86800 * 120.00275 * 150.91259 * 17 15 14 20 20 H 1.48498 * 109.46988 * 94.99949 * 19 17 15 21 21 H 1.48502 * 109.47606 * 214.99949 * 19 17 15 22 22 H 1.48503 * 109.47317 * 335.00156 * 19 17 15 23 23 C 1.40886 * 119.79401 * 359.69923 * 14 13 12 24 24 C 1.36317 * 119.89183 * 359.97438 * 23 14 13 25 25 H 1.08999 * 109.47277 * 300.00395 * 1 2 3 26 26 H 1.09004 * 109.46893 * 59.99412 * 1 2 3 27 27 H 1.08996 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47250 * 305.00602 * 4 2 1 29 29 H 1.09007 * 109.46550 * 65.00085 * 4 2 1 30 30 H 1.08999 * 109.47232 * 84.93838 * 8 7 2 31 31 H 1.08995 * 109.46842 * 324.93924 * 8 7 2 32 32 H 1.09004 * 109.47089 * 204.93878 * 8 7 2 33 33 H 1.08002 * 119.94513 * 0.02562 * 12 11 9 34 34 H 1.08005 * 120.05747 * 180.24886 * 13 12 11 35 35 H 0.96993 * 120.00864 * 180.02562 * 18 17 15 36 36 H 1.08004 * 120.05552 * 179.97438 * 23 14 13 37 37 H 1.07999 * 119.94464 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5070 -0.6174 1.3113 6 7 4.6392 -0.5373 1.3591 7 7 2.0183 -0.6906 -1.1962 8 6 1.6644 -2.0931 -1.4280 9 6 2.7932 -0.0356 -2.0833 10 8 3.1557 1.1015 -1.8508 11 6 3.2017 -0.6987 -3.3376 12 6 2.4543 -1.7733 -3.8343 13 6 2.8243 -2.3850 -4.9950 14 6 3.9678 -1.9420 -5.6885 15 6 4.3588 -2.5765 -6.8868 16 1 5.0809 -2.1047 -7.5369 17 6 3.8099 -3.8193 -7.2336 18 7 3.4217 -4.6456 -6.2991 19 14 3.6336 -4.2936 -9.0317 20 1 4.8114 -5.0955 -9.4499 21 1 2.3980 -5.0972 -9.2130 22 1 3.5512 -3.0650 -9.8619 23 6 4.7201 -0.8640 -5.1816 24 6 4.3385 -0.2543 -4.0237 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6054 -0.2617 2.1369 29 1 1.7516 -1.7715 1.2055 30 1 0.6933 -2.1463 -1.9202 31 1 1.6175 -2.6184 -0.4741 32 1 2.4191 -2.5583 -2.0623 33 1 1.5803 -2.1150 -3.2997 34 1 2.2448 -3.2113 -5.3796 35 1 3.0424 -5.5055 -6.5389 36 1 5.5977 -0.5213 -5.7096 37 1 4.9147 0.5719 -3.6342 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270258538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:00 Heat of formation + Delta-G solvation = 23.873923 kcal Electronic energy + Delta-G solvation = -20325.189165 eV Core-core repulsion = 17260.947693 eV Total energy + Delta-G solvation = -3064.241472 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.76931 -37.49574 -36.61175 -35.50672 -34.07354 -32.57315 -29.90170 -29.47867 -28.27660 -26.70675 -25.95168 -22.69079 -20.99618 -20.75639 -18.92304 -17.71658 -17.48343 -16.57690 -15.95477 -15.48799 -15.22194 -14.40430 -14.12419 -13.84189 -13.50532 -13.22022 -13.09773 -13.02825 -12.64387 -12.43413 -12.26555 -12.22353 -11.96852 -11.68486 -11.58196 -11.37572 -11.21979 -11.05480 -10.98797 -10.85025 -10.62405 -10.10623 -9.54792 -9.11924 -8.90300 -8.31298 -7.70033 -7.59949 -7.16176 -4.58753 2.27553 2.85144 2.91144 2.91783 2.94421 3.00133 3.05328 3.43549 3.68818 3.77160 4.06640 4.44840 4.77286 5.03808 5.14203 5.24836 5.35649 5.50519 5.55468 5.60628 5.69821 5.76927 6.05888 6.08819 6.18807 6.20849 6.33131 6.72876 6.81733 6.92590 7.09287 7.15380 7.42491 7.62460 7.74182 7.81059 7.87039 8.02554 8.10394 8.37943 8.61979 8.77250 9.01650 9.73870 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029243 B = 0.004386 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.277625 B = 6382.710618 C = 6636.303736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 H 0.106 0.894 4 C -0.038 4.038 5 C 0.205 3.795 6 N -0.430 5.430 7 N -0.622 5.622 8 C 0.068 3.932 9 C 0.575 3.425 10 O -0.571 6.571 11 C -0.294 4.294 12 C -0.079 4.079 13 C -0.197 4.197 14 C 0.124 3.876 15 C -0.438 4.438 16 H 0.086 0.914 17 C 0.081 3.919 18 N -0.753 5.753 19 Si 0.907 3.093 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.255 1.255 23 C -0.246 4.246 24 C -0.018 4.018 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.288 0.712 36 H 0.096 0.904 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.320 -0.540 8.213 12.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.124 0.876 4 C -0.079 4.079 5 C -0.113 4.113 6 N -0.107 5.107 7 N -0.357 5.357 8 C -0.075 4.075 9 C 0.372 3.628 10 O -0.453 6.453 11 C -0.298 4.298 12 C -0.097 4.097 13 C -0.216 4.216 14 C 0.121 3.879 15 C -0.465 4.465 16 H 0.104 0.896 17 C -0.143 4.143 18 N -0.375 5.375 19 Si 0.730 3.270 20 H -0.191 1.191 21 H -0.196 1.196 22 H -0.178 1.178 23 C -0.265 4.265 24 C -0.037 4.037 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.512 -0.081 8.469 11.321 hybrid contribution -0.554 -0.520 -0.781 1.090 sum -8.066 -0.601 7.688 11.159 Atomic orbital electron populations 1.22103 0.93947 1.02696 1.02824 1.20881 0.94278 0.98375 0.83056 0.87615 1.19764 0.82643 1.04551 1.00943 1.28964 0.95216 0.93726 0.93419 1.81197 1.12984 1.08164 1.08350 1.47751 1.52981 1.12403 1.22526 1.22444 1.01565 0.82022 1.01432 1.18739 0.75769 0.85102 0.83190 1.90630 1.56866 1.19233 1.78565 1.18762 1.05254 1.06211 0.99613 1.21292 0.98316 0.93885 0.96254 1.21034 0.99451 1.03872 0.97292 1.17756 0.89610 0.89764 0.90756 1.19876 1.20646 1.01579 1.04381 0.89601 1.26153 0.92329 0.95631 1.00192 1.69801 1.25521 1.06398 1.35764 0.86303 0.78995 0.79729 0.81982 1.19135 1.19552 1.17846 1.20593 1.02826 1.03787 0.99317 1.20297 0.93887 0.95862 0.93697 0.91362 0.91584 0.91910 0.86629 0.87288 0.92595 0.92689 0.87990 0.86762 0.86141 0.90052 0.88624 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.19 37.16 0.34 -1.01 16 2 C 0.14 1.68 2.61 -67.93 -0.18 1.50 16 3 H 0.11 1.53 6.91 -51.92 -0.36 1.17 16 4 C -0.04 -0.35 5.13 -29.52 -0.15 -0.50 16 5 C 0.20 2.99 15.14 -20.76 -0.31 2.67 16 6 N -0.43 -7.89 18.54 42.16 0.78 -7.10 16 7 N -0.62 -9.88 2.46 -175.12 -0.43 -10.31 16 8 C 0.07 0.91 7.75 59.85 0.46 1.37 16 9 C 0.58 12.24 7.51 -12.42 -0.09 12.15 16 10 O -0.57 -13.74 15.88 5.28 0.08 -13.66 16 11 C -0.29 -6.79 5.59 -104.73 -0.59 -7.37 16 12 C -0.08 -1.72 7.48 -39.61 -0.30 -2.02 16 13 C -0.20 -4.77 8.76 -39.27 -0.34 -5.11 16 14 C 0.12 3.18 5.65 -106.80 -0.60 2.57 16 15 C -0.44 -10.87 9.00 -37.75 -0.34 -11.21 16 16 H 0.09 2.05 7.99 -52.48 -0.42 1.63 16 17 C 0.08 1.85 4.98 -17.31 -0.09 1.76 16 18 N -0.75 -17.43 11.03 55.56 0.61 -16.81 16 19 Si 0.91 16.82 29.65 -169.99 -5.04 11.79 16 20 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 21 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 22 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 23 C -0.25 -6.08 9.73 -39.27 -0.38 -6.47 16 24 C -0.02 -0.44 9.52 -39.61 -0.38 -0.82 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 28 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.11 0.77 6.49 -51.93 -0.34 0.43 16 30 H 0.06 0.67 7.16 -51.93 -0.37 0.29 16 31 H 0.05 0.55 6.35 -51.93 -0.33 0.22 16 32 H 0.10 1.68 4.97 -51.93 -0.26 1.42 16 33 H 0.11 2.08 4.11 -52.49 -0.22 1.86 16 34 H 0.12 2.91 5.86 -52.48 -0.31 2.61 16 35 H 0.29 5.91 8.29 -40.82 -0.34 5.57 16 36 H 0.10 2.23 8.06 -52.48 -0.42 1.80 16 37 H 0.10 2.29 7.79 -52.49 -0.41 1.88 16 LS Contribution 313.00 15.07 4.72 4.72 Total: -1.00 -31.34 313.00 -6.45 -37.80 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -4.23 Total: 6.07 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -2.95 Total: -12.48 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.96 Total: -34.23 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.08 Total: -13.66 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.04 Total: 11.79 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.34 -6.45 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270258538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.669 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds