Wall clock time and date at job start Mon Mar 30 2020 01:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 109.47207 * 2 1 4 4 C 1.52996 * 109.47394 * 119.99702 * 2 1 3 5 5 C 1.47195 * 109.47767 * 184.99760 * 4 2 1 6 6 N 3.43557 * 154.82495 * 111.56920 * 2 1 3 7 7 N 1.46498 * 109.47216 * 240.00080 * 2 1 3 8 8 C 1.46500 * 119.99931 * 300.00156 * 7 2 1 9 9 C 1.34778 * 120.00155 * 120.00113 * 7 2 1 10 10 O 1.21592 * 119.99918 * 4.57532 * 9 7 2 11 11 C 1.47640 * 120.00085 * 184.58193 * 9 7 2 12 12 C 1.40011 * 119.89582 * 22.10293 * 11 9 7 13 13 C 1.36314 * 120.10707 * 179.71784 * 12 11 9 14 14 C 1.40890 * 119.89014 * 0.57513 * 13 12 11 15 15 C 1.41112 * 120.10118 * 179.67459 * 14 13 12 16 16 H 1.08006 * 119.99893 * 165.53571 * 15 14 13 17 17 C 1.40219 * 120.00377 * 345.53881 * 15 14 13 18 18 N 1.30643 * 120.00301 * 330.91863 * 17 15 14 19 19 Si 1.86800 * 120.00275 * 150.91259 * 17 15 14 20 20 H 1.48498 * 109.46988 * 94.99949 * 19 17 15 21 21 H 1.48502 * 109.47606 * 214.99949 * 19 17 15 22 22 H 1.48503 * 109.47317 * 335.00156 * 19 17 15 23 23 C 1.40886 * 119.79401 * 359.69923 * 14 13 12 24 24 C 1.36317 * 119.89183 * 359.97438 * 23 14 13 25 25 H 1.08999 * 109.47277 * 300.00395 * 1 2 3 26 26 H 1.09004 * 109.46893 * 59.99412 * 1 2 3 27 27 H 1.08996 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47250 * 305.00602 * 4 2 1 29 29 H 1.09007 * 109.46550 * 65.00085 * 4 2 1 30 30 H 1.08999 * 109.47232 * 84.93838 * 8 7 2 31 31 H 1.08995 * 109.46842 * 324.93924 * 8 7 2 32 32 H 1.09004 * 109.47089 * 204.93878 * 8 7 2 33 33 H 1.08002 * 119.94513 * 0.02562 * 12 11 9 34 34 H 1.08005 * 120.05747 * 180.24886 * 13 12 11 35 35 H 0.96993 * 120.00864 * 180.02562 * 18 17 15 36 36 H 1.08004 * 120.05552 * 179.97438 * 23 14 13 37 37 H 1.07999 * 119.94464 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5070 -0.6174 1.3113 6 7 4.6392 -0.5373 1.3591 7 7 2.0183 -0.6906 -1.1962 8 6 1.6644 -2.0931 -1.4280 9 6 2.7932 -0.0356 -2.0833 10 8 3.1557 1.1015 -1.8508 11 6 3.2017 -0.6987 -3.3376 12 6 2.4543 -1.7733 -3.8343 13 6 2.8243 -2.3850 -4.9950 14 6 3.9678 -1.9420 -5.6885 15 6 4.3588 -2.5765 -6.8868 16 1 5.0809 -2.1047 -7.5369 17 6 3.8099 -3.8193 -7.2336 18 7 3.4217 -4.6456 -6.2991 19 14 3.6336 -4.2936 -9.0317 20 1 4.8114 -5.0955 -9.4499 21 1 2.3980 -5.0972 -9.2130 22 1 3.5512 -3.0650 -9.8619 23 6 4.7201 -0.8640 -5.1816 24 6 4.3385 -0.2543 -4.0237 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6054 -0.2617 2.1369 29 1 1.7516 -1.7715 1.2055 30 1 0.6933 -2.1463 -1.9202 31 1 1.6175 -2.6184 -0.4741 32 1 2.4191 -2.5583 -2.0623 33 1 1.5803 -2.1150 -3.2997 34 1 2.2448 -3.2113 -5.3796 35 1 3.0424 -5.5055 -6.5389 36 1 5.5977 -0.5213 -5.7096 37 1 4.9147 0.5719 -3.6342 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270258538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:00 Heat of formation + Delta-G solvation = 5.080328 kcal Electronic energy + Delta-G solvation = -20326.004116 eV Core-core repulsion = 17260.947693 eV Total energy + Delta-G solvation = -3065.056423 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23756 -39.11876 -38.02572 -36.84076 -35.81800 -33.84663 -31.57950 -31.29653 -29.05693 -28.01148 -27.62191 -24.18771 -22.78597 -22.17903 -20.33758 -19.40574 -18.65875 -18.00355 -17.50486 -17.01006 -16.44833 -15.94164 -15.59415 -15.16695 -14.83107 -14.69260 -14.47400 -14.30809 -14.21583 -13.82491 -13.70586 -13.37101 -13.20924 -13.10583 -12.88196 -12.64966 -12.59893 -12.48590 -12.35745 -12.22770 -11.84271 -11.71621 -11.27560 -10.88738 -10.55998 -9.66883 -9.50841 -9.42455 -8.89373 -6.45769 0.51724 1.15882 1.35804 1.42294 1.54904 1.80152 1.85949 2.07654 2.15625 2.20952 2.70312 3.14390 3.68310 3.85043 4.12137 4.19287 4.33240 4.37424 4.40370 4.49761 4.72613 4.74719 4.82419 4.93547 4.98807 5.00675 5.04384 5.18126 5.23112 5.32524 5.46866 5.56198 5.75356 5.87344 5.96237 6.03018 6.20942 6.52117 6.54280 6.66980 6.75670 6.91388 7.42352 8.05240 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029243 B = 0.004386 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.277625 B = 6382.710618 C = 6636.303736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.132 3.868 3 H 0.075 0.925 4 C -0.033 4.033 5 C 0.226 3.774 6 N -0.512 5.512 7 N -0.613 5.613 8 C 0.058 3.942 9 C 0.569 3.431 10 O -0.611 6.611 11 C -0.308 4.308 12 C -0.063 4.063 13 C -0.218 4.218 14 C 0.097 3.903 15 C -0.471 4.471 16 H 0.081 0.919 17 C 0.048 3.952 18 N -0.774 5.774 19 Si 0.982 3.018 20 H -0.259 1.259 21 H -0.255 1.255 22 H -0.261 1.261 23 C -0.267 4.267 24 C -0.036 4.036 25 H 0.102 0.898 26 H 0.044 0.956 27 H 0.088 0.912 28 H 0.169 0.831 29 H 0.146 0.854 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.155 0.845 34 H 0.120 0.880 35 H 0.302 0.698 36 H 0.095 0.905 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.609 -2.422 9.439 15.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.028 3.972 3 H 0.093 0.907 4 C -0.072 4.072 5 C -0.091 4.091 6 N -0.190 5.190 7 N -0.345 5.345 8 C -0.083 4.083 9 C 0.364 3.636 10 O -0.496 6.496 11 C -0.312 4.312 12 C -0.081 4.081 13 C -0.237 4.237 14 C 0.094 3.906 15 C -0.497 4.497 16 H 0.100 0.900 17 C -0.175 4.175 18 N -0.396 5.396 19 Si 0.801 3.199 20 H -0.183 1.183 21 H -0.179 1.179 22 H -0.185 1.185 23 C -0.286 4.286 24 C -0.055 4.055 25 H 0.120 0.880 26 H 0.063 0.937 27 H 0.106 0.894 28 H 0.186 0.814 29 H 0.164 0.836 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.172 0.828 34 H 0.138 0.862 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.832 -1.993 9.745 14.707 hybrid contribution 0.420 0.063 -1.035 1.119 sum -10.412 -1.930 8.711 13.712 Atomic orbital electron populations 1.22064 0.90314 1.04579 1.03556 1.21213 0.96860 0.96793 0.82323 0.90713 1.20228 0.78836 1.06892 1.01294 1.30116 0.96406 0.91400 0.91139 1.81220 1.15811 1.10938 1.11000 1.47785 1.50963 1.13272 1.22453 1.22585 1.01423 0.80392 1.03910 1.18540 0.76725 0.84707 0.83637 1.90603 1.58729 1.20899 1.79387 1.19131 1.04789 1.06570 1.00752 1.21655 0.98858 0.92387 0.95159 1.21118 0.99502 1.04675 0.98430 1.18101 0.90561 0.90315 0.91653 1.20121 1.21946 1.03002 1.04640 0.90050 1.26936 0.91350 0.94686 1.04543 1.69774 1.24965 1.07049 1.37814 0.85190 0.79636 0.79174 0.75859 1.18350 1.17869 1.18459 1.20691 1.03392 1.04632 0.99931 1.20416 0.94972 0.96010 0.94097 0.87962 0.93653 0.89360 0.81387 0.83613 0.90026 0.87969 0.91253 0.82766 0.86217 0.88618 0.88697 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.19 71.98 0.66 -1.12 16 2 C 0.13 2.73 2.61 44.99 0.12 2.85 16 3 H 0.07 2.06 6.91 -2.38 -0.02 2.05 16 4 C -0.03 -0.44 5.13 28.79 0.15 -0.29 16 5 C 0.23 6.19 15.14 89.44 1.35 7.55 16 6 N -0.51 -18.95 18.54 20.00 0.37 -18.58 16 7 N -0.61 -18.10 2.46 -826.22 -2.03 -20.13 16 8 C 0.06 1.33 7.75 127.77 0.99 2.32 16 9 C 0.57 24.44 7.51 86.73 0.65 25.09 16 10 O -0.61 -30.44 15.88 -4.00 -0.06 -30.50 16 11 C -0.31 -14.60 5.59 -19.93 -0.11 -14.71 16 12 C -0.06 -2.72 7.48 22.25 0.17 -2.55 16 13 C -0.22 -10.73 8.76 22.47 0.20 -10.53 16 14 C 0.10 5.16 5.65 -21.28 -0.12 5.04 16 15 C -0.47 -24.16 9.00 23.46 0.21 -23.95 16 16 H 0.08 4.07 7.99 -2.91 -0.02 4.05 16 17 C 0.05 2.16 4.98 85.35 0.42 2.59 16 18 N -0.77 -35.56 11.03 21.87 0.24 -35.32 16 19 Si 0.98 33.95 29.65 68.60 2.03 35.98 16 20 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 21 H -0.25 -8.11 7.11 99.48 0.71 -7.41 16 22 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 23 C -0.27 -14.08 9.73 22.47 0.22 -13.86 16 24 C -0.04 -1.85 9.52 22.25 0.21 -1.63 16 25 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.09 0.67 7.67 -2.39 -0.02 0.65 16 28 H 0.17 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.15 1.02 6.49 -2.38 -0.02 1.01 16 30 H 0.08 1.52 7.16 -2.39 -0.02 1.50 16 31 H 0.10 1.43 6.35 -2.39 -0.02 1.42 16 32 H 0.07 2.12 4.97 -2.38 -0.01 2.11 16 33 H 0.16 5.28 4.11 -2.91 -0.01 5.27 16 34 H 0.12 5.82 5.86 -2.91 -0.02 5.80 16 35 H 0.30 12.03 8.29 -92.71 -0.77 11.26 16 36 H 0.09 4.79 8.06 -2.91 -0.02 4.77 16 37 H 0.09 4.48 7.79 -2.91 -0.02 4.45 16 Total: -1.00 -76.00 313.00 6.77 -69.23 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 1.10 Total: 22.54 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 5.12 Total: -23.21 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -1.42 Total: -74.04 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.06 Total: -30.50 kcal Atomic # 14 Polarization: 33.95 SS G_CDS: 2.03 Total: 35.98 kcal Total: -76.00 6.77 -69.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270258538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.308 kcal (2) G-P(sol) polarization free energy of solvation -75.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds