Wall clock time and date at job start Mon Mar 30 2020 01:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46674 * 2 1 4 4 C 1.46501 * 119.99832 * 280.70225 * 3 2 1 5 5 C 1.53000 * 109.47428 * 270.00392 * 4 3 2 6 6 C 1.47201 * 109.47043 * 180.02562 * 5 4 3 7 7 N 5.65191 * 109.56893 * 308.49729 * 2 1 3 8 8 C 1.34776 * 119.99999 * 100.71485 * 3 2 1 9 9 O 1.21583 * 119.99904 * 186.64161 * 8 3 2 10 10 C 1.47642 * 120.00154 * 6.63573 * 8 3 2 11 11 C 1.40013 * 119.89685 * 148.74630 * 10 8 3 12 12 C 1.36315 * 120.10623 * 180.25517 * 11 10 8 13 13 C 1.40890 * 119.89382 * 359.51983 * 12 11 10 14 14 C 1.41111 * 120.10344 * 180.22771 * 13 12 11 15 15 H 1.08001 * 119.99763 * 209.69673 * 14 13 12 16 16 C 1.40221 * 119.99996 * 29.70189 * 14 13 12 17 17 N 1.30651 * 120.00019 * 10.74880 * 16 14 13 18 18 Si 1.86804 * 120.00031 * 190.75244 * 16 14 13 19 19 H 1.48492 * 109.47167 * 89.99848 * 18 16 14 20 20 H 1.48497 * 109.46812 * 210.00079 * 18 16 14 21 21 H 1.48502 * 109.46793 * 329.99488 * 18 16 14 22 22 C 1.40892 * 119.79005 * 0.50055 * 13 12 11 23 23 C 1.36318 * 119.88985 * 359.73229 * 22 13 12 24 24 H 1.08994 * 109.47071 * 59.99808 * 1 2 3 25 25 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47079 * 300.00161 * 1 2 3 27 27 H 1.08991 * 109.46875 * 239.99559 * 2 1 3 28 28 H 1.09003 * 109.47004 * 119.99956 * 2 1 3 29 29 H 1.08997 * 109.46937 * 30.00863 * 4 3 2 30 30 H 1.09007 * 109.46544 * 150.00562 * 4 3 2 31 31 H 1.08998 * 109.46727 * 300.00339 * 5 4 3 32 32 H 1.09003 * 109.46507 * 60.00145 * 5 4 3 33 33 H 1.07999 * 119.94270 * 359.97438 * 11 10 8 34 34 H 1.08003 * 120.05332 * 179.71924 * 12 11 10 35 35 H 0.97000 * 119.99585 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.05066 * 179.70916 * 22 13 12 37 37 H 1.07999 * 119.94101 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0402 2.1504 -1.2467 5 6 3.3842 1.9457 -1.9487 6 6 3.4064 2.7190 -3.2010 7 7 3.4231 3.3150 -4.1679 8 6 2.4474 1.9443 1.1468 9 8 2.7384 3.1245 1.1729 10 6 2.5642 1.1280 2.3715 11 6 3.5476 1.4308 3.3209 12 6 3.6626 0.6767 4.4507 13 6 2.7832 -0.4026 4.6670 14 6 2.8952 -1.1831 5.8373 15 1 2.6093 -2.2245 5.8211 16 6 3.3775 -0.6067 7.0210 17 7 3.5243 0.6889 7.1041 18 14 3.8103 -1.6912 8.4792 19 1 5.2360 -2.0964 8.3887 20 1 3.5888 -0.9376 9.7394 21 1 2.9499 -2.9015 8.4684 22 6 1.7955 -0.7037 3.7085 23 6 1.6913 0.0532 2.5795 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.2348 1.8103 -1.8976 30 1 1.9045 3.2086 -1.0231 31 1 4.1895 2.2858 -1.2977 32 1 3.5198 0.8875 -2.1722 33 1 4.2192 2.2603 3.1557 34 1 4.4245 0.9083 5.1804 35 1 3.8576 1.0876 7.9232 36 1 1.1222 -1.5330 3.8678 37 1 0.9342 -0.1766 1.8445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270274714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:43 Heat of formation + Delta-G solvation = 27.480473 kcal Electronic energy + Delta-G solvation = -20041.210431 eV Core-core repulsion = 16977.125351 eV Total energy + Delta-G solvation = -3064.085080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.86179 -37.40402 -36.77795 -35.77869 -33.98865 -32.53019 -30.22397 -29.65792 -29.40526 -26.18528 -24.20377 -23.19898 -21.41603 -20.99926 -18.81561 -17.76061 -17.69127 -16.64929 -15.87573 -15.48080 -14.94845 -14.79009 -14.68309 -14.08420 -13.49830 -13.43360 -13.16944 -12.75422 -12.66658 -12.55103 -12.37906 -12.08185 -11.85813 -11.80017 -11.69527 -11.43328 -11.27756 -11.17685 -10.98131 -10.76523 -10.48826 -9.95430 -9.47562 -9.42316 -9.01417 -8.46875 -7.70424 -7.50898 -6.95691 -4.62390 2.21893 2.59278 2.69061 2.90018 2.95128 2.97210 2.99414 3.28811 3.68104 3.77089 4.07138 4.50056 4.81640 4.94952 5.09119 5.28164 5.34790 5.38480 5.48833 5.62708 5.76334 5.81884 5.94615 6.00628 6.08302 6.22333 6.31857 6.75805 6.82616 6.86365 7.00585 7.07897 7.42366 7.44939 7.54905 7.68590 7.84340 7.97089 8.07572 8.42127 8.63381 8.73053 8.87240 9.96194 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035238 B = 0.003879 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.415946 B = 7216.713669 C = 7667.393068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.072 3.928 3 N -0.618 5.618 4 C 0.123 3.877 5 C -0.046 4.046 6 C 0.217 3.783 7 N -0.445 5.445 8 C 0.575 3.425 9 O -0.562 6.562 10 C -0.275 4.275 11 C -0.042 4.042 12 C -0.172 4.172 13 C 0.128 3.872 14 C -0.448 4.448 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.780 5.780 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.231 4.231 23 C -0.084 4.084 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.128 0.872 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.286 0.714 36 H 0.098 0.902 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.276 -4.555 -8.118 9.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.050 4.050 3 N -0.352 5.352 4 C -0.002 4.002 5 C -0.087 4.087 6 C -0.101 4.101 7 N -0.122 5.122 8 C 0.370 3.630 9 O -0.442 6.442 10 C -0.279 4.279 11 C -0.062 4.062 12 C -0.192 4.192 13 C 0.125 3.875 14 C -0.477 4.477 15 H 0.101 0.899 16 C -0.148 4.148 17 N -0.404 5.404 18 Si 0.739 3.261 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.250 4.250 23 C -0.102 4.102 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.145 0.855 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.115 0.885 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.034 -2.844 -9.367 9.998 hybrid contribution 0.119 -0.636 1.086 1.264 sum -1.915 -3.480 -8.281 9.185 Atomic orbital electron populations 1.22266 0.96441 1.02287 1.02449 1.22488 0.94080 0.83169 1.05302 1.47799 1.66044 1.14107 1.07207 1.21111 0.94338 0.98924 0.85843 1.19768 1.02297 0.99126 0.87513 1.29090 0.93124 0.93556 0.94357 1.81208 1.08674 1.10036 1.12287 1.18792 0.74496 0.86695 0.82992 1.90670 1.51537 1.16326 1.85646 1.18855 1.07734 1.03639 0.97662 1.20434 0.95896 0.96850 0.92974 1.21045 1.01716 0.99438 0.96952 1.17812 0.87857 0.90697 0.91179 1.19799 1.36132 0.98073 0.93674 0.89896 1.26063 0.92693 0.95230 1.00851 1.69719 1.31093 1.11102 1.28457 0.86185 0.79958 0.80580 0.79355 1.19062 1.20069 1.18419 1.20766 1.02239 1.04223 0.97799 1.21238 0.97978 0.94007 0.96933 0.92636 0.91433 0.91579 0.91630 0.85521 0.90302 0.89177 0.86880 0.87243 0.88540 0.86097 0.90310 0.88430 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.16 37.16 0.34 -1.47 16 2 C 0.07 0.83 5.59 -4.04 -0.02 0.80 16 3 N -0.62 -8.63 2.49 -174.87 -0.44 -9.07 16 4 C 0.12 1.39 5.40 -4.04 -0.02 1.37 16 5 C -0.05 -0.43 6.03 -29.52 -0.18 -0.61 16 6 C 0.22 2.49 15.43 -20.76 -0.32 2.17 16 7 N -0.44 -6.30 18.54 42.15 0.78 -5.52 16 8 C 0.57 10.92 7.43 -12.42 -0.09 10.82 16 9 O -0.56 -12.35 16.27 5.29 0.09 -12.26 16 10 C -0.27 -5.73 5.59 -104.73 -0.59 -6.32 16 11 C -0.04 -0.96 9.53 -39.61 -0.38 -1.34 16 12 C -0.17 -4.19 8.59 -39.27 -0.34 -4.53 16 13 C 0.13 3.09 5.54 -106.80 -0.59 2.50 16 14 C -0.45 -10.78 9.05 -37.75 -0.34 -11.12 16 15 H 0.08 1.88 7.87 -52.49 -0.41 1.47 16 16 C 0.07 1.66 5.25 -17.31 -0.09 1.56 16 17 N -0.78 -18.85 10.89 55.56 0.61 -18.24 16 18 Si 0.92 17.14 29.58 -169.99 -5.03 12.12 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 20 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 22 C -0.23 -4.96 9.73 -39.27 -0.38 -5.34 16 23 C -0.08 -1.61 7.38 -39.61 -0.29 -1.90 16 24 H 0.05 0.51 7.73 -51.93 -0.40 0.11 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.81 7.11 -51.93 -0.37 0.44 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.13 1.72 3.89 -52.72 -0.21 1.51 16 29 H 0.08 0.70 7.66 -51.93 -0.40 0.30 16 30 H 0.09 1.19 7.34 -51.93 -0.38 0.81 16 31 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 2.16 7.93 -52.49 -0.42 1.74 16 34 H 0.12 3.05 6.28 -52.48 -0.33 2.72 16 35 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 36 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 37 H 0.12 1.94 2.81 -52.49 -0.15 1.79 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -28.67 316.31 -6.83 -35.49 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.31 Total: 6.13 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -3.29 Total: -13.41 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.95 Total: -32.83 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.12 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.67 -6.83 -35.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270274714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.974 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds