Wall clock time and date at job start Mon Mar 30 2020 01:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46674 * 2 1 4 4 C 1.46501 * 119.99832 * 280.70225 * 3 2 1 5 5 C 1.53000 * 109.47428 * 270.00392 * 4 3 2 6 6 C 1.47201 * 109.47043 * 180.02562 * 5 4 3 7 7 N 5.65191 * 109.56893 * 308.49729 * 2 1 3 8 8 C 1.34776 * 119.99999 * 100.71485 * 3 2 1 9 9 O 1.21583 * 119.99904 * 186.64161 * 8 3 2 10 10 C 1.47642 * 120.00154 * 6.63573 * 8 3 2 11 11 C 1.40013 * 119.89685 * 148.74630 * 10 8 3 12 12 C 1.36315 * 120.10623 * 180.25517 * 11 10 8 13 13 C 1.40890 * 119.89382 * 359.51983 * 12 11 10 14 14 C 1.41111 * 120.10344 * 180.22771 * 13 12 11 15 15 H 1.08001 * 119.99763 * 209.69673 * 14 13 12 16 16 C 1.40221 * 119.99996 * 29.70189 * 14 13 12 17 17 N 1.30651 * 120.00019 * 10.74880 * 16 14 13 18 18 Si 1.86804 * 120.00031 * 190.75244 * 16 14 13 19 19 H 1.48492 * 109.47167 * 89.99848 * 18 16 14 20 20 H 1.48497 * 109.46812 * 210.00079 * 18 16 14 21 21 H 1.48502 * 109.46793 * 329.99488 * 18 16 14 22 22 C 1.40892 * 119.79005 * 0.50055 * 13 12 11 23 23 C 1.36318 * 119.88985 * 359.73229 * 22 13 12 24 24 H 1.08994 * 109.47071 * 59.99808 * 1 2 3 25 25 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47079 * 300.00161 * 1 2 3 27 27 H 1.08991 * 109.46875 * 239.99559 * 2 1 3 28 28 H 1.09003 * 109.47004 * 119.99956 * 2 1 3 29 29 H 1.08997 * 109.46937 * 30.00863 * 4 3 2 30 30 H 1.09007 * 109.46544 * 150.00562 * 4 3 2 31 31 H 1.08998 * 109.46727 * 300.00339 * 5 4 3 32 32 H 1.09003 * 109.46507 * 60.00145 * 5 4 3 33 33 H 1.07999 * 119.94270 * 359.97438 * 11 10 8 34 34 H 1.08003 * 120.05332 * 179.71924 * 12 11 10 35 35 H 0.97000 * 119.99585 * 179.97438 * 17 16 14 36 36 H 1.07997 * 120.05066 * 179.70916 * 22 13 12 37 37 H 1.07999 * 119.94101 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0402 2.1504 -1.2467 5 6 3.3842 1.9457 -1.9487 6 6 3.4064 2.7190 -3.2010 7 7 3.4231 3.3150 -4.1679 8 6 2.4474 1.9443 1.1468 9 8 2.7384 3.1245 1.1729 10 6 2.5642 1.1280 2.3715 11 6 3.5476 1.4308 3.3209 12 6 3.6626 0.6767 4.4507 13 6 2.7832 -0.4026 4.6670 14 6 2.8952 -1.1831 5.8373 15 1 2.6093 -2.2245 5.8211 16 6 3.3775 -0.6067 7.0210 17 7 3.5243 0.6889 7.1041 18 14 3.8103 -1.6912 8.4792 19 1 5.2360 -2.0964 8.3887 20 1 3.5888 -0.9376 9.7394 21 1 2.9499 -2.9015 8.4684 22 6 1.7955 -0.7037 3.7085 23 6 1.6913 0.0532 2.5795 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.2348 1.8103 -1.8976 30 1 1.9045 3.2086 -1.0231 31 1 4.1895 2.2858 -1.2977 32 1 3.5198 0.8875 -2.1722 33 1 4.2192 2.2603 3.1557 34 1 4.4245 0.9083 5.1804 35 1 3.8576 1.0876 7.9232 36 1 1.1222 -1.5330 3.8678 37 1 0.9342 -0.1766 1.8445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270274714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:43 Heat of formation + Delta-G solvation = 12.276805 kcal Electronic energy + Delta-G solvation = -20041.869712 eV Core-core repulsion = 16977.125351 eV Total energy + Delta-G solvation = -3064.744360 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25452 -38.97321 -37.91710 -37.04086 -35.63457 -33.60773 -31.87713 -31.10299 -30.69603 -27.79448 -25.35140 -24.33980 -23.01986 -22.59055 -20.16864 -19.39435 -18.67224 -18.02555 -17.19588 -17.10298 -16.12753 -16.01672 -15.89571 -15.41057 -14.92150 -14.83847 -14.47807 -14.27197 -13.77704 -13.65688 -13.58737 -13.34668 -13.33301 -13.21763 -12.81314 -12.78287 -12.65806 -12.48908 -12.25939 -11.85828 -11.81652 -11.57842 -11.14616 -11.11074 -10.54152 -9.68757 -9.41532 -9.23270 -8.66642 -6.43112 0.55423 1.18771 1.41491 1.45321 1.55360 1.63574 1.78150 2.11100 2.18969 2.20917 2.80438 3.14976 3.69886 3.88192 4.07176 4.17220 4.28802 4.45406 4.48136 4.51642 4.54604 4.76184 4.85696 4.98248 5.03586 5.06257 5.09846 5.15181 5.26436 5.33545 5.50713 5.67317 5.74334 5.84656 6.03704 6.08190 6.28895 6.55122 6.55931 6.64723 6.85927 6.96920 7.41649 8.27747 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035238 B = 0.003879 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.415946 B = 7216.713669 C = 7667.393068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.065 3.935 3 N -0.603 5.603 4 C 0.120 3.880 5 C -0.035 4.035 6 C 0.244 3.756 7 N -0.492 5.492 8 C 0.574 3.426 9 O -0.599 6.599 10 C -0.278 4.278 11 C -0.056 4.056 12 C -0.194 4.194 13 C 0.100 3.900 14 C -0.480 4.480 15 H 0.090 0.910 16 C 0.031 3.969 17 N -0.819 5.819 18 Si 0.988 3.012 19 H -0.262 1.262 20 H -0.272 1.272 21 H -0.252 1.252 22 C -0.241 4.241 23 C -0.067 4.067 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.043 0.957 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.147 0.853 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.290 0.710 36 H 0.116 0.884 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 -6.576 -9.796 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.056 4.056 3 N -0.335 5.335 4 C -0.004 4.004 5 C -0.076 4.076 6 C -0.073 4.073 7 N -0.171 5.171 8 C 0.368 3.632 9 O -0.483 6.483 10 C -0.282 4.282 11 C -0.076 4.076 12 C -0.214 4.214 13 C 0.097 3.903 14 C -0.509 4.509 15 H 0.108 0.892 16 C -0.186 4.186 17 N -0.444 5.444 18 Si 0.808 3.192 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.175 1.175 22 C -0.260 4.260 23 C -0.085 4.085 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.062 0.938 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.133 0.867 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.164 0.836 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.134 0.866 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.329 -4.894 -11.093 12.573 hybrid contribution 0.465 0.028 1.424 1.498 sum -2.864 -4.865 -9.669 11.196 Atomic orbital electron populations 1.22265 0.95020 1.03838 1.02219 1.22675 0.95144 0.81386 1.06410 1.47719 1.64060 1.15179 1.06505 1.21298 0.96549 0.97567 0.84962 1.19778 1.00866 1.00879 0.86092 1.29277 0.91687 0.92417 0.93950 1.81247 1.10169 1.11591 1.14054 1.18520 0.74859 0.85918 0.83912 1.90656 1.53421 1.17796 1.86381 1.19182 1.06850 1.04009 0.98177 1.20521 0.96887 0.96704 0.93440 1.20942 1.02267 1.00805 0.97341 1.18161 0.88710 0.91006 0.92404 1.20085 1.37874 0.98536 0.94393 0.89241 1.26938 0.91922 0.96307 1.03400 1.69799 1.32298 1.12836 1.29498 0.85103 0.79682 0.78743 0.75654 1.18678 1.19695 1.17547 1.21042 1.01896 1.05169 0.97888 1.21663 0.97791 0.92294 0.96737 0.90880 0.89039 0.93832 0.87248 0.87650 0.86661 0.91400 0.87759 0.83554 0.89195 0.88189 0.89879 0.86625 0.81705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 9.16 71.98 0.66 -2.11 16 2 C 0.06 1.19 5.59 86.38 0.48 1.67 16 3 N -0.60 -14.97 2.49 -825.44 -2.05 -17.02 16 4 C 0.12 2.30 5.40 86.38 0.47 2.77 16 5 C -0.04 -0.55 6.03 28.79 0.17 -0.37 16 6 C 0.24 5.01 15.43 89.44 1.38 6.39 16 7 N -0.49 -13.22 18.54 20.00 0.37 -12.85 16 8 C 0.57 21.23 7.43 86.73 0.64 21.87 16 9 O -0.60 -26.47 16.27 -3.98 -0.06 -26.54 16 10 C -0.28 -11.56 5.59 -19.93 -0.11 -11.67 16 11 C -0.06 -2.67 9.53 22.25 0.21 -2.46 16 12 C -0.19 -9.93 8.59 22.47 0.19 -9.74 16 13 C 0.10 4.99 5.54 -21.28 -0.12 4.87 16 14 C -0.48 -23.67 9.05 23.46 0.21 -23.46 16 15 H 0.09 4.11 7.87 -2.91 -0.02 4.09 16 16 C 0.03 1.44 5.25 85.35 0.45 1.89 16 17 N -0.82 -41.30 10.89 21.87 0.24 -41.07 16 18 Si 0.99 35.47 29.58 68.60 2.03 37.50 16 19 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 20 H -0.27 -9.50 7.11 99.48 0.71 -8.80 16 21 H -0.25 -8.62 7.11 99.48 0.71 -7.91 16 22 C -0.24 -10.24 9.73 22.47 0.22 -10.02 16 23 C -0.07 -2.50 7.38 22.25 0.16 -2.34 16 24 H 0.07 0.94 7.73 -2.39 -0.02 0.93 16 25 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.04 0.90 7.11 -2.39 -0.02 0.89 16 27 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.11 2.46 3.89 -3.13 -0.01 2.45 16 29 H 0.12 1.44 7.66 -2.39 -0.02 1.42 16 30 H 0.07 1.67 7.34 -2.38 -0.02 1.65 16 31 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 4.27 7.93 -2.91 -0.02 4.24 16 34 H 0.10 5.43 6.28 -2.91 -0.02 5.41 16 35 H 0.29 13.29 8.29 -92.71 -0.77 12.52 16 36 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.17 4.69 2.81 -2.91 -0.01 4.68 16 Total: -1.00 -66.41 316.31 6.64 -59.77 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 1.09 Total: 22.92 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 5.03 Total: -22.71 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -1.45 Total: -70.94 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.06 Total: -26.54 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.50 kcal Total: -66.41 6.64 -59.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270274714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.045 kcal (2) G-P(sol) polarization free energy of solvation -66.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds