Wall clock time and date at job start Mon Mar 30 2020 01:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47353 * 2 1 4 4 N 1.46496 * 109.47288 * 179.97438 * 3 2 1 5 5 C 1.46498 * 120.00310 * 279.70239 * 4 3 2 6 6 C 1.47200 * 109.47063 * 274.12617 * 5 4 3 7 7 N 5.23734 * 124.79947 * 35.43077 * 2 1 3 8 8 C 1.34779 * 120.00066 * 99.69781 * 4 3 2 9 9 O 1.21583 * 120.00196 * 186.62851 * 8 4 3 10 10 C 1.47645 * 119.99615 * 6.63277 * 8 4 3 11 11 C 1.40013 * 119.89834 * 150.02543 * 10 8 4 12 12 C 1.36319 * 120.10855 * 180.25556 * 11 10 8 13 13 C 1.40889 * 119.88808 * 359.51190 * 12 11 10 14 14 C 1.41111 * 120.09806 * 180.23173 * 13 12 11 15 15 H 1.07995 * 119.99661 * 206.67723 * 14 13 12 16 16 C 1.40232 * 120.00025 * 26.68481 * 14 13 12 17 17 N 1.30649 * 119.99691 * 12.00824 * 16 14 13 18 18 Si 1.86793 * 119.99848 * 192.00559 * 16 14 13 19 19 H 1.48495 * 109.47040 * 90.00047 * 18 16 14 20 20 H 1.48499 * 109.47236 * 210.00082 * 18 16 14 21 21 H 1.48503 * 109.47527 * 330.00061 * 18 16 14 22 22 C 1.40884 * 119.79413 * 0.50414 * 13 12 11 23 23 C 1.36315 * 119.89386 * 359.73099 * 22 13 12 24 24 H 1.08997 * 109.46713 * 299.99841 * 1 2 3 25 25 H 1.08994 * 109.46831 * 59.99578 * 1 2 3 26 26 H 1.08995 * 109.47210 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46713 * 240.00158 * 2 1 3 28 28 H 1.09006 * 109.47158 * 120.00209 * 2 1 3 29 29 H 1.09008 * 109.46624 * 60.00220 * 3 2 1 30 30 H 1.08997 * 109.47248 * 300.00467 * 3 2 1 31 31 H 1.09001 * 109.47141 * 34.13039 * 5 4 3 32 32 H 1.09001 * 109.47296 * 154.12799 * 5 4 3 33 33 H 1.08003 * 119.94108 * 359.96620 * 11 10 8 34 34 H 1.07995 * 120.04991 * 179.72007 * 12 11 10 35 35 H 0.97001 * 119.99235 * 179.97438 * 17 16 14 36 36 H 1.08004 * 120.04969 * 179.70809 * 22 13 12 37 37 H 1.08002 * 119.94424 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2371 1.2288 1.2515 6 6 4.3957 2.5133 1.9527 7 7 4.5190 3.5043 2.4932 8 6 4.1795 1.6389 -1.1497 9 8 5.3892 1.5196 -1.1731 10 6 3.4491 1.9989 -2.3813 11 6 4.0722 2.7860 -3.3573 12 6 3.4001 3.1253 -4.4937 13 6 2.0798 2.6741 -4.6898 14 6 1.3817 3.0186 -5.8666 15 1 0.3029 3.0688 -5.8594 16 6 2.0886 3.2958 -7.0456 17 7 3.3613 3.0118 -7.1261 18 14 1.2106 4.0709 -8.5007 19 1 1.2930 5.5500 -8.3979 20 1 1.8552 3.6257 -9.7623 21 1 -0.2145 3.6533 -8.4989 22 6 1.4570 1.8827 -3.7046 23 6 2.1354 1.5525 -2.5693 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9562 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 3.6818 0.5358 1.8836 32 1 5.2196 0.8116 1.0308 33 1 5.0854 3.1286 -3.2075 34 1 3.8800 3.7361 -5.2439 35 1 3.8502 3.2032 -7.9418 36 1 0.4434 1.5385 -3.8485 37 1 1.6588 0.9455 -1.8137 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270286914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:14 Heat of formation + Delta-G solvation = 31.015439 kcal Electronic energy + Delta-G solvation = -20284.189519 eV Core-core repulsion = 17220.257727 eV Total energy + Delta-G solvation = -3063.931792 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.97580 -37.36654 -36.56289 -35.95055 -33.92114 -32.91125 -30.46610 -29.77408 -28.21936 -26.26260 -25.34049 -21.98104 -21.41894 -21.28043 -19.37633 -17.77074 -17.51687 -16.68311 -16.19351 -15.57667 -15.14326 -14.56991 -14.17357 -13.93205 -13.69992 -13.47360 -12.95658 -12.79661 -12.72189 -12.56708 -12.33595 -12.03028 -11.80830 -11.71834 -11.44312 -11.42232 -11.33637 -11.18062 -10.92943 -10.75266 -10.46160 -9.97763 -9.50668 -9.40266 -9.08461 -8.65559 -7.71302 -7.54689 -6.98077 -4.63879 2.18918 2.48516 2.82164 2.89008 2.94380 2.96985 2.98428 3.56058 3.61515 3.74661 4.12714 4.48637 4.91081 4.95398 5.07710 5.28173 5.36355 5.45309 5.49865 5.72183 5.77184 5.85154 6.03702 6.04705 6.11976 6.22266 6.35430 6.66342 6.79348 6.81520 7.00575 7.07374 7.41004 7.53101 7.56492 7.62659 7.83217 7.93764 8.05649 8.41318 8.61751 8.72073 8.78936 9.91967 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024117 B = 0.004684 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.709889 B = 5976.252425 C = 6682.571914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.147 4.147 3 C 0.073 3.927 4 N -0.616 5.616 5 C 0.208 3.792 6 C 0.195 3.805 7 N -0.433 5.433 8 C 0.577 3.423 9 O -0.558 6.558 10 C -0.279 4.279 11 C -0.040 4.040 12 C -0.176 4.176 13 C 0.126 3.874 14 C -0.443 4.443 15 H 0.084 0.916 16 C 0.071 3.929 17 N -0.775 5.775 18 Si 0.916 3.084 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.232 4.232 23 C -0.084 4.084 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.131 0.869 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.286 0.714 36 H 0.098 0.902 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.013 -5.306 8.344 11.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.185 4.185 3 C -0.049 4.049 4 N -0.350 5.350 5 C 0.081 3.919 6 C -0.124 4.124 7 N -0.111 5.111 8 C 0.373 3.627 9 O -0.438 6.438 10 C -0.283 4.283 11 C -0.060 4.060 12 C -0.196 4.196 13 C 0.123 3.877 14 C -0.471 4.471 15 H 0.102 0.898 16 C -0.149 4.149 17 N -0.399 5.399 18 Si 0.740 3.260 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.252 4.252 23 C -0.102 4.102 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.134 0.866 32 H 0.146 0.854 33 H 0.114 0.886 34 H 0.143 0.857 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.971 -3.896 8.941 10.530 hybrid contribution -0.351 -0.089 -0.876 0.948 sum -4.321 -3.985 8.065 9.979 Atomic orbital electron populations 1.21729 0.94989 1.01978 1.02327 1.22008 0.96380 0.97274 1.02874 1.22684 0.79128 0.97395 1.05664 1.47803 1.06781 1.74486 1.05949 1.18745 1.01543 0.86540 0.85075 1.30063 0.93031 0.95749 0.93592 1.81117 1.08880 1.11071 1.10014 1.18869 0.86654 0.74106 0.83027 1.90670 1.14770 1.52505 1.85819 1.18785 0.96511 1.16143 0.96878 1.20442 0.97350 0.95436 0.92730 1.21113 0.96714 1.04649 0.97077 1.17825 0.91941 0.86582 0.91364 1.19847 0.95143 1.38556 0.93558 0.89821 1.26100 0.94826 0.93122 1.00895 1.69725 1.08977 1.32683 1.28507 0.86172 0.80527 0.80093 0.79239 1.19014 1.19997 1.18345 1.20731 1.00471 1.06636 0.97354 1.21330 0.93197 0.98637 0.97066 0.92704 0.91889 0.92449 0.90590 0.91692 0.91667 0.85210 0.86628 0.85411 0.88578 0.85716 0.90232 0.88406 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.84 37.16 0.37 -1.01 16 2 C -0.15 -1.50 5.28 -26.73 -0.14 -1.65 16 3 C 0.07 0.92 4.87 -4.05 -0.02 0.90 16 4 N -0.62 -9.10 2.44 -178.22 -0.44 -9.53 16 5 C 0.21 2.38 5.97 -6.83 -0.04 2.34 16 6 C 0.20 2.77 15.76 -20.78 -0.33 2.44 16 7 N -0.43 -7.23 18.53 42.13 0.78 -6.45 16 8 C 0.58 11.38 7.45 -12.42 -0.09 11.28 16 9 O -0.56 -12.48 16.19 5.29 0.09 -12.39 16 10 C -0.28 -6.02 5.61 -104.73 -0.59 -6.61 16 11 C -0.04 -0.95 9.52 -39.61 -0.38 -1.33 16 12 C -0.18 -4.39 8.61 -39.27 -0.34 -4.73 16 13 C 0.13 3.10 5.57 -106.80 -0.60 2.51 16 14 C -0.44 -10.74 9.06 -37.74 -0.34 -11.08 16 15 H 0.08 1.91 7.88 -52.49 -0.41 1.50 16 16 C 0.07 1.65 5.24 -17.31 -0.09 1.56 16 17 N -0.78 -18.77 10.75 55.56 0.60 -18.18 16 18 Si 0.92 17.21 29.58 -169.99 -5.03 12.19 16 19 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 20 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 22 C -0.23 -5.06 9.73 -39.27 -0.38 -5.44 16 23 C -0.08 -1.66 7.41 -39.61 -0.29 -1.95 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.62 7.86 -51.93 -0.41 0.21 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.91 7.13 -51.93 -0.37 0.54 16 28 H 0.06 0.55 7.76 -51.93 -0.40 0.15 16 29 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.13 1.92 3.90 -53.29 -0.21 1.71 16 31 H 0.12 0.82 7.72 -51.93 -0.40 0.42 16 32 H 0.13 1.47 7.23 -51.93 -0.38 1.09 16 33 H 0.10 2.25 7.91 -52.48 -0.42 1.84 16 34 H 0.13 3.22 6.09 -52.49 -0.32 2.90 16 35 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 36 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 37 H 0.13 2.03 2.30 -52.49 -0.12 1.90 16 LS Contribution 315.32 15.07 4.75 4.75 Total: -1.00 -29.22 315.32 -6.77 -35.99 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -4.26 Total: 6.40 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -3.26 Total: -12.78 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.94 Total: -34.16 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.22 -6.77 -35.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270286914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.010 kcal (2) G-P(sol) polarization free energy of solvation -29.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds