Wall clock time and date at job start Mon Mar 30 2020 01:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47353 * 2 1 4 4 N 1.46496 * 109.47288 * 179.97438 * 3 2 1 5 5 C 1.46498 * 120.00310 * 279.70239 * 4 3 2 6 6 C 1.47200 * 109.47063 * 274.12617 * 5 4 3 7 7 N 5.23734 * 124.79947 * 35.43077 * 2 1 3 8 8 C 1.34779 * 120.00066 * 99.69781 * 4 3 2 9 9 O 1.21583 * 120.00196 * 186.62851 * 8 4 3 10 10 C 1.47645 * 119.99615 * 6.63277 * 8 4 3 11 11 C 1.40013 * 119.89834 * 150.02543 * 10 8 4 12 12 C 1.36319 * 120.10855 * 180.25556 * 11 10 8 13 13 C 1.40889 * 119.88808 * 359.51190 * 12 11 10 14 14 C 1.41111 * 120.09806 * 180.23173 * 13 12 11 15 15 H 1.07995 * 119.99661 * 206.67723 * 14 13 12 16 16 C 1.40232 * 120.00025 * 26.68481 * 14 13 12 17 17 N 1.30649 * 119.99691 * 12.00824 * 16 14 13 18 18 Si 1.86793 * 119.99848 * 192.00559 * 16 14 13 19 19 H 1.48495 * 109.47040 * 90.00047 * 18 16 14 20 20 H 1.48499 * 109.47236 * 210.00082 * 18 16 14 21 21 H 1.48503 * 109.47527 * 330.00061 * 18 16 14 22 22 C 1.40884 * 119.79413 * 0.50414 * 13 12 11 23 23 C 1.36315 * 119.89386 * 359.73099 * 22 13 12 24 24 H 1.08997 * 109.46713 * 299.99841 * 1 2 3 25 25 H 1.08994 * 109.46831 * 59.99578 * 1 2 3 26 26 H 1.08995 * 109.47210 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46713 * 240.00158 * 2 1 3 28 28 H 1.09006 * 109.47158 * 120.00209 * 2 1 3 29 29 H 1.09008 * 109.46624 * 60.00220 * 3 2 1 30 30 H 1.08997 * 109.47248 * 300.00467 * 3 2 1 31 31 H 1.09001 * 109.47141 * 34.13039 * 5 4 3 32 32 H 1.09001 * 109.47296 * 154.12799 * 5 4 3 33 33 H 1.08003 * 119.94108 * 359.96620 * 11 10 8 34 34 H 1.07995 * 120.04991 * 179.72007 * 12 11 10 35 35 H 0.97001 * 119.99235 * 179.97438 * 17 16 14 36 36 H 1.08004 * 120.04969 * 179.70809 * 22 13 12 37 37 H 1.08002 * 119.94424 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2371 1.2288 1.2515 6 6 4.3957 2.5133 1.9527 7 7 4.5190 3.5043 2.4932 8 6 4.1795 1.6389 -1.1497 9 8 5.3892 1.5196 -1.1731 10 6 3.4491 1.9989 -2.3813 11 6 4.0722 2.7860 -3.3573 12 6 3.4001 3.1253 -4.4937 13 6 2.0798 2.6741 -4.6898 14 6 1.3817 3.0186 -5.8666 15 1 0.3029 3.0688 -5.8594 16 6 2.0886 3.2958 -7.0456 17 7 3.3613 3.0118 -7.1261 18 14 1.2106 4.0709 -8.5007 19 1 1.2930 5.5500 -8.3979 20 1 1.8552 3.6257 -9.7623 21 1 -0.2145 3.6533 -8.4989 22 6 1.4570 1.8827 -3.7046 23 6 2.1354 1.5525 -2.5693 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9562 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 3.6818 0.5358 1.8836 32 1 5.2196 0.8116 1.0308 33 1 5.0854 3.1286 -3.2075 34 1 3.8800 3.7361 -5.2439 35 1 3.8502 3.2032 -7.9418 36 1 0.4434 1.5385 -3.8485 37 1 1.6588 0.9455 -1.8137 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270286914.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:14 Heat of formation + Delta-G solvation = 15.223146 kcal Electronic energy + Delta-G solvation = -20284.874325 eV Core-core repulsion = 17220.257727 eV Total energy + Delta-G solvation = -3064.616597 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.41076 -39.02631 -37.90392 -37.17214 -35.62538 -33.94460 -32.12337 -31.47748 -29.50723 -27.61620 -26.71576 -23.45442 -22.99360 -22.47505 -20.85338 -19.48614 -18.66648 -18.12469 -17.46035 -17.21489 -16.45910 -16.00027 -15.52821 -15.23442 -15.14086 -14.81450 -14.43399 -14.12526 -13.94435 -13.77110 -13.72963 -13.58909 -13.26604 -12.98959 -12.81796 -12.70950 -12.58608 -12.33595 -12.24846 -12.08669 -11.63912 -11.51079 -11.19386 -11.13414 -10.65861 -9.92547 -9.48800 -9.31417 -8.71131 -6.47268 0.48478 1.15316 1.30718 1.39239 1.43387 1.53692 1.72186 2.00994 2.17302 2.41289 2.73945 3.07832 3.66582 3.85704 4.03681 4.18250 4.37104 4.40227 4.47840 4.53254 4.60612 4.66357 4.86989 5.00123 5.04087 5.08711 5.21725 5.28222 5.29807 5.34896 5.55028 5.59666 5.63854 5.79756 5.97184 6.03911 6.23303 6.39036 6.46964 6.60110 6.80929 6.92631 7.26432 8.21711 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.024117 B = 0.004684 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.709889 B = 5976.252425 C = 6682.571914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.142 4.142 3 C 0.068 3.932 4 N -0.606 5.606 5 C 0.207 3.793 6 C 0.216 3.784 7 N -0.482 5.482 8 C 0.577 3.423 9 O -0.591 6.591 10 C -0.288 4.288 11 C -0.057 4.057 12 C -0.200 4.200 13 C 0.099 3.901 14 C -0.474 4.474 15 H 0.091 0.909 16 C 0.031 3.969 17 N -0.813 5.813 18 Si 0.989 3.011 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.250 1.250 22 C -0.243 4.243 23 C -0.067 4.067 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.177 0.823 32 H 0.132 0.868 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.292 0.708 36 H 0.118 0.882 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.948 -6.843 10.043 13.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.180 4.180 3 C -0.053 4.053 4 N -0.337 5.337 5 C 0.082 3.918 6 C -0.103 4.103 7 N -0.161 5.161 8 C 0.372 3.628 9 O -0.473 6.473 10 C -0.292 4.292 11 C -0.076 4.076 12 C -0.219 4.219 13 C 0.096 3.904 14 C -0.502 4.502 15 H 0.109 0.891 16 C -0.186 4.186 17 N -0.437 5.437 18 Si 0.809 3.191 19 H -0.188 1.188 20 H -0.194 1.194 21 H -0.174 1.174 22 C -0.262 4.262 23 C -0.084 4.084 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.122 0.878 31 H 0.194 0.806 32 H 0.150 0.850 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.103 0.897 36 H 0.136 0.864 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.936 -5.445 10.685 13.381 hybrid contribution 0.279 0.338 -1.230 1.306 sum -5.656 -5.107 9.455 12.144 Atomic orbital electron populations 1.21742 0.93890 1.02863 1.02527 1.21979 0.97203 0.95211 1.03614 1.22815 0.77450 0.99301 1.05721 1.47701 1.07853 1.72566 1.05611 1.19301 1.02539 0.86043 0.83926 1.30510 0.91560 0.95630 0.92585 1.81150 1.10575 1.12522 1.11815 1.18576 0.86105 0.74179 0.83977 1.90654 1.16018 1.54076 1.86561 1.19134 0.97438 1.15153 0.97520 1.20522 0.97149 0.96528 0.93421 1.21019 0.97630 1.05904 0.97383 1.18185 0.92032 0.87512 0.92711 1.20149 0.95672 1.40156 0.94232 0.89058 1.26992 0.95333 0.92883 1.03435 1.69801 1.10544 1.33792 1.29602 0.85081 0.79555 0.78873 0.75570 1.18812 1.19398 1.17374 1.21022 1.01516 1.06290 0.97397 1.21770 0.92130 0.97527 0.96984 0.91205 0.93102 0.91272 0.92244 0.88600 0.88931 0.87809 0.80638 0.85025 0.89564 0.87727 0.89687 0.86446 0.81210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.84 71.98 0.71 -1.38 16 2 C -0.14 -2.25 5.28 30.60 0.16 -2.09 16 3 C 0.07 1.45 4.87 86.38 0.42 1.87 16 4 N -0.61 -16.05 2.44 -836.02 -2.04 -18.09 16 5 C 0.21 3.91 5.97 84.57 0.51 4.42 16 6 C 0.22 5.56 15.76 89.45 1.41 6.97 16 7 N -0.48 -15.44 18.53 20.00 0.37 -15.07 16 8 C 0.58 22.20 7.45 86.73 0.65 22.84 16 9 O -0.59 -26.31 16.19 -3.98 -0.06 -26.38 16 10 C -0.29 -12.53 5.61 -19.93 -0.11 -12.64 16 11 C -0.06 -2.83 9.52 22.25 0.21 -2.62 16 12 C -0.20 -10.55 8.61 22.47 0.19 -10.36 16 13 C 0.10 5.02 5.57 -21.28 -0.12 4.90 16 14 C -0.47 -23.60 9.06 23.46 0.21 -23.39 16 15 H 0.09 4.23 7.88 -2.91 -0.02 4.20 16 16 C 0.03 1.45 5.24 85.35 0.45 1.90 16 17 N -0.81 -41.05 10.75 21.87 0.24 -40.82 16 18 Si 0.99 35.57 29.58 68.60 2.03 37.60 16 19 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 20 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 21 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 22 C -0.24 -10.58 9.73 22.47 0.22 -10.36 16 23 C -0.07 -2.56 7.41 22.25 0.16 -2.40 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.05 0.83 7.86 -2.39 -0.02 0.81 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 1.18 7.13 -2.39 -0.02 1.17 16 28 H 0.10 1.00 7.76 -2.38 -0.02 0.98 16 29 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.10 2.79 3.90 -3.67 -0.01 2.78 16 31 H 0.18 1.32 7.72 -2.39 -0.02 1.30 16 32 H 0.13 2.58 7.23 -2.39 -0.02 2.56 16 33 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16 34 H 0.10 5.82 6.09 -2.91 -0.02 5.80 16 35 H 0.29 13.33 8.29 -92.71 -0.77 12.57 16 36 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 37 H 0.17 4.99 2.30 -2.91 -0.01 4.98 16 Total: -1.00 -67.79 315.32 6.69 -61.09 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 1.10 Total: 24.00 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 5.07 Total: -22.33 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -1.44 Total: -73.98 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.06 Total: -26.38 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Total: -67.79 6.69 -61.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270286914.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.317 kcal (2) G-P(sol) polarization free energy of solvation -67.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds