Wall clock time and date at job start Mon Mar 30 2020 01:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35469 * 124.78737 * 2 1 4 4 C 1.36375 * 109.77104 * 180.02562 * 3 2 1 5 5 C 1.46913 * 126.76771 * 180.02562 * 4 3 2 6 6 O 1.21674 * 119.99659 * 179.97438 * 5 4 3 7 7 N 1.34768 * 120.00140 * 359.97290 * 5 4 3 8 8 C 1.46505 * 120.00096 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47151 * 179.97438 * 8 7 5 10 10 C 1.50708 * 109.46891 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99912 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99581 * 180.02562 * 10 9 8 13 13 N 1.31507 * 120.00340 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99654 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47270 * 89.99340 * 14 12 10 16 16 H 1.48500 * 109.47019 * 209.99863 * 14 12 10 17 17 H 1.48505 * 109.47053 * 329.99830 * 14 12 10 18 18 C 1.47435 * 106.46313 * 0.02562 * 4 3 2 19 19 C 1.39279 * 134.01219 * 179.97438 * 18 4 3 20 20 C 1.37750 * 119.67635 * 179.97438 * 19 18 4 21 21 C 1.38756 * 120.29885 * 0.02562 * 20 19 18 22 22 C 1.37762 * 120.63484 * 359.97438 * 21 20 19 23 23 C 1.37962 * 124.78920 * 179.70439 * 2 1 3 24 24 H 1.09002 * 109.47391 * 90.02048 * 1 2 3 25 25 H 1.09001 * 109.46813 * 330.02105 * 1 2 3 26 26 H 1.09004 * 109.47041 * 210.02232 * 1 2 3 27 27 H 1.07998 * 125.11771 * 0.04021 * 3 2 1 28 28 H 0.96995 * 120.00302 * 359.97438 * 7 5 4 29 29 H 1.08992 * 109.47206 * 300.00574 * 8 7 5 30 30 H 1.09005 * 109.46816 * 60.00497 * 8 7 5 31 31 H 1.09001 * 109.47441 * 300.00276 * 9 8 7 32 32 H 1.08999 * 109.47049 * 60.00912 * 9 8 7 33 33 H 0.97003 * 119.99993 * 180.02562 * 13 12 10 34 34 H 1.08004 * 120.15928 * 359.97438 * 19 18 4 35 35 H 1.07994 * 119.85311 * 180.02562 * 20 19 18 36 36 H 1.07998 * 119.68146 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.03548 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1126 0.0000 4 6 3.5551 0.7592 -0.0006 5 6 4.7093 1.6681 -0.0002 6 8 5.8392 1.2165 -0.0004 7 7 4.5168 3.0019 0.0002 8 6 5.6679 3.9082 0.0011 9 6 5.1762 5.3571 0.0007 10 6 6.3603 6.2894 0.0010 11 1 7.3632 5.8885 0.0018 12 6 6.1633 7.6540 0.0013 13 7 4.9421 8.1420 0.0009 14 14 7.6310 8.8095 0.0024 15 1 8.0208 9.1160 -1.3973 16 1 7.2695 10.0682 0.7026 17 1 8.7697 8.1628 0.7029 18 6 3.5923 -0.7146 -0.0016 19 6 4.6181 -1.6568 -0.0029 20 6 4.3108 -2.9996 -0.0031 21 6 2.9868 -3.4147 -0.0025 22 6 1.9623 -2.4937 -0.0011 23 6 2.2521 -1.1330 0.0058 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5135 26 1 -0.3633 -0.8898 0.5142 27 1 1.8668 2.1268 0.0006 28 1 3.6161 3.3620 -0.0001 29 1 6.2708 3.7289 0.8912 30 1 6.2716 3.7296 -0.8888 31 1 4.5735 5.5361 -0.8897 32 1 4.5723 5.5360 0.8903 33 1 4.8036 9.1021 0.0007 34 1 5.6494 -1.3360 -0.0039 35 1 5.1039 -3.7325 -0.0037 36 1 2.7573 -4.4700 -0.0022 37 1 0.9352 -2.8276 -0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273082842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:59 Heat of formation + Delta-G solvation = 13.672379 kcal Electronic energy + Delta-G solvation = -19531.104399 eV Core-core repulsion = 16466.420555 eV Total energy + Delta-G solvation = -3064.683844 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.54975 -38.68874 -37.18386 -34.73429 -33.10557 -32.70288 -30.39653 -29.95603 -28.75971 -26.87732 -24.70884 -22.99963 -22.25360 -21.26376 -20.82734 -19.42328 -17.56656 -16.73198 -16.28089 -15.70672 -15.64968 -15.51600 -14.75575 -14.61789 -14.43004 -14.03220 -14.00783 -13.21673 -13.02122 -12.79290 -12.75210 -12.68153 -12.26668 -11.69865 -11.44520 -11.17102 -11.01421 -11.01104 -10.61771 -10.29327 -9.75813 -9.66064 -9.43177 -9.16061 -8.50108 -8.34990 -8.30872 -7.71313 -6.07989 -4.10250 0.95951 1.49745 2.08480 2.53033 3.30935 3.36876 3.41366 3.64000 3.83113 4.03824 4.42005 4.44512 4.50480 4.63583 4.83951 4.94380 5.04021 5.11057 5.22570 5.29325 5.43630 5.52762 5.63618 5.73294 6.00896 6.34348 6.41627 6.41842 6.51340 6.62292 6.68569 6.79989 6.98253 7.04576 7.07502 7.55197 7.64829 7.91101 8.13795 8.31820 8.81068 8.96124 9.54477 11.03723 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034294 B = 0.003335 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.263696 B = 8392.999344 C = 9183.512810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.476 5.476 3 C 0.102 3.898 4 C -0.218 4.218 5 C 0.580 3.420 6 O -0.552 6.552 7 N -0.722 5.722 8 C 0.124 3.876 9 C 0.012 3.988 10 C -0.520 4.520 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.063 4.063 19 C -0.059 4.059 20 C -0.147 4.147 21 C -0.102 4.102 22 C -0.130 4.130 23 C 0.085 3.915 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.178 0.822 28 H 0.393 0.607 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.261 0.739 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.142 -19.811 0.061 23.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.158 5.158 3 C -0.029 4.029 4 C -0.228 4.228 5 C 0.367 3.633 6 O -0.431 6.431 7 N -0.371 5.371 8 C 0.001 3.999 9 C -0.025 4.025 10 C -0.559 4.559 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.068 4.068 19 C -0.078 4.078 20 C -0.166 4.166 21 C -0.121 4.121 22 C -0.150 4.150 23 C -0.019 4.019 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.196 0.804 28 H 0.226 0.774 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.760 -19.926 0.065 23.137 hybrid contribution 0.055 1.041 -0.014 1.043 sum -11.705 -18.885 0.051 22.218 Atomic orbital electron populations 1.22044 0.76706 1.04557 1.03389 1.43560 1.06265 1.04332 1.61621 1.22143 0.89930 0.91541 0.99282 1.20258 0.92334 0.92590 1.17636 1.17233 0.87610 0.81851 0.76576 1.90732 1.24164 1.76882 1.51333 1.46153 1.11025 1.05471 1.74450 1.21702 0.86821 0.90487 1.00849 1.19326 0.97437 0.87978 0.97755 1.21073 0.92801 0.90901 1.51105 0.92205 1.24991 0.95916 0.98371 0.95026 1.69951 1.20072 1.12842 1.50586 0.86515 0.82739 0.80136 0.78193 1.20571 1.21205 1.19695 1.18797 0.92017 0.91738 1.04230 1.20758 0.99245 0.91504 0.96256 1.20961 0.96340 0.95437 1.03867 1.20782 0.92337 0.98689 1.00321 1.19937 0.99432 0.88902 1.06770 1.18272 0.89836 0.88223 1.05546 0.90863 0.89429 0.89914 0.80447 0.77383 0.92527 0.92535 0.95982 0.95975 0.92895 0.84778 0.85865 0.85829 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 10.99 59.85 0.66 1.10 16 2 N -0.48 -5.04 3.14 -121.59 -0.38 -5.42 16 3 C 0.10 1.20 10.76 -16.62 -0.18 1.02 16 4 C -0.22 -3.41 6.27 -103.31 -0.65 -4.06 16 5 C 0.58 10.96 7.80 -12.75 -0.10 10.86 16 6 O -0.55 -12.32 16.16 5.21 0.08 -12.23 16 7 N -0.72 -13.19 5.54 -61.54 -0.34 -13.53 16 8 C 0.12 2.70 5.61 -4.04 -0.02 2.68 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 14 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 C -0.06 -0.97 6.27 -104.95 -0.66 -1.63 16 19 C -0.06 -0.86 9.85 -39.37 -0.39 -1.25 16 20 C -0.15 -1.69 10.03 -39.57 -0.40 -2.08 16 21 C -0.10 -1.02 10.01 -39.56 -0.40 -1.42 16 22 C -0.13 -1.35 9.91 -39.43 -0.39 -1.74 16 23 C 0.09 1.07 6.79 -83.96 -0.57 0.50 16 24 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.09 0.37 8.13 -51.93 -0.42 -0.05 16 26 H 0.08 0.38 8.03 -51.93 -0.42 -0.03 16 27 H 0.18 1.52 7.38 -52.49 -0.39 1.13 16 28 H 0.39 6.03 7.35 -40.82 -0.30 5.73 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.13 2.09 7.45 -52.48 -0.39 1.70 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 0.89 8.02 -52.49 -0.42 0.47 16 LS Contribution 322.17 15.07 4.86 4.86 Total: -1.00 -34.33 322.17 -8.55 -42.89 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -4.84 Total: 1.53 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -3.64 Total: -9.13 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.01 Total: -44.36 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.08 Total: -12.23 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.33 -8.55 -42.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273082842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.558 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds