Wall clock time and date at job start Mon Mar 30 2020 01:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35469 * 124.78737 * 2 1 4 4 C 1.36375 * 109.77104 * 180.02562 * 3 2 1 5 5 C 1.46913 * 126.76771 * 180.02562 * 4 3 2 6 6 O 1.21674 * 119.99659 * 179.97438 * 5 4 3 7 7 N 1.34768 * 120.00140 * 359.97290 * 5 4 3 8 8 C 1.46505 * 120.00096 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47151 * 179.97438 * 8 7 5 10 10 C 1.50708 * 109.46891 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99912 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99581 * 180.02562 * 10 9 8 13 13 N 1.31507 * 120.00340 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99654 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47270 * 89.99340 * 14 12 10 16 16 H 1.48500 * 109.47019 * 209.99863 * 14 12 10 17 17 H 1.48505 * 109.47053 * 329.99830 * 14 12 10 18 18 C 1.47435 * 106.46313 * 0.02562 * 4 3 2 19 19 C 1.39279 * 134.01219 * 179.97438 * 18 4 3 20 20 C 1.37750 * 119.67635 * 179.97438 * 19 18 4 21 21 C 1.38756 * 120.29885 * 0.02562 * 20 19 18 22 22 C 1.37762 * 120.63484 * 359.97438 * 21 20 19 23 23 C 1.37962 * 124.78920 * 179.70439 * 2 1 3 24 24 H 1.09002 * 109.47391 * 90.02048 * 1 2 3 25 25 H 1.09001 * 109.46813 * 330.02105 * 1 2 3 26 26 H 1.09004 * 109.47041 * 210.02232 * 1 2 3 27 27 H 1.07998 * 125.11771 * 0.04021 * 3 2 1 28 28 H 0.96995 * 120.00302 * 359.97438 * 7 5 4 29 29 H 1.08992 * 109.47206 * 300.00574 * 8 7 5 30 30 H 1.09005 * 109.46816 * 60.00497 * 8 7 5 31 31 H 1.09001 * 109.47441 * 300.00276 * 9 8 7 32 32 H 1.08999 * 109.47049 * 60.00912 * 9 8 7 33 33 H 0.97003 * 119.99993 * 180.02562 * 13 12 10 34 34 H 1.08004 * 120.15928 * 359.97438 * 19 18 4 35 35 H 1.07994 * 119.85311 * 180.02562 * 20 19 18 36 36 H 1.07998 * 119.68146 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.03548 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2379 1.1126 0.0000 4 6 3.5551 0.7592 -0.0006 5 6 4.7093 1.6681 -0.0002 6 8 5.8392 1.2165 -0.0004 7 7 4.5168 3.0019 0.0002 8 6 5.6679 3.9082 0.0011 9 6 5.1762 5.3571 0.0007 10 6 6.3603 6.2894 0.0010 11 1 7.3632 5.8885 0.0018 12 6 6.1633 7.6540 0.0013 13 7 4.9421 8.1420 0.0009 14 14 7.6310 8.8095 0.0024 15 1 8.0208 9.1160 -1.3973 16 1 7.2695 10.0682 0.7026 17 1 8.7697 8.1628 0.7029 18 6 3.5923 -0.7146 -0.0016 19 6 4.6181 -1.6568 -0.0029 20 6 4.3108 -2.9996 -0.0031 21 6 2.9868 -3.4147 -0.0025 22 6 1.9623 -2.4937 -0.0011 23 6 2.2521 -1.1330 0.0058 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5135 26 1 -0.3633 -0.8898 0.5142 27 1 1.8668 2.1268 0.0006 28 1 3.6161 3.3620 -0.0001 29 1 6.2708 3.7289 0.8912 30 1 6.2716 3.7296 -0.8888 31 1 4.5735 5.5361 -0.8897 32 1 4.5723 5.5360 0.8903 33 1 4.8036 9.1021 0.0007 34 1 5.6494 -1.3360 -0.0039 35 1 5.1039 -3.7325 -0.0037 36 1 2.7573 -4.4700 -0.0022 37 1 0.9352 -2.8276 -0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273082842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:59 Heat of formation + Delta-G solvation = -8.305391 kcal Electronic energy + Delta-G solvation = -19532.057426 eV Core-core repulsion = 16466.420555 eV Total energy + Delta-G solvation = -3065.636871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.47719 -40.19138 -38.04774 -36.53075 -34.81832 -33.90135 -31.67897 -31.22261 -29.86877 -27.85368 -26.46728 -24.06042 -23.50690 -22.58118 -22.17011 -20.71293 -18.71684 -18.44082 -17.56717 -16.78659 -16.63591 -16.55432 -16.39533 -16.10954 -16.08879 -15.03594 -14.85815 -14.72731 -14.41512 -14.24216 -13.71286 -13.60272 -13.27596 -13.20252 -12.93880 -12.58700 -12.50275 -12.27703 -12.18563 -11.93297 -11.66361 -11.45645 -10.87667 -10.63842 -10.59592 -10.00807 -9.24885 -8.66972 -8.23818 -6.33746 0.00774 0.57782 1.01991 1.42051 1.42474 1.54089 1.74747 2.30883 2.42752 2.49185 2.97973 3.10907 3.69642 3.70150 3.81821 4.14380 4.27263 4.28894 4.47773 4.49064 4.50458 4.56046 4.63561 4.76459 4.77034 4.79473 4.86453 5.12691 5.31433 5.46837 5.50853 5.58260 5.59514 5.70813 5.72290 5.79915 6.13898 6.17516 6.25147 6.71920 6.79041 7.35200 7.36163 8.88057 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034294 B = 0.003335 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.263696 B = 8392.999344 C = 9183.512810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.466 5.466 3 C 0.135 3.865 4 C -0.273 4.273 5 C 0.579 3.421 6 O -0.599 6.599 7 N -0.714 5.714 8 C 0.143 3.857 9 C 0.025 3.975 10 C -0.548 4.548 11 H 0.056 0.944 12 C 0.009 3.991 13 N -0.925 5.925 14 Si 0.964 3.036 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.268 1.268 18 C -0.096 4.096 19 C -0.102 4.102 20 C -0.139 4.139 21 C -0.103 4.103 22 C -0.118 4.118 23 C 0.072 3.928 24 H 0.089 0.911 25 H 0.108 0.892 26 H 0.101 0.899 27 H 0.212 0.788 28 H 0.408 0.592 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.011 0.989 32 H 0.011 0.989 33 H 0.266 0.734 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.162 0.838 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.728 -20.942 0.073 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.146 5.146 3 C 0.001 3.999 4 C -0.284 4.284 5 C 0.370 3.630 6 O -0.482 6.482 7 N -0.365 5.365 8 C 0.019 3.981 9 C -0.012 4.012 10 C -0.587 4.587 11 H 0.075 0.925 12 C -0.190 4.190 13 N -0.565 5.565 14 Si 0.789 3.211 15 H -0.198 1.198 16 H -0.203 1.203 17 H -0.192 1.192 18 C -0.100 4.100 19 C -0.120 4.120 20 C -0.158 4.158 21 C -0.122 4.122 22 C -0.138 4.138 23 C -0.033 4.033 24 H 0.107 0.893 25 H 0.127 0.873 26 H 0.120 0.880 27 H 0.228 0.772 28 H 0.244 0.756 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.160 0.840 36 H 0.180 0.820 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.408 -21.084 0.075 25.537 hybrid contribution 0.731 1.287 -0.021 1.480 sum -13.677 -19.797 0.054 24.062 Atomic orbital electron populations 1.22472 0.73345 1.06634 1.05071 1.43904 1.08061 1.03225 1.59394 1.22546 0.88731 0.93244 0.95396 1.19996 0.92712 0.92585 1.23064 1.17742 0.88191 0.81915 0.75178 1.90690 1.26345 1.77563 1.53637 1.45888 1.10750 1.05129 1.74692 1.21210 0.87685 0.89620 0.99580 1.19123 0.96358 0.89237 0.96512 1.21473 0.93546 0.92040 1.51603 0.92526 1.25840 0.98845 0.99947 0.94382 1.70044 1.21954 1.13474 1.50986 0.85460 0.79206 0.77947 0.78530 1.19755 1.20344 1.19236 1.19106 0.93861 0.91767 1.05309 1.20727 0.98061 0.93309 0.99940 1.21259 0.98204 0.94318 1.02033 1.21234 0.91245 1.00660 0.99026 1.20422 1.01423 0.87710 1.04260 1.18526 0.88918 0.89696 1.06114 0.89289 0.87344 0.88046 0.77166 0.75564 0.93856 0.93855 0.97057 0.97041 0.92498 0.87871 0.83989 0.82038 0.82694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.46 10.99 127.77 1.40 1.87 16 2 N -0.47 -8.52 3.14 -538.61 -1.69 -10.22 16 3 C 0.14 2.98 10.76 83.70 0.90 3.88 16 4 C -0.27 -8.81 6.27 -19.02 -0.12 -8.93 16 5 C 0.58 23.20 7.80 86.52 0.67 23.88 16 6 O -0.60 -29.01 16.16 -4.27 -0.07 -29.08 16 7 N -0.71 -27.09 5.54 -466.86 -2.59 -29.68 16 8 C 0.14 6.53 5.61 86.38 0.48 7.01 16 9 C 0.03 1.29 5.09 29.85 0.15 1.44 16 10 C -0.55 -31.23 9.11 25.60 0.23 -30.99 16 11 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 12 C 0.01 0.49 5.46 84.66 0.46 0.95 16 13 N -0.93 -54.22 13.29 21.45 0.28 -53.94 16 14 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 18 C -0.10 -3.03 6.27 -20.08 -0.13 -3.16 16 19 C -0.10 -3.16 9.85 22.40 0.22 -2.94 16 20 C -0.14 -3.13 10.03 22.28 0.22 -2.91 16 21 C -0.10 -1.74 10.01 22.28 0.22 -1.52 16 22 C -0.12 -2.03 9.91 22.37 0.22 -1.81 16 23 C 0.07 1.67 6.79 38.92 0.26 1.93 16 24 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.11 0.40 8.13 -2.39 -0.02 0.38 16 26 H 0.10 0.42 8.03 -2.38 -0.02 0.40 16 27 H 0.21 3.01 7.38 -2.91 -0.02 2.99 16 28 H 0.41 12.62 7.35 -92.71 -0.68 11.94 16 29 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.04 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 34 H 0.10 3.69 7.45 -2.91 -0.02 3.67 16 35 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.16 1.47 8.02 -2.91 -0.02 1.45 16 Total: -1.00 -78.41 322.17 3.58 -74.84 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.40 Total: 13.26 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 5.22 Total: -11.30 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -4.00 Total: -93.84 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.07 Total: -29.08 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -78.41 3.58 -74.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273082842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.533 kcal (2) G-P(sol) polarization free energy of solvation -78.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds