Wall clock time and date at job start Mon Mar 30 2020 01:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.46938 * 2 1 4 4 H 1.09003 * 109.47698 * 305.00253 * 3 2 1 5 5 C 1.52996 * 109.47301 * 185.00148 * 3 2 1 6 6 C 1.47197 * 109.47545 * 175.00326 * 5 3 2 7 7 N 4.86390 * 126.40173 * 355.02599 * 2 1 3 8 8 N 1.46504 * 109.47194 * 64.99794 * 3 2 1 9 9 C 1.34773 * 120.00285 * 275.00070 * 8 3 2 10 10 O 1.21580 * 119.99836 * 359.97438 * 9 8 3 11 11 C 1.47646 * 119.99696 * 179.97438 * 9 8 3 12 12 C 1.40009 * 119.89711 * 359.72017 * 11 9 8 13 13 C 1.36318 * 120.10603 * 179.75846 * 12 11 9 14 14 C 1.40893 * 119.88777 * 0.51900 * 13 12 11 15 15 C 1.41117 * 120.09858 * 179.71614 * 14 13 12 16 16 H 1.08000 * 119.99079 * 204.65171 * 15 14 13 17 17 C 1.40222 * 120.00316 * 24.65139 * 15 14 13 18 18 N 1.30645 * 119.99685 * 17.86805 * 17 15 14 19 19 Si 1.86799 * 120.00273 * 197.86382 * 17 15 14 20 20 H 1.48504 * 109.46756 * 90.00181 * 19 17 15 21 21 H 1.48500 * 109.47194 * 210.00232 * 19 17 15 22 22 H 1.48500 * 109.47075 * 330.00236 * 19 17 15 23 23 C 1.40881 * 119.79720 * 359.73948 * 14 13 12 24 24 C 1.36323 * 119.89046 * 359.97438 * 23 14 13 25 25 H 1.09001 * 109.46890 * 59.99865 * 1 2 3 26 26 H 1.08992 * 109.46951 * 300.00096 * 1 2 3 27 27 H 1.09001 * 109.46971 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46890 * 120.00135 * 2 1 3 29 29 H 1.09003 * 109.46763 * 240.00310 * 2 1 3 30 30 H 1.09001 * 109.47008 * 295.00246 * 5 3 2 31 31 H 1.09000 * 109.47305 * 54.99907 * 5 3 2 32 32 H 0.97011 * 119.99334 * 95.00113 * 8 3 2 33 33 H 1.07991 * 119.94719 * 0.02987 * 12 11 9 34 34 H 1.07996 * 120.05644 * 180.23630 * 13 12 11 35 35 H 0.97002 * 120.00066 * 180.02562 * 18 17 15 36 36 H 1.07997 * 120.05908 * 179.97438 * 23 14 13 37 37 H 1.08001 * 119.94761 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 6 4.0455 2.8304 -0.2463 7 7 4.4165 3.9001 -0.3394 8 7 1.6524 2.0975 1.2518 9 6 0.4351 2.6643 1.3670 10 8 -0.3412 2.6325 0.4318 11 6 0.0444 3.3239 2.6288 12 6 0.9379 3.3541 3.7063 13 6 0.5834 3.9662 4.8716 14 6 -0.6886 4.5595 4.9943 15 6 -1.0624 5.1891 6.2006 16 1 -2.1068 5.2863 6.4578 17 6 -0.0779 5.6885 7.0653 18 7 1.1349 5.8939 6.6251 19 14 -0.5005 6.0603 8.8465 20 1 -0.2618 4.8509 9.6746 21 1 0.3536 7.1721 9.3362 22 1 -1.9291 6.4534 8.9446 23 6 -1.5863 4.5219 3.9092 24 6 -1.2206 3.9125 2.7458 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 4.0029 0.9836 0.7596 31 1 3.8571 0.8801 -1.0113 32 1 2.2720 2.1231 1.9978 33 1 1.9111 2.8955 3.6126 34 1 1.2747 3.9923 5.7009 35 1 1.8161 6.2390 7.2233 36 1 -2.5625 4.9749 3.9988 37 1 -1.9082 3.8827 1.9135 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273849386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:42 Heat of formation + Delta-G solvation = -9.907301 kcal Electronic energy + Delta-G solvation = -19990.217936 eV Core-core repulsion = 16924.511601 eV Total energy + Delta-G solvation = -3065.706335 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.59673 -37.56980 -36.72906 -35.38454 -33.88737 -32.17166 -30.64676 -29.82443 -29.43923 -26.02905 -24.44489 -22.28689 -21.10576 -20.59528 -19.74465 -17.72557 -17.52992 -16.67444 -16.31661 -15.44972 -14.97639 -14.31080 -14.14869 -14.02184 -13.88372 -13.21596 -13.04690 -12.97041 -12.72751 -12.56433 -12.13077 -12.06727 -11.91459 -11.63820 -11.42769 -11.29873 -11.22159 -10.99812 -10.95800 -10.72379 -10.62048 -10.04319 -9.57250 -9.36860 -8.96585 -8.62968 -7.73496 -7.55701 -7.04577 -4.61630 2.21668 2.74275 2.78137 2.91020 2.94859 2.97503 3.02530 3.66955 3.73091 3.83014 3.91370 4.54017 4.64935 4.97929 5.10058 5.24336 5.31818 5.51860 5.56302 5.73874 5.93736 6.01888 6.07407 6.10227 6.30368 6.33089 6.67677 6.75734 6.81627 6.89383 7.03610 7.12115 7.42050 7.56019 7.63420 7.77165 7.84799 8.05941 8.18625 8.38735 8.61996 8.74057 9.05043 9.87422 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023904 B = 0.004311 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.067581 B = 6493.128032 C = 7147.572300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.150 3.850 4 H 0.093 0.907 5 C -0.034 4.034 6 C 0.202 3.798 7 N -0.428 5.428 8 N -0.740 5.740 9 C 0.575 3.425 10 O -0.567 6.567 11 C -0.286 4.286 12 C -0.062 4.062 13 C -0.178 4.178 14 C 0.129 3.871 15 C -0.443 4.443 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.771 5.771 19 Si 0.914 3.086 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.239 4.239 24 C -0.021 4.021 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.397 0.603 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.287 0.713 36 H 0.098 0.902 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.681 -10.516 -5.373 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C 0.043 3.957 4 H 0.111 0.889 5 C -0.074 4.074 6 C -0.117 4.117 7 N -0.105 5.105 8 N -0.394 5.394 9 C 0.371 3.629 10 O -0.449 6.449 11 C -0.290 4.290 12 C -0.081 4.081 13 C -0.198 4.198 14 C 0.125 3.875 15 C -0.470 4.470 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.394 5.394 19 Si 0.737 3.263 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.259 4.259 24 C -0.041 4.041 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.232 0.768 33 H 0.105 0.895 34 H 0.137 0.863 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.938 -8.820 -6.118 11.815 hybrid contribution 0.199 -0.116 1.250 1.271 sum 5.137 -8.936 -4.869 11.399 Atomic orbital electron populations 1.21794 0.94390 1.00244 1.03883 1.21929 0.97786 0.95046 1.02031 1.20860 0.90586 0.94505 0.89724 0.88929 1.19668 0.96206 0.85469 1.06105 1.29045 0.93684 0.95199 0.93729 1.81245 1.08974 1.11903 1.08370 1.46009 1.18047 1.59874 1.15458 1.18485 0.80074 0.76309 0.88064 1.90643 1.51700 1.61315 1.41202 1.18896 0.98485 1.17112 0.94528 1.20457 0.96091 0.97886 0.93716 1.20975 0.98841 1.02307 0.97640 1.17790 0.91183 0.87109 0.91380 1.19867 0.94702 1.30599 1.01879 0.89688 1.26102 0.94299 0.93087 1.01211 1.69748 1.03363 1.29116 1.37222 0.86205 0.80093 0.78962 0.81002 1.18905 1.20015 1.18256 1.20715 1.01130 1.09884 0.94149 1.20358 0.93917 0.93455 0.96340 0.92270 0.91558 0.93910 0.91553 0.91272 0.86948 0.86091 0.76784 0.89459 0.86255 0.90211 0.88429 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.51 37.16 0.32 -1.59 16 2 C -0.13 -1.24 5.61 -26.73 -0.15 -1.39 16 3 C 0.15 1.67 2.23 -67.93 -0.15 1.52 16 4 H 0.09 1.23 7.57 -51.93 -0.39 0.84 16 5 C -0.03 -0.25 5.25 -29.52 -0.16 -0.41 16 6 C 0.20 2.48 15.14 -20.76 -0.31 2.17 16 7 N -0.43 -6.91 18.54 42.15 0.78 -6.13 16 8 N -0.74 -10.95 4.68 -54.82 -0.26 -11.20 16 9 C 0.58 11.34 6.33 -12.42 -0.08 11.26 16 10 O -0.57 -12.25 13.46 5.29 0.07 -12.18 16 11 C -0.29 -6.34 5.89 -104.73 -0.62 -6.96 16 12 C -0.06 -1.36 9.47 -39.61 -0.38 -1.73 16 13 C -0.18 -4.34 8.64 -39.27 -0.34 -4.68 16 14 C 0.13 3.27 5.58 -106.80 -0.60 2.67 16 15 C -0.44 -11.01 9.04 -37.75 -0.34 -11.35 16 16 H 0.09 2.02 7.91 -52.49 -0.42 1.60 16 17 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 18 N -0.77 -18.60 10.95 55.56 0.61 -18.00 16 19 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 16 20 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 21 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 23 C -0.24 -5.77 9.73 -39.27 -0.38 -6.15 16 24 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16 25 H 0.06 0.84 7.84 -51.93 -0.41 0.43 16 26 H 0.07 1.09 5.64 -51.93 -0.29 0.80 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.40 5.33 6.60 -40.82 -0.27 5.06 16 33 H 0.09 1.60 6.37 -52.49 -0.33 1.27 16 34 H 0.12 2.95 6.16 -52.49 -0.32 2.63 16 35 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 36 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 37 H 0.10 2.26 7.63 -52.49 -0.40 1.86 16 LS Contribution 317.42 15.07 4.78 4.78 Total: -1.00 -30.19 317.42 -7.20 -37.39 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -4.51 Total: 8.98 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -3.65 Total: -15.89 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 1.13 Total: -35.33 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.07 Total: -12.18 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.19 -7.20 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273849386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.486 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds