Wall clock time and date at job start Mon Mar 30 2020 01:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.46938 * 2 1 4 4 H 1.09003 * 109.47698 * 305.00253 * 3 2 1 5 5 C 1.52996 * 109.47301 * 185.00148 * 3 2 1 6 6 C 1.47197 * 109.47545 * 175.00326 * 5 3 2 7 7 N 4.86390 * 126.40173 * 355.02599 * 2 1 3 8 8 N 1.46504 * 109.47194 * 64.99794 * 3 2 1 9 9 C 1.34773 * 120.00285 * 275.00070 * 8 3 2 10 10 O 1.21580 * 119.99836 * 359.97438 * 9 8 3 11 11 C 1.47646 * 119.99696 * 179.97438 * 9 8 3 12 12 C 1.40009 * 119.89711 * 359.72017 * 11 9 8 13 13 C 1.36318 * 120.10603 * 179.75846 * 12 11 9 14 14 C 1.40893 * 119.88777 * 0.51900 * 13 12 11 15 15 C 1.41117 * 120.09858 * 179.71614 * 14 13 12 16 16 H 1.08000 * 119.99079 * 204.65171 * 15 14 13 17 17 C 1.40222 * 120.00316 * 24.65139 * 15 14 13 18 18 N 1.30645 * 119.99685 * 17.86805 * 17 15 14 19 19 Si 1.86799 * 120.00273 * 197.86382 * 17 15 14 20 20 H 1.48504 * 109.46756 * 90.00181 * 19 17 15 21 21 H 1.48500 * 109.47194 * 210.00232 * 19 17 15 22 22 H 1.48500 * 109.47075 * 330.00236 * 19 17 15 23 23 C 1.40881 * 119.79720 * 359.73948 * 14 13 12 24 24 C 1.36323 * 119.89046 * 359.97438 * 23 14 13 25 25 H 1.09001 * 109.46890 * 59.99865 * 1 2 3 26 26 H 1.08992 * 109.46951 * 300.00096 * 1 2 3 27 27 H 1.09001 * 109.46971 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46890 * 120.00135 * 2 1 3 29 29 H 1.09003 * 109.46763 * 240.00310 * 2 1 3 30 30 H 1.09001 * 109.47008 * 295.00246 * 5 3 2 31 31 H 1.09000 * 109.47305 * 54.99907 * 5 3 2 32 32 H 0.97011 * 119.99334 * 95.00113 * 8 3 2 33 33 H 1.07991 * 119.94719 * 0.02987 * 12 11 9 34 34 H 1.07996 * 120.05644 * 180.23630 * 13 12 11 35 35 H 0.97002 * 120.00066 * 180.02562 * 18 17 15 36 36 H 1.07997 * 120.05908 * 179.97438 * 23 14 13 37 37 H 1.08001 * 119.94761 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 6 4.0455 2.8304 -0.2463 7 7 4.4165 3.9001 -0.3394 8 7 1.6524 2.0975 1.2518 9 6 0.4351 2.6643 1.3670 10 8 -0.3412 2.6325 0.4318 11 6 0.0444 3.3239 2.6288 12 6 0.9379 3.3541 3.7063 13 6 0.5834 3.9662 4.8716 14 6 -0.6886 4.5595 4.9943 15 6 -1.0624 5.1891 6.2006 16 1 -2.1068 5.2863 6.4578 17 6 -0.0779 5.6885 7.0653 18 7 1.1349 5.8939 6.6251 19 14 -0.5005 6.0603 8.8465 20 1 -0.2618 4.8509 9.6746 21 1 0.3536 7.1721 9.3362 22 1 -1.9291 6.4534 8.9446 23 6 -1.5863 4.5219 3.9092 24 6 -1.2206 3.9125 2.7458 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 4.0029 0.9836 0.7596 31 1 3.8571 0.8801 -1.0113 32 1 2.2720 2.1231 1.9978 33 1 1.9111 2.8955 3.6126 34 1 1.2747 3.9923 5.7009 35 1 1.8161 6.2390 7.2233 36 1 -2.5625 4.9749 3.9988 37 1 -1.9082 3.8827 1.9135 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273849386.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:41 Heat of formation + Delta-G solvation = -28.096304 kcal Electronic energy + Delta-G solvation = -19991.006670 eV Core-core repulsion = 16924.511601 eV Total energy + Delta-G solvation = -3066.495070 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.01231 -39.15926 -37.98856 -36.55664 -35.66337 -33.47648 -31.81758 -31.35190 -31.14024 -27.74325 -25.48866 -23.84792 -22.82722 -21.81464 -21.22133 -19.36706 -18.78553 -18.00260 -17.53263 -17.04659 -16.25015 -15.75923 -15.57617 -15.27439 -15.03037 -14.85570 -14.50409 -14.22332 -13.99456 -13.82481 -13.66099 -13.58394 -13.20243 -13.00298 -12.86099 -12.61892 -12.40489 -12.38262 -12.25097 -11.87385 -11.76501 -11.58876 -11.36055 -11.12662 -10.56995 -9.90997 -9.56977 -9.39678 -8.79727 -6.48861 0.47173 1.14514 1.37889 1.42839 1.52294 1.80182 1.87375 2.14919 2.19621 2.46402 2.80818 3.10525 3.69653 3.83154 4.23973 4.25595 4.31543 4.35671 4.44851 4.58807 4.70593 4.79475 4.91333 5.00021 5.02996 5.11410 5.16294 5.20179 5.29916 5.38221 5.58170 5.63962 5.74498 5.83807 5.94993 5.99241 6.23278 6.53993 6.65766 6.76496 6.78138 6.89556 7.54810 8.15574 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023904 B = 0.004311 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.067581 B = 6493.128032 C = 7147.572300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.144 3.856 4 H 0.069 0.931 5 C -0.024 4.024 6 C 0.227 3.773 7 N -0.507 5.507 8 N -0.725 5.725 9 C 0.576 3.424 10 O -0.590 6.590 11 C -0.293 4.293 12 C -0.054 4.054 13 C -0.199 4.199 14 C 0.100 3.900 15 C -0.478 4.478 16 H 0.084 0.916 17 C 0.038 3.962 18 N -0.802 5.802 19 Si 0.988 3.012 20 H -0.257 1.257 21 H -0.266 1.266 22 H -0.258 1.258 23 C -0.255 4.255 24 C -0.035 4.035 25 H 0.038 0.962 26 H 0.026 0.974 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.151 0.849 31 H 0.172 0.828 32 H 0.406 0.594 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.296 0.704 36 H 0.101 0.899 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.546 -12.787 -5.406 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C 0.039 3.961 4 H 0.087 0.913 5 C -0.064 4.064 6 C -0.090 4.090 7 N -0.185 5.185 8 N -0.378 5.378 9 C 0.369 3.631 10 O -0.474 6.474 11 C -0.297 4.297 12 C -0.073 4.073 13 C -0.219 4.219 14 C 0.097 3.903 15 C -0.505 4.505 16 H 0.102 0.898 17 C -0.180 4.180 18 N -0.426 5.426 19 Si 0.808 3.192 20 H -0.181 1.181 21 H -0.190 1.190 22 H -0.181 1.181 23 C -0.275 4.275 24 C -0.054 4.054 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.169 0.831 31 H 0.189 0.811 32 H 0.242 0.758 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.839 -11.116 -6.173 14.437 hybrid contribution -0.392 0.492 1.099 1.266 sum 6.447 -10.624 -5.074 13.423 Atomic orbital electron populations 1.21765 0.97424 1.00349 1.00941 1.21911 0.94844 0.93985 1.05058 1.21133 0.93213 0.94976 0.86786 0.91310 1.20047 0.92855 0.83175 1.10278 1.29988 0.91826 0.95757 0.91383 1.81280 1.11498 1.14438 1.11253 1.45921 1.16196 1.58460 1.17257 1.18149 0.81571 0.76641 0.86756 1.90634 1.52896 1.62270 1.41596 1.19313 0.98046 1.16309 0.96027 1.20738 0.97383 0.96736 0.92479 1.21020 0.98687 1.03617 0.98532 1.18135 0.92083 0.87978 0.92080 1.20108 0.95284 1.32177 1.02918 0.89818 1.26921 0.93801 0.92196 1.05104 1.69773 1.04339 1.29502 1.38948 0.85108 0.79784 0.79084 0.75272 1.18096 1.19041 1.18147 1.20852 1.01471 1.10650 0.94494 1.20519 0.94890 0.93886 0.96125 0.94246 0.95485 0.92274 0.89534 0.87099 0.83109 0.81060 0.75757 0.85784 0.86983 0.89276 0.88103 0.87998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.51 71.98 0.61 -2.99 16 2 C -0.12 -1.76 5.61 30.59 0.17 -1.59 16 3 C 0.14 2.71 2.23 44.99 0.10 2.81 16 4 H 0.07 1.69 7.57 -2.39 -0.02 1.67 16 5 C -0.02 -0.23 5.25 28.79 0.15 -0.08 16 6 C 0.23 4.97 15.14 89.44 1.35 6.33 16 7 N -0.51 -15.94 18.54 20.01 0.37 -15.57 16 8 N -0.73 -19.80 4.68 -445.60 -2.08 -21.89 16 9 C 0.58 22.46 6.33 86.73 0.55 23.01 16 10 O -0.59 -25.81 13.46 -3.97 -0.05 -25.86 16 11 C -0.29 -13.11 5.89 -19.93 -0.12 -13.22 16 12 C -0.05 -2.36 9.47 22.25 0.21 -2.15 16 13 C -0.20 -9.91 8.64 22.47 0.19 -9.71 16 14 C 0.10 5.29 5.58 -21.28 -0.12 5.17 16 15 C -0.48 -24.54 9.04 23.46 0.21 -24.33 16 16 H 0.08 4.14 7.91 -2.91 -0.02 4.12 16 17 C 0.04 1.81 5.14 85.35 0.44 2.25 16 18 N -0.80 -39.17 10.95 21.87 0.24 -38.93 16 19 Si 0.99 35.32 29.60 68.60 2.03 37.35 16 20 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 21 H -0.27 -9.04 7.11 99.48 0.71 -8.33 16 22 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 23 C -0.26 -12.87 9.73 22.47 0.22 -12.65 16 24 C -0.03 -1.69 9.52 22.25 0.21 -1.48 16 25 H 0.04 1.09 7.84 -2.39 -0.02 1.07 16 26 H 0.03 0.86 5.64 -2.39 -0.01 0.85 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.17 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.41 9.60 6.60 -92.70 -0.61 8.99 16 33 H 0.12 4.31 6.37 -2.91 -0.02 4.29 16 34 H 0.11 5.66 6.16 -2.91 -0.02 5.65 16 35 H 0.30 12.88 8.29 -92.71 -0.77 12.11 16 36 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 37 H 0.10 4.77 7.63 -2.91 -0.02 4.75 16 Total: -1.00 -71.64 317.42 5.18 -66.46 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.49 Total: 27.05 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 4.19 Total: -28.62 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -1.47 Total: -76.38 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.05 Total: -25.86 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 2.03 Total: 37.35 kcal Total: -71.64 5.18 -66.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273849386.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.368 kcal (2) G-P(sol) polarization free energy of solvation -71.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds