Wall clock time and date at job start Mon Mar 30 2020 01:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47115 * 2 1 4 4 H 1.08998 * 109.47344 * 54.99717 * 3 2 1 5 5 C 1.53001 * 109.47414 * 175.00074 * 3 2 1 6 6 C 1.47194 * 109.47252 * 184.99797 * 5 3 2 7 7 N 4.86398 * 126.40187 * 4.97405 * 2 1 3 8 8 N 1.46503 * 109.46916 * 294.99612 * 3 2 1 9 9 C 1.34782 * 119.99901 * 85.00041 * 8 3 2 10 10 O 1.21587 * 119.99860 * 0.02562 * 9 8 3 11 11 C 1.47642 * 119.99863 * 179.97438 * 9 8 3 12 12 C 1.40008 * 119.89645 * 359.72673 * 11 9 8 13 13 C 1.36322 * 120.10364 * 179.71415 * 12 11 9 14 14 C 1.40889 * 119.89233 * 0.58159 * 13 12 11 15 15 C 1.41100 * 120.10353 * 179.67559 * 14 13 12 16 16 H 1.08005 * 120.00189 * 204.65164 * 15 14 13 17 17 C 1.40224 * 120.00388 * 24.65027 * 15 14 13 18 18 N 1.30649 * 119.99811 * 17.85959 * 17 15 14 19 19 Si 1.86797 * 120.00336 * 197.86957 * 17 15 14 20 20 H 1.48504 * 109.47546 * 89.99700 * 19 17 15 21 21 H 1.48501 * 109.47308 * 209.99794 * 19 17 15 22 22 H 1.48497 * 109.47214 * 329.99688 * 19 17 15 23 23 C 1.40889 * 119.78986 * 359.69087 * 14 13 12 24 24 C 1.36311 * 119.89454 * 0.02562 * 23 14 13 25 25 H 1.08996 * 109.47555 * 300.00004 * 1 2 3 26 26 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47174 * 60.00602 * 1 2 3 28 28 H 1.09000 * 109.47174 * 119.99398 * 2 1 3 29 29 H 1.08996 * 109.47555 * 239.99996 * 2 1 3 30 30 H 1.09002 * 109.46883 * 305.00007 * 5 3 2 31 31 H 1.09002 * 109.47074 * 64.99736 * 5 3 2 32 32 H 0.97000 * 120.00133 * 264.99647 * 8 3 2 33 33 H 1.07997 * 119.94912 * 0.02562 * 12 11 9 34 34 H 1.08001 * 120.05081 * 180.25249 * 13 12 11 35 35 H 0.97008 * 119.99763 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.04789 * 179.97438 * 23 14 13 37 37 H 1.07998 * 119.94676 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1257 6 6 4.0454 2.8304 0.2463 7 7 4.4164 3.9001 0.3394 8 7 1.6524 2.0974 -1.2519 9 6 0.4350 2.6643 -1.3671 10 8 -0.3413 2.6326 -0.4319 11 6 0.0447 3.3248 -2.6285 12 6 0.9430 3.3660 -3.7017 13 6 0.5849 3.9697 -4.8703 14 6 -0.6869 4.5634 -4.9930 15 6 -1.0597 5.1954 -6.1982 16 1 -1.8144 5.9680 -6.1919 17 6 -0.4502 4.8205 -7.4042 18 7 0.1866 3.6829 -7.4882 19 14 -0.5486 5.9478 -8.8904 20 1 0.6082 6.8789 -8.8830 21 1 -0.5208 5.1336 -10.1320 22 1 -1.8116 6.7272 -8.8378 23 6 -1.5852 4.5243 -3.9083 24 6 -1.2203 3.9134 -2.7457 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.8570 0.8801 1.0113 31 1 4.0029 0.9836 -0.7597 32 1 2.2719 2.1231 -1.9978 33 1 1.9193 2.9145 -3.6052 34 1 1.2769 3.9974 -5.6990 35 1 0.6079 3.4234 -8.3226 36 1 -2.5610 4.9785 -3.9976 37 1 -1.9080 3.8833 -1.9135 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273849387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:45 Heat of formation + Delta-G solvation = -10.002221 kcal Electronic energy + Delta-G solvation = -19987.857065 eV Core-core repulsion = 16922.146614 eV Total energy + Delta-G solvation = -3065.710451 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.59650 -37.57418 -36.74016 -35.39117 -33.88900 -32.16874 -30.64703 -29.82697 -29.44048 -26.03093 -24.44152 -22.28597 -21.10553 -20.59425 -19.74588 -17.73340 -17.53274 -16.67757 -16.31625 -15.45872 -14.96324 -14.32214 -14.15310 -14.02179 -13.88800 -13.21960 -13.06087 -12.98068 -12.69681 -12.58480 -12.11273 -12.07511 -11.96330 -11.61062 -11.41006 -11.29598 -11.23268 -11.04192 -10.91767 -10.74158 -10.59717 -10.04470 -9.57312 -9.36823 -8.97034 -8.62709 -7.73613 -7.55877 -7.05199 -4.61800 2.21459 2.72029 2.75783 2.90832 2.95153 2.97360 3.02486 3.66748 3.72961 3.82496 3.90288 4.54058 4.64445 4.97502 5.10305 5.24480 5.32413 5.52447 5.56303 5.74332 5.94698 6.01832 6.08065 6.11310 6.30137 6.34377 6.69266 6.75584 6.81358 6.89371 7.03493 7.11961 7.41915 7.53669 7.63219 7.77050 7.84719 8.05738 8.18516 8.38586 8.61812 8.73912 9.04934 9.86821 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.004235 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.803197 B = 6609.697085 C = 7067.076955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.150 3.850 4 H 0.093 0.907 5 C -0.035 4.035 6 C 0.203 3.797 7 N -0.430 5.430 8 N -0.740 5.740 9 C 0.575 3.425 10 O -0.567 6.567 11 C -0.286 4.286 12 C -0.062 4.062 13 C -0.178 4.178 14 C 0.129 3.871 15 C -0.443 4.443 16 H 0.085 0.915 17 C 0.075 3.925 18 N -0.772 5.772 19 Si 0.914 3.086 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.239 4.239 24 C -0.021 4.021 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.121 0.879 31 H 0.113 0.887 32 H 0.397 0.603 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.286 0.714 36 H 0.098 0.902 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.851 -7.786 6.452 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C 0.043 3.957 4 H 0.111 0.889 5 C -0.075 4.075 6 C -0.115 4.115 7 N -0.107 5.107 8 N -0.394 5.394 9 C 0.371 3.629 10 O -0.449 6.449 11 C -0.290 4.290 12 C -0.081 4.081 13 C -0.198 4.198 14 C 0.125 3.875 15 C -0.470 4.470 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.395 5.395 19 Si 0.737 3.263 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.259 4.259 24 C -0.041 4.041 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.232 0.768 33 H 0.105 0.895 34 H 0.137 0.863 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.991 -6.364 7.090 11.254 hybrid contribution 0.223 -0.061 -1.228 1.250 sum 6.214 -6.424 5.862 10.688 Atomic orbital electron populations 1.21791 0.94376 1.00284 1.03870 1.21928 0.97806 0.95033 1.02047 1.20861 0.90548 0.94541 0.89702 0.88931 1.19677 0.96235 0.85449 1.06138 1.29052 0.93610 0.95198 0.93649 1.81236 1.09038 1.11941 1.08455 1.46008 1.18053 1.59874 1.15458 1.18488 0.80063 0.76307 0.88075 1.90645 1.51635 1.61354 1.41222 1.18895 0.98784 1.16897 0.94429 1.20459 0.96269 0.97951 0.93469 1.20974 0.97297 1.04701 0.96782 1.17786 0.90287 0.87483 0.91900 1.19866 1.18557 1.17441 0.91173 0.89699 1.26095 0.92765 0.94616 1.01176 1.69746 1.23688 1.17744 1.28307 0.86209 0.80306 0.80579 0.79196 1.18929 1.19989 1.18258 1.20718 0.99554 1.10078 0.95524 1.20354 0.93932 0.93664 0.96122 0.92278 0.93890 0.91549 0.91278 0.91524 0.86072 0.86914 0.76783 0.89459 0.86253 0.90235 0.88427 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.51 37.15 0.32 -1.63 16 2 C -0.13 -1.27 5.61 -26.74 -0.15 -1.42 16 3 C 0.15 1.67 2.23 -67.93 -0.15 1.52 16 4 H 0.09 1.23 7.57 -51.93 -0.39 0.83 16 5 C -0.03 -0.25 5.25 -29.52 -0.16 -0.41 16 6 C 0.20 2.44 15.14 -20.76 -0.31 2.12 16 7 N -0.43 -6.75 18.54 42.16 0.78 -5.97 16 8 N -0.74 -10.94 4.68 -54.81 -0.26 -11.20 16 9 C 0.58 11.33 6.33 -12.42 -0.08 11.25 16 10 O -0.57 -12.25 13.46 5.29 0.07 -12.18 16 11 C -0.29 -6.34 5.89 -104.73 -0.62 -6.96 16 12 C -0.06 -1.36 9.47 -39.61 -0.38 -1.73 16 13 C -0.18 -4.34 8.63 -39.27 -0.34 -4.68 16 14 C 0.13 3.27 5.58 -106.81 -0.60 2.67 16 15 C -0.44 -11.01 9.04 -37.75 -0.34 -11.35 16 16 H 0.08 2.02 7.91 -52.48 -0.42 1.61 16 17 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 18 N -0.77 -18.36 10.95 55.56 0.61 -17.75 16 19 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 16 20 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 21 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 22 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 23 C -0.24 -5.77 9.73 -39.27 -0.38 -6.15 16 24 C -0.02 -0.50 9.52 -39.61 -0.38 -0.88 16 25 H 0.06 0.85 7.84 -51.93 -0.41 0.44 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 1.12 5.65 -51.93 -0.29 0.83 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.40 5.33 6.60 -40.82 -0.27 5.06 16 33 H 0.09 1.60 6.37 -52.49 -0.33 1.27 16 34 H 0.12 2.95 6.16 -52.49 -0.32 2.63 16 35 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 36 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 37 H 0.10 2.26 7.63 -52.49 -0.40 1.86 16 LS Contribution 317.42 15.07 4.78 4.78 Total: -1.00 -29.94 317.42 -7.20 -37.14 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.51 Total: 8.92 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -3.65 Total: -15.99 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 1.13 Total: -34.91 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.07 Total: -12.18 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.94 -7.20 -37.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273849387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.135 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds