Wall clock time and date at job start Mon Mar 30 2020 01:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47115 * 2 1 4 4 H 1.08998 * 109.47344 * 54.99717 * 3 2 1 5 5 C 1.53001 * 109.47414 * 175.00074 * 3 2 1 6 6 C 1.47194 * 109.47252 * 184.99797 * 5 3 2 7 7 N 4.86398 * 126.40187 * 4.97405 * 2 1 3 8 8 N 1.46503 * 109.46916 * 294.99612 * 3 2 1 9 9 C 1.34782 * 119.99901 * 85.00041 * 8 3 2 10 10 O 1.21587 * 119.99860 * 0.02562 * 9 8 3 11 11 C 1.47642 * 119.99863 * 179.97438 * 9 8 3 12 12 C 1.40008 * 119.89645 * 359.72673 * 11 9 8 13 13 C 1.36322 * 120.10364 * 179.71415 * 12 11 9 14 14 C 1.40889 * 119.89233 * 0.58159 * 13 12 11 15 15 C 1.41100 * 120.10353 * 179.67559 * 14 13 12 16 16 H 1.08005 * 120.00189 * 204.65164 * 15 14 13 17 17 C 1.40224 * 120.00388 * 24.65027 * 15 14 13 18 18 N 1.30649 * 119.99811 * 17.85959 * 17 15 14 19 19 Si 1.86797 * 120.00336 * 197.86957 * 17 15 14 20 20 H 1.48504 * 109.47546 * 89.99700 * 19 17 15 21 21 H 1.48501 * 109.47308 * 209.99794 * 19 17 15 22 22 H 1.48497 * 109.47214 * 329.99688 * 19 17 15 23 23 C 1.40889 * 119.78986 * 359.69087 * 14 13 12 24 24 C 1.36311 * 119.89454 * 0.02562 * 23 14 13 25 25 H 1.08996 * 109.47555 * 300.00004 * 1 2 3 26 26 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47174 * 60.00602 * 1 2 3 28 28 H 1.09000 * 109.47174 * 119.99398 * 2 1 3 29 29 H 1.08996 * 109.47555 * 239.99996 * 2 1 3 30 30 H 1.09002 * 109.46883 * 305.00007 * 5 3 2 31 31 H 1.09002 * 109.47074 * 64.99736 * 5 3 2 32 32 H 0.97000 * 120.00133 * 264.99647 * 8 3 2 33 33 H 1.07997 * 119.94912 * 0.02562 * 12 11 9 34 34 H 1.08001 * 120.05081 * 180.25249 * 13 12 11 35 35 H 0.97008 * 119.99763 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.04789 * 179.97438 * 23 14 13 37 37 H 1.07998 * 119.94676 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5647 1.4444 0.1257 6 6 4.0454 2.8304 0.2463 7 7 4.4164 3.9001 0.3394 8 7 1.6524 2.0974 -1.2519 9 6 0.4350 2.6643 -1.3671 10 8 -0.3413 2.6326 -0.4319 11 6 0.0447 3.3248 -2.6285 12 6 0.9430 3.3660 -3.7017 13 6 0.5849 3.9697 -4.8703 14 6 -0.6869 4.5634 -4.9930 15 6 -1.0597 5.1954 -6.1982 16 1 -1.8144 5.9680 -6.1919 17 6 -0.4502 4.8205 -7.4042 18 7 0.1866 3.6829 -7.4882 19 14 -0.5486 5.9478 -8.8904 20 1 0.6082 6.8789 -8.8830 21 1 -0.5208 5.1336 -10.1320 22 1 -1.8116 6.7272 -8.8378 23 6 -1.5852 4.5243 -3.9083 24 6 -1.2203 3.9134 -2.7457 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.8570 0.8801 1.0113 31 1 4.0029 0.9836 -0.7597 32 1 2.2719 2.1231 -1.9978 33 1 1.9193 2.9145 -3.6052 34 1 1.2769 3.9974 -5.6990 35 1 0.6079 3.4234 -8.3226 36 1 -2.5610 4.9785 -3.9976 37 1 -1.9080 3.8833 -1.9135 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273849387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:44 Heat of formation + Delta-G solvation = -27.895162 kcal Electronic energy + Delta-G solvation = -19988.632961 eV Core-core repulsion = 16922.146614 eV Total energy + Delta-G solvation = -3066.486348 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01050 -39.15887 -37.98445 -36.55356 -35.65933 -33.47787 -31.81870 -31.35059 -31.13933 -27.74114 -25.48985 -23.84765 -22.82684 -21.81686 -21.22115 -19.36647 -18.78174 -17.99873 -17.52937 -17.05336 -16.23582 -15.76076 -15.58642 -15.27184 -15.02955 -14.85256 -14.51988 -14.19912 -13.99287 -13.77135 -13.76089 -13.54908 -13.21390 -12.95484 -12.87306 -12.64596 -12.44918 -12.32986 -12.26386 -11.87522 -11.75623 -11.60025 -11.35904 -11.12279 -10.57224 -9.90787 -9.56944 -9.39552 -8.79597 -6.48488 0.47269 1.14637 1.37808 1.42895 1.51755 1.80273 1.87478 2.14708 2.19961 2.46492 2.80933 3.10540 3.69813 3.83246 4.23799 4.25260 4.31542 4.35614 4.44727 4.58356 4.70110 4.79618 4.91321 5.00061 5.03304 5.10613 5.16240 5.19533 5.30076 5.37925 5.58192 5.63138 5.74483 5.83847 5.95017 5.99333 6.23325 6.54104 6.65739 6.76613 6.78142 6.89627 7.54888 8.15851 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.004235 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.803197 B = 6609.697085 C = 7067.076955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.145 3.855 4 H 0.070 0.930 5 C -0.024 4.024 6 C 0.228 3.772 7 N -0.506 5.506 8 N -0.726 5.726 9 C 0.576 3.424 10 O -0.591 6.591 11 C -0.293 4.293 12 C -0.054 4.054 13 C -0.199 4.199 14 C 0.100 3.900 15 C -0.478 4.478 16 H 0.082 0.918 17 C 0.040 3.960 18 N -0.798 5.798 19 Si 0.986 3.014 20 H -0.260 1.260 21 H -0.263 1.263 22 H -0.259 1.259 23 C -0.256 4.256 24 C -0.035 4.035 25 H 0.040 0.960 26 H 0.057 0.943 27 H 0.025 0.975 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.172 0.828 31 H 0.151 0.849 32 H 0.406 0.594 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.297 0.703 36 H 0.101 0.899 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.887 -9.778 6.584 14.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C 0.039 3.961 4 H 0.088 0.912 5 C -0.064 4.064 6 C -0.089 4.089 7 N -0.183 5.183 8 N -0.378 5.378 9 C 0.369 3.631 10 O -0.474 6.474 11 C -0.297 4.297 12 C -0.073 4.073 13 C -0.219 4.219 14 C 0.097 3.903 15 C -0.505 4.505 16 H 0.100 0.900 17 C -0.179 4.179 18 N -0.422 5.422 19 Si 0.806 3.194 20 H -0.185 1.185 21 H -0.187 1.187 22 H -0.182 1.182 23 C -0.275 4.275 24 C -0.054 4.054 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.130 0.870 29 H 0.103 0.897 30 H 0.189 0.811 31 H 0.168 0.832 32 H 0.242 0.758 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.061 -8.386 7.240 13.701 hybrid contribution -0.432 0.433 -1.129 1.284 sum 7.629 -7.953 6.111 12.601 Atomic orbital electron populations 1.21762 0.97480 1.00317 1.00922 1.21913 0.94801 0.94134 1.05016 1.21129 0.93250 0.94885 0.86807 0.91190 1.20034 0.92808 0.83279 1.10248 1.29949 0.91828 0.95723 0.91389 1.81271 1.11458 1.14373 1.11235 1.45920 1.16202 1.58458 1.17258 1.18152 0.81555 0.76644 0.86762 1.90635 1.52833 1.62313 1.41620 1.19308 0.98350 1.16144 0.95922 1.20739 0.97609 0.96741 0.92233 1.21015 0.97039 1.06175 0.97647 1.18127 0.91126 0.88409 0.92604 1.20098 1.19935 1.18314 0.92198 0.89958 1.26883 0.91894 0.95743 1.03426 1.69759 1.23906 1.18820 1.29682 0.85132 0.80176 0.78451 0.75640 1.18476 1.18688 1.18237 1.20853 0.99861 1.10861 0.95930 1.20513 0.94910 0.94046 0.95931 0.94121 0.92362 0.95614 0.87048 0.89679 0.81081 0.83179 0.75761 0.85792 0.86977 0.89186 0.88129 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 8.51 71.98 0.61 -3.08 16 2 C -0.12 -1.83 5.61 30.59 0.17 -1.66 16 3 C 0.14 2.72 2.23 44.99 0.10 2.82 16 4 H 0.07 1.70 7.57 -2.39 -0.02 1.68 16 5 C -0.02 -0.23 5.25 28.79 0.15 -0.08 16 6 C 0.23 4.83 15.14 89.44 1.35 6.19 16 7 N -0.51 -15.38 18.54 20.00 0.37 -15.01 16 8 N -0.73 -19.81 4.68 -445.57 -2.08 -21.89 16 9 C 0.58 22.47 6.33 86.73 0.55 23.02 16 10 O -0.59 -25.81 13.46 -3.99 -0.05 -25.87 16 11 C -0.29 -13.12 5.89 -19.93 -0.12 -13.24 16 12 C -0.05 -2.36 9.47 22.25 0.21 -2.14 16 13 C -0.20 -9.91 8.63 22.47 0.19 -9.72 16 14 C 0.10 5.30 5.58 -21.28 -0.12 5.18 16 15 C -0.48 -24.59 9.04 23.46 0.21 -24.38 16 16 H 0.08 4.09 7.91 -2.91 -0.02 4.07 16 17 C 0.04 1.85 5.14 85.35 0.44 2.29 16 18 N -0.80 -38.26 10.95 21.87 0.24 -38.02 16 19 Si 0.99 35.28 29.60 68.60 2.03 37.31 16 20 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 21 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 22 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 23 C -0.26 -12.90 9.73 22.47 0.22 -12.68 16 24 C -0.03 -1.68 9.52 22.25 0.21 -1.47 16 25 H 0.04 1.14 7.84 -2.39 -0.02 1.12 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.02 0.84 5.65 -2.39 -0.01 0.83 16 28 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.17 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.41 9.61 6.60 -92.71 -0.61 8.99 16 33 H 0.12 4.31 6.37 -2.91 -0.02 4.29 16 34 H 0.11 5.66 6.16 -2.91 -0.02 5.64 16 35 H 0.30 12.60 8.29 -92.70 -0.77 11.83 16 36 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 37 H 0.10 4.77 7.63 -2.91 -0.02 4.75 16 Total: -1.00 -70.86 317.42 5.18 -65.68 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.49 Total: 26.76 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 4.19 Total: -28.96 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -1.47 Total: -74.92 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.05 Total: -25.87 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Total: -70.86 5.18 -65.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273849387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.786 kcal (2) G-P(sol) polarization free energy of solvation -70.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds