Wall clock time and date at job start Mon Mar 30 2020 01:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47109 * 2 1 4 4 C 1.53004 * 109.46956 * 119.99163 * 2 1 3 5 5 C 1.50703 * 109.47349 * 295.00303 * 4 2 1 6 6 O 1.21291 * 119.99612 * 359.97438 * 5 4 2 7 7 N 1.34769 * 119.99858 * 180.02562 * 5 4 2 8 8 C 1.37096 * 119.99978 * 179.97438 * 7 5 4 9 9 H 1.08001 * 120.00077 * 0.02562 * 8 7 5 10 10 C 1.38954 * 120.00110 * 180.02562 * 8 7 5 11 11 N 1.31406 * 119.99918 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99848 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47229 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47176 * 119.99903 * 12 10 8 15 15 H 1.48507 * 109.46751 * 239.99564 * 12 10 8 16 16 C 1.50694 * 109.47337 * 239.99243 * 2 1 3 17 17 C 1.34234 * 126.50481 * 300.33953 * 16 2 1 18 18 N 1.36830 * 109.93384 * 180.14765 * 17 16 2 19 19 H 0.97001 * 125.06783 * 179.82141 * 18 17 16 20 20 C 1.37689 * 109.86882 * 359.54926 * 18 17 16 21 21 C 1.39134 * 133.50571 * 180.26034 * 20 18 17 22 22 C 1.37745 * 119.77479 * 180.02562 * 21 20 18 23 23 C 1.38830 * 120.67221 * 0.02562 * 22 21 20 24 24 C 1.36628 * 120.52453 * 359.97438 * 23 22 21 25 25 C 1.39628 * 119.76381 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47193 * 60.00360 * 1 2 3 27 27 H 1.09001 * 109.47477 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47469 * 300.00269 * 1 2 3 29 29 H 1.08997 * 109.47273 * 55.00380 * 4 2 1 30 30 H 1.08999 * 109.46925 * 175.00278 * 4 2 1 31 31 H 0.97000 * 120.00721 * 359.97438 * 7 5 4 32 32 H 0.97001 * 119.99736 * 180.02562 * 11 10 8 33 33 H 1.07999 * 125.03333 * 359.97438 * 17 16 2 34 34 H 1.08000 * 120.10688 * 359.97438 * 21 20 18 35 35 H 1.08006 * 119.66035 * 180.02562 * 22 21 20 36 36 H 1.07995 * 119.73837 * 179.97438 * 23 22 21 37 37 H 1.07999 * 120.11413 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 1.6412 0.0573 2.4767 6 8 1.0115 1.0877 2.3631 7 7 1.9852 -0.3910 3.7002 8 6 1.6229 0.3174 4.8166 9 1 1.0615 1.2345 4.7157 10 6 1.9780 -0.1445 6.0781 11 7 2.6606 -1.2606 6.2010 12 14 1.4837 0.8204 7.5993 13 1 0.7263 2.0313 7.1930 14 1 0.6307 -0.0290 8.4688 15 1 2.7019 1.2262 8.3455 16 6 2.0323 -0.7105 -1.2303 17 6 1.7847 -1.9843 -1.5739 18 7 2.4104 -2.2791 -2.7545 19 1 2.3798 -3.1393 -3.2018 20 6 3.0850 -1.1711 -3.2160 21 6 3.8626 -0.9236 -4.3429 22 6 4.4187 0.3226 -4.5301 23 6 4.2121 1.3366 -3.6046 24 6 3.4520 1.1154 -2.4910 25 6 2.8778 -0.1400 -2.2818 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6054 -1.7196 1.2954 30 1 3.1262 -0.7993 1.2058 31 1 2.4891 -1.2148 3.7910 32 1 2.9082 -1.5832 7.0816 33 1 1.1831 -2.6750 -1.0017 34 1 4.0302 -1.7063 -5.0680 35 1 5.0217 0.5128 -5.4057 36 1 4.6556 2.3079 -3.7661 37 1 3.2959 1.9088 -1.7751 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278821637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:38 Heat of formation + Delta-G solvation = -15.455433 kcal Electronic energy + Delta-G solvation = -19854.470278 eV Core-core repulsion = 16788.523357 eV Total energy + Delta-G solvation = -3065.946920 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.17249 -40.21779 -37.83213 -36.44385 -35.50738 -33.24953 -32.17162 -30.23599 -29.41728 -28.71735 -26.53626 -23.84228 -23.69391 -22.59471 -21.01081 -19.97654 -19.43500 -18.75957 -17.60939 -17.17164 -16.48995 -16.26219 -16.04895 -15.77414 -15.36540 -14.95013 -14.84813 -14.62307 -14.27407 -14.02488 -13.49758 -13.45420 -13.21881 -12.93712 -12.55451 -12.53100 -12.39982 -12.29622 -12.12266 -12.00512 -11.68926 -11.51452 -11.42572 -10.46717 -10.19310 -9.96656 -9.08598 -8.49903 -8.43660 -5.92962 0.26415 0.75595 1.37339 1.42087 1.56517 1.79793 2.10072 2.31097 2.33363 3.03046 3.23200 3.29525 3.84703 3.92794 4.09372 4.24756 4.30982 4.34202 4.45003 4.54308 4.60374 4.71705 4.75867 4.81876 4.96652 4.98672 5.05896 5.18042 5.25982 5.43114 5.45841 5.58061 5.64150 5.75511 5.85417 5.92668 6.03917 6.30186 6.62731 6.80918 7.15363 7.60366 8.16144 8.73172 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033256 B = 0.003559 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.750449 B = 7866.256030 C = 8012.605640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.014 3.986 3 H 0.050 0.950 4 C -0.108 4.108 5 C 0.440 3.560 6 O -0.625 6.625 7 N -0.576 5.576 8 C -0.333 4.333 9 H 0.079 0.921 10 C -0.015 4.015 11 N -0.922 5.922 12 Si 0.992 3.008 13 H -0.273 1.273 14 H -0.270 1.270 15 H -0.272 1.272 16 C -0.184 4.184 17 C 0.066 3.934 18 N -0.583 5.583 19 H 0.431 0.569 20 C 0.080 3.920 21 C -0.132 4.132 22 C -0.106 4.106 23 C -0.153 4.153 24 C -0.098 4.098 25 C -0.131 4.131 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.395 0.605 32 H 0.277 0.723 33 H 0.196 0.804 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.137 0.863 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.557 -5.133 -20.345 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.005 4.005 3 H 0.068 0.932 4 C -0.148 4.148 5 C 0.229 3.771 6 O -0.513 6.513 7 N -0.213 5.213 8 C -0.462 4.462 9 H 0.097 0.903 10 C -0.214 4.214 11 N -0.563 5.563 12 Si 0.816 3.184 13 H -0.198 1.198 14 H -0.195 1.195 15 H -0.197 1.197 16 C -0.191 4.191 17 C -0.061 4.061 18 N -0.187 5.187 19 H 0.271 0.729 20 C -0.027 4.027 21 C -0.153 4.153 22 C -0.125 4.125 23 C -0.172 4.172 24 C -0.116 4.116 25 C -0.136 4.136 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.121 0.879 30 H 0.103 0.897 31 H 0.229 0.771 32 H 0.086 0.914 33 H 0.213 0.787 34 H 0.164 0.836 35 H 0.170 0.830 36 H 0.155 0.845 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.187 -4.706 -20.290 20.943 hybrid contribution 0.051 -0.136 1.035 1.045 sum 2.238 -4.842 -19.255 19.980 Atomic orbital electron populations 1.21826 0.94391 1.01887 1.01266 1.18894 0.95606 0.97218 0.88817 0.93162 1.21540 1.02270 0.99878 0.91138 1.20992 0.83404 0.87385 0.85349 1.90455 1.45809 1.27972 1.87050 1.42017 1.50038 1.24317 1.04907 1.19733 1.34217 1.07131 0.85147 0.90299 1.26036 0.96471 0.97404 1.01481 1.69683 1.38930 1.21831 1.25882 0.84885 0.78215 0.78037 0.77284 1.19783 1.19533 1.19712 1.20223 1.05828 0.95189 0.97831 1.21916 0.99201 0.96657 0.88292 1.41669 1.44016 1.12308 1.20715 0.72879 1.18500 0.99431 0.87664 0.97120 1.20376 0.99790 0.98981 0.96136 1.21163 0.99563 0.91952 0.99779 1.20902 1.00756 1.00685 0.94815 1.20484 0.97555 0.95316 0.98271 1.19444 1.02600 0.94872 0.96666 0.93018 0.91618 0.93451 0.87899 0.89695 0.77086 0.91382 0.78689 0.83595 0.82957 0.84507 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 8.81 71.98 0.63 -3.90 16 2 C 0.01 0.49 2.43 -11.54 -0.03 0.46 16 3 H 0.05 1.98 7.95 -2.38 -0.02 1.96 16 4 C -0.11 -3.87 5.02 29.85 0.15 -3.72 16 5 C 0.44 21.36 7.50 87.66 0.66 22.02 16 6 O -0.63 -34.70 13.54 -3.06 -0.04 -34.74 16 7 N -0.58 -30.28 5.29 -306.99 -1.62 -31.90 16 8 C -0.33 -19.23 9.68 84.04 0.81 -18.42 16 9 H 0.08 4.86 7.16 -2.91 -0.02 4.83 16 10 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 11 N -0.92 -50.57 13.05 21.66 0.28 -50.28 16 12 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 16 C -0.18 -5.26 5.05 -18.63 -0.09 -5.35 16 17 C 0.07 1.42 11.26 83.00 0.93 2.36 16 18 N -0.58 -10.69 6.07 -187.61 -1.14 -11.83 16 19 H 0.43 4.59 8.96 -92.71 -0.83 3.76 16 20 C 0.08 1.88 7.28 39.03 0.28 2.16 16 21 C -0.13 -2.49 10.08 22.37 0.23 -2.26 16 22 C -0.11 -1.94 10.01 22.29 0.22 -1.72 16 23 C -0.15 -3.39 9.97 22.03 0.22 -3.17 16 24 C -0.10 -2.74 10.05 22.23 0.22 -2.52 16 25 C -0.13 -3.80 6.35 -20.20 -0.13 -3.93 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 1.82 8.01 -2.39 -0.02 1.80 16 28 H 0.05 1.93 5.95 -2.39 -0.01 1.91 16 29 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 30 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.40 19.83 7.90 -92.71 -0.73 19.10 16 32 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.20 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 36 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.11 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -71.51 316.77 3.63 -67.88 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -0.46 Total: 33.58 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 4.58 Total: -18.32 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -2.48 Total: -94.02 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.04 Total: -34.74 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -71.51 3.63 -67.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278821637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.428 kcal (2) G-P(sol) polarization free energy of solvation -71.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds