Wall clock time and date at job start Mon Mar 30 2020 01:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47051 * 2 1 4 4 C 1.52999 * 109.47163 * 240.00277 * 2 1 3 5 5 C 1.50707 * 109.47389 * 64.99755 * 4 2 1 6 6 O 1.21294 * 119.99690 * 0.02562 * 5 4 2 7 7 N 1.34773 * 119.99872 * 180.02562 * 5 4 2 8 8 C 1.37101 * 119.99582 * 180.02562 * 7 5 4 9 9 H 1.07998 * 120.00055 * 359.97438 * 8 7 5 10 10 C 1.38953 * 119.99398 * 180.02562 * 8 7 5 11 11 N 1.31409 * 120.00526 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99429 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47069 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.46980 * 119.99669 * 12 10 8 15 15 H 1.48493 * 109.46997 * 239.99945 * 12 10 8 16 16 C 1.50695 * 109.47412 * 119.99706 * 2 1 3 17 17 C 1.34241 * 126.49588 * 59.97908 * 16 2 1 18 18 N 1.36833 * 109.93022 * 180.02562 * 17 16 2 19 19 H 0.97000 * 125.06652 * 179.97438 * 18 17 16 20 20 C 1.37688 * 109.87243 * 0.02562 * 18 17 16 21 21 C 1.39129 * 133.50461 * 179.71370 * 20 18 17 22 22 C 1.37746 * 119.77704 * 179.87274 * 21 20 18 23 23 C 1.38833 * 120.66487 * 0.46272 * 22 21 20 24 24 C 1.36628 * 120.53172 * 359.74671 * 23 22 21 25 25 C 1.39629 * 119.76327 * 0.02562 * 24 23 22 26 26 H 1.09005 * 109.46944 * 300.00047 * 1 2 3 27 27 H 1.09005 * 109.46977 * 59.99538 * 1 2 3 28 28 H 1.09002 * 109.47051 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47372 * 184.99624 * 4 2 1 30 30 H 1.08999 * 109.47190 * 304.99428 * 4 2 1 31 31 H 0.96997 * 120.00219 * 359.97438 * 7 5 4 32 32 H 0.96998 * 119.99902 * 179.97438 * 11 10 8 33 33 H 1.08002 * 125.03847 * 0.02562 * 17 16 2 34 34 H 1.08001 * 120.10753 * 0.28870 * 21 20 18 35 35 H 1.07996 * 119.66446 * 180.25461 * 22 21 20 36 36 H 1.07999 * 119.73073 * 179.75936 * 23 22 21 37 37 H 1.07997 * 120.11646 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 8 1.0116 1.0876 -2.3633 7 7 1.9844 -0.3918 -3.7002 8 6 1.6221 0.3165 -4.8167 9 1 1.0614 1.2340 -4.7158 10 6 1.9755 -0.1467 -6.0782 11 7 2.6573 -1.2633 -6.2011 12 14 1.4812 0.8181 -7.5996 13 1 0.7248 2.0297 -7.1933 14 1 2.6993 1.2219 -8.3470 15 1 0.6263 -0.0306 -8.4678 16 6 2.0324 -0.7103 1.2304 17 6 1.7895 -1.9859 1.5711 18 7 2.4103 -2.2788 2.7548 19 1 2.3795 -3.1388 3.2023 20 6 3.0844 -1.1706 3.2166 21 6 3.8574 -0.9215 4.3462 22 6 4.4161 0.3238 4.5318 23 6 4.2082 1.3381 3.6070 24 6 3.4490 1.1167 2.4929 25 6 2.8769 -0.1395 2.2824 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1263 -0.7994 -1.2057 30 1 1.6054 -1.7198 -1.2952 31 1 2.4883 -1.2157 -3.7908 32 1 2.9036 -1.5868 -7.0818 33 1 1.1926 -2.6783 0.9961 34 1 4.0243 -1.7040 5.0717 35 1 5.0193 0.5139 5.4073 36 1 4.6503 2.3100 3.7696 37 1 3.2913 1.9107 1.7781 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278821643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:41 Heat of formation + Delta-G solvation = 4.160630 kcal Electronic energy + Delta-G solvation = -19853.436257 eV Core-core repulsion = 16788.339953 eV Total energy + Delta-G solvation = -3065.096304 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.23807 -38.36166 -36.90675 -34.90550 -33.67570 -31.25639 -31.10762 -29.32901 -28.22826 -27.32302 -24.60409 -22.80464 -22.53273 -21.67003 -19.28009 -18.46876 -17.78689 -17.67731 -16.37366 -15.69444 -15.37954 -14.57047 -14.48285 -14.40033 -13.96515 -13.85751 -13.72056 -13.25486 -12.92706 -12.56100 -12.32595 -11.83695 -11.64530 -11.60015 -11.44503 -11.21150 -10.98478 -10.65928 -10.54902 -10.31488 -10.24146 -10.15619 -9.49913 -9.43379 -8.25601 -8.17524 -7.90862 -7.54026 -6.37655 -3.78102 1.17063 1.66555 2.78229 3.15642 3.18878 3.29113 3.36513 3.96039 3.98739 4.21528 4.76150 4.80711 4.99481 5.10361 5.18912 5.29404 5.36162 5.49223 5.57446 5.67190 5.74685 5.87041 5.90201 6.05992 6.10925 6.18522 6.34738 6.41853 6.49536 6.63460 6.66465 6.71086 6.79472 6.94571 7.04650 7.21801 7.56562 7.59384 8.11426 8.66472 9.22519 9.60937 10.12540 10.80237 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033289 B = 0.003558 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.904558 B = 7867.640397 C = 8014.410829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.004 3.996 3 H 0.081 0.919 4 C -0.122 4.122 5 C 0.443 3.557 6 O -0.592 6.592 7 N -0.565 5.565 8 C -0.299 4.299 9 H 0.103 0.897 10 C 0.021 3.979 11 N -0.902 5.902 12 Si 0.928 3.072 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.282 1.282 16 C -0.147 4.147 17 C 0.045 3.955 18 N -0.598 5.598 19 H 0.413 0.587 20 C 0.094 3.906 21 C -0.136 4.136 22 C -0.102 4.102 23 C -0.153 4.153 24 C -0.064 4.064 25 C -0.101 4.101 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.392 0.608 32 H 0.270 0.730 33 H 0.169 0.831 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.028 -3.349 18.817 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.016 4.016 3 H 0.100 0.900 4 C -0.163 4.163 5 C 0.229 3.771 6 O -0.478 6.478 7 N -0.201 5.201 8 C -0.428 4.428 9 H 0.121 0.879 10 C -0.180 4.180 11 N -0.544 5.544 12 Si 0.755 3.245 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.154 4.154 17 C -0.080 4.080 18 N -0.201 5.201 19 H 0.249 0.751 20 C -0.013 4.013 21 C -0.157 4.157 22 C -0.122 4.122 23 C -0.173 4.173 24 C -0.083 4.083 25 C -0.106 4.106 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.225 0.775 32 H 0.080 0.920 33 H 0.186 0.814 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.640 -2.887 18.729 19.021 hybrid contribution 0.196 -0.702 -0.669 0.990 sum 1.836 -3.589 18.060 18.504 Atomic orbital electron populations 1.21928 0.94372 1.00887 1.02860 1.19144 0.95700 0.98669 0.88085 0.90043 1.21571 1.01602 0.99427 0.93659 1.19976 0.85019 0.87687 0.84402 1.90471 1.44677 1.26290 1.86383 1.41941 1.49368 1.24119 1.04658 1.19775 1.32730 1.06876 0.83438 0.87877 1.25258 0.96980 0.96548 0.99245 1.69623 1.38895 1.21071 1.24819 0.85825 0.78234 0.79523 0.80911 1.19226 1.20798 1.20824 1.20487 1.03277 0.93738 0.97914 1.21590 1.00731 0.97402 0.88302 1.41697 1.45352 1.11937 1.21109 0.75115 1.18266 0.98697 0.87625 0.96738 1.19961 1.01227 0.98086 0.96398 1.20752 0.99683 0.92472 0.99249 1.20601 1.01818 0.99350 0.95494 1.20378 0.95550 0.95283 0.97068 1.19178 1.01804 0.93867 0.95767 0.93769 0.89672 0.93999 0.90598 0.90783 0.77466 0.92000 0.81428 0.86662 0.86127 0.86241 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.81 37.16 0.33 -2.03 16 2 C 0.00 0.06 2.43 -91.78 -0.22 -0.16 16 3 H 0.08 1.50 7.95 -51.93 -0.41 1.08 16 4 C -0.12 -2.18 5.02 -27.88 -0.14 -2.32 16 5 C 0.44 10.41 7.50 -10.98 -0.08 10.32 16 6 O -0.59 -15.65 13.54 5.55 0.08 -15.57 16 7 N -0.57 -14.46 5.29 -10.96 -0.06 -14.52 16 8 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 9 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 10 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 11 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 12 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 C -0.15 -2.16 5.05 -102.72 -0.52 -2.68 16 17 C 0.04 0.54 11.26 -16.73 -0.19 0.35 16 18 N -0.60 -6.40 6.07 -10.65 -0.06 -6.47 16 19 H 0.41 2.99 8.96 -40.82 -0.37 2.62 16 20 C 0.09 1.20 7.28 -83.98 -0.61 0.59 16 21 C -0.14 -1.49 10.08 -39.43 -0.40 -1.89 16 22 C -0.10 -1.08 10.01 -39.54 -0.40 -1.48 16 23 C -0.15 -1.77 9.97 -39.94 -0.40 -2.17 16 24 C -0.06 -0.88 10.05 -39.64 -0.40 -1.28 16 25 C -0.10 -1.48 6.35 -105.14 -0.67 -2.15 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.67 5.95 -51.93 -0.31 1.36 16 28 H 0.04 0.60 8.02 -51.93 -0.42 0.19 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 31 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 316.77 15.07 4.77 4.77 Total: -1.00 -32.03 316.77 -8.23 -40.26 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -4.72 Total: 12.38 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -3.93 Total: -12.94 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.60 Total: -45.08 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.08 Total: -15.57 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.03 -8.23 -40.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278821643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.419 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds