Wall clock time and date at job start Mon Mar 30 2020 01:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47118 * 148.73287 * 3 2 1 5 5 C 1.36904 * 119.99948 * 264.61415 * 4 3 2 6 6 H 1.08008 * 119.99310 * 130.51913 * 5 4 3 7 7 C 1.39007 * 120.00359 * 310.51459 * 5 4 3 8 8 N 1.31389 * 119.99967 * 170.19614 * 7 5 4 9 9 Si 1.86799 * 120.00255 * 350.19907 * 7 5 4 10 10 H 1.48494 * 109.47319 * 95.23251 * 9 7 5 11 11 H 1.48497 * 109.47080 * 215.23674 * 9 7 5 12 12 H 1.48504 * 109.46623 * 335.23237 * 9 7 5 13 13 C 1.34783 * 119.99671 * 84.62252 * 4 3 2 14 14 O 1.21628 * 120.00074 * 2.04746 * 13 4 3 15 15 C 1.47406 * 119.99801 * 182.05570 * 13 4 3 16 16 C 1.39854 * 120.07962 * 137.58695 * 15 13 4 17 17 C 1.37596 * 119.93011 * 180.02562 * 16 15 13 18 18 C 1.39230 * 120.07124 * 0.02562 * 17 16 15 19 19 N 1.39052 * 119.92372 * 179.97438 * 18 17 16 20 20 C 1.46507 * 119.99983 * 0.02562 * 19 18 17 21 21 C 1.46500 * 120.00229 * 180.02562 * 19 18 17 22 22 C 1.39232 * 120.14947 * 0.25534 * 18 17 16 23 23 C 1.37587 * 120.07618 * 359.43774 * 22 18 17 24 24 H 4.40638 * 5.51496 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47216 * 28.73421 * 3 2 1 26 26 H 1.09003 * 109.46732 * 268.73598 * 3 2 1 27 27 H 0.96997 * 120.00034 * 180.02562 * 8 7 5 28 28 H 1.08004 * 120.03153 * 359.97438 * 16 15 13 29 29 H 1.08003 * 119.96065 * 179.97438 * 17 16 15 30 30 H 1.08995 * 109.46924 * 89.99661 * 20 19 18 31 31 H 1.08998 * 109.47009 * 210.00112 * 20 19 18 32 32 H 1.09005 * 109.46951 * 329.99630 * 20 19 18 33 33 H 1.09000 * 109.47079 * 90.00355 * 21 19 18 34 34 H 1.09000 * 109.47106 * 210.00114 * 21 19 18 35 35 H 1.08992 * 109.46890 * 330.00083 * 21 19 18 36 36 H 1.07997 * 119.95741 * 179.70514 * 22 18 17 37 37 H 1.08000 * 120.03795 * 180.27812 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1815 -0.7169 5 6 3.4669 1.0889 -2.0415 6 1 3.0790 1.8085 -2.7474 7 6 4.3043 0.0689 -2.4780 8 7 4.4710 -0.1390 -3.7646 9 14 5.1927 -1.0064 -1.2355 10 1 4.4051 -2.2427 -0.9980 11 1 6.5335 -1.3671 -1.7621 12 1 5.3458 -0.2640 0.0415 13 6 3.2547 2.3589 -0.0722 14 8 2.9944 2.4325 1.1136 15 6 3.7023 3.5575 -0.8044 16 6 3.0755 4.7881 -0.5841 17 6 3.4955 5.9049 -1.2696 18 6 4.5427 5.8105 -2.1821 19 7 4.9643 6.9408 -2.8736 20 6 4.3069 8.2293 -2.6411 21 6 6.0657 6.8434 -3.8346 22 6 5.1650 4.5856 -2.4082 23 6 4.7543 3.4664 -1.7215 24 1 -1.0502 -0.0004 0.0000 25 1 3.0097 -0.9003 -0.4940 26 1 3.0092 0.0235 1.0275 27 1 5.0551 -0.8510 -4.0692 28 1 2.2623 4.8617 0.1228 29 1 3.0116 6.8554 -1.1001 30 1 4.8159 8.7565 -1.8342 31 1 4.3499 8.8285 -3.5506 32 1 3.2657 8.0615 -2.3655 33 1 5.6668 6.6116 -4.8222 34 1 6.6001 7.7926 -3.8723 35 1 6.7496 6.0535 -3.5244 36 1 5.9739 4.5150 -3.1203 37 1 5.2404 2.5175 -1.8940 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281029216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:56 Heat of formation + Delta-G solvation = 76.012052 kcal Electronic energy + Delta-G solvation = -20511.255413 eV Core-core repulsion = 17449.274820 eV Total energy + Delta-G solvation = -3061.980593 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.55931 -38.39716 -35.67462 -35.10140 -32.71118 -31.62448 -30.67535 -29.74767 -28.01890 -26.82331 -25.23913 -24.24484 -21.64952 -21.06977 -19.18352 -18.44128 -17.43159 -16.60363 -16.02031 -15.66434 -15.02618 -14.96748 -14.57827 -14.18445 -13.82912 -13.31758 -13.13185 -13.07874 -12.96404 -12.61341 -12.44322 -12.09513 -11.93048 -11.88746 -11.74215 -11.41705 -11.08105 -10.77962 -10.23927 -10.22049 -9.81928 -9.43039 -9.36143 -9.26434 -8.65862 -8.32179 -7.80939 -6.90015 -6.46852 -4.22259 1.90464 2.11830 3.01980 3.17291 3.24837 3.29258 3.31569 3.53765 3.77960 4.08576 4.49999 4.69324 4.89759 5.05468 5.11390 5.16030 5.28243 5.46969 5.49846 5.63775 5.70980 5.76057 5.89317 6.05314 6.08954 6.12044 6.19830 6.26383 6.55102 6.72247 6.73337 6.99476 7.30768 7.34351 7.39181 7.51244 7.84146 8.04375 8.27412 8.28268 8.91758 9.26087 9.62230 10.61843 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019305 B = 0.006230 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.081860 B = 4493.643533 C = 5405.234986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.162 4.162 3 C 0.201 3.799 4 N -0.464 5.464 5 C -0.336 4.336 6 H 0.104 0.896 7 C 0.068 3.932 8 N -0.863 5.863 9 Si 0.866 3.134 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.255 1.255 13 C 0.542 3.458 14 O -0.589 6.589 15 C -0.155 4.155 16 C -0.032 4.032 17 C -0.217 4.217 18 C 0.219 3.781 19 N -0.640 5.640 20 C 0.096 3.904 21 C 0.095 3.905 22 C -0.212 4.212 23 C 0.000 4.000 24 H 0.212 0.788 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.276 0.724 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 10.248 0.122 10.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.164 4.164 3 C 0.079 3.921 4 N -0.185 5.185 5 C -0.464 4.464 6 H 0.122 0.878 7 C -0.140 4.140 8 N -0.498 5.498 9 Si 0.692 3.308 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.179 1.179 13 C 0.333 3.667 14 O -0.473 6.473 15 C -0.159 4.159 16 C -0.052 4.052 17 C -0.240 4.240 18 C 0.118 3.882 19 N -0.352 5.352 20 C -0.048 4.048 21 C -0.049 4.049 22 C -0.234 4.234 23 C -0.019 4.019 24 H 0.229 0.771 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.719 10.305 0.434 10.457 hybrid contribution 0.173 -0.719 0.156 0.755 sum 1.892 9.587 0.589 9.789 Atomic orbital electron populations 1.24645 0.95621 1.01673 1.03029 1.23781 0.94940 0.99256 0.98393 1.18698 0.83801 0.91084 0.98468 1.43545 1.57509 1.06694 1.10739 1.19049 1.28682 1.16854 0.81781 0.87819 1.25480 0.95624 0.97093 0.95775 1.69657 1.35939 1.30834 1.13324 0.87012 0.79855 0.81166 0.82777 1.19713 1.20866 1.17918 1.18415 0.78490 0.84039 0.85779 1.90642 1.54832 1.86123 1.15685 1.19523 1.00956 0.93275 1.02165 1.20810 0.97388 0.90868 0.96149 1.20376 1.01464 0.99004 1.03119 1.17925 0.92839 0.86484 0.90918 1.46119 1.37518 1.06611 1.44986 1.21572 0.97986 0.84626 1.00579 1.21597 0.89297 1.02018 0.91956 1.20617 1.04849 0.91501 1.06441 1.21460 0.93176 0.97948 0.89345 0.77143 0.89295 0.89146 0.91382 0.86271 0.86473 0.93777 0.92034 0.91293 0.93530 0.92098 0.91074 0.86210 0.83705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.44 19.25 29.55 0.57 -3.87 16 2 C -0.16 -3.59 13.62 -37.12 -0.51 -4.10 16 3 C 0.20 4.64 4.28 -6.83 -0.03 4.61 16 4 N -0.46 -11.49 1.98 -119.16 -0.24 -11.73 16 5 C -0.34 -8.67 6.61 -15.00 -0.10 -8.77 16 6 H 0.10 2.91 7.50 -52.48 -0.39 2.52 16 7 C 0.07 1.73 5.16 -17.46 -0.09 1.64 16 8 N -0.86 -23.12 13.96 55.50 0.77 -22.35 16 9 Si 0.87 19.62 24.87 -169.99 -4.23 15.39 16 10 H -0.27 -5.94 6.91 56.52 0.39 -5.55 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.26 -5.83 7.01 56.52 0.40 -5.43 16 13 C 0.54 13.37 7.21 -12.53 -0.09 13.28 16 14 O -0.59 -15.48 16.61 5.25 0.09 -15.40 16 15 C -0.15 -3.41 5.28 -104.95 -0.55 -3.96 16 16 C -0.03 -0.63 9.65 -39.21 -0.38 -1.01 16 17 C -0.22 -3.63 9.18 -39.45 -0.36 -4.00 16 18 C 0.22 3.63 6.55 -83.85 -0.55 3.08 16 19 N -0.64 -8.50 3.39 -187.54 -0.64 -9.13 16 20 C 0.10 0.97 10.18 59.85 0.61 1.58 16 21 C 0.09 1.02 10.17 59.85 0.61 1.63 16 22 C -0.21 -3.82 9.18 -39.45 -0.36 -4.18 16 23 C 0.00 0.00 8.09 -39.21 -0.32 -0.32 16 24 H 0.21 3.03 7.80 -54.08 -0.42 2.61 16 25 H 0.09 2.01 4.30 -51.93 -0.22 1.79 16 26 H 0.09 2.01 7.56 -51.93 -0.39 1.62 16 27 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 29 H 0.12 1.63 6.11 -52.48 -0.32 1.31 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 32 H 0.07 0.70 6.17 -51.93 -0.32 0.38 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 35 H 0.07 0.78 6.18 -51.93 -0.32 0.46 16 36 H 0.12 1.92 6.12 -52.49 -0.32 1.60 16 37 H 0.15 3.24 6.27 -52.49 -0.33 2.91 16 LS Contribution 313.05 15.07 4.72 4.72 Total: -1.00 -30.61 313.05 -5.37 -35.99 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.30 Total: 6.89 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.55 Total: -4.38 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.10 Total: -43.20 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.09 Total: -15.40 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.23 Total: 15.39 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.61 -5.37 -35.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281029216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.998 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds