Wall clock time and date at job start Mon Mar 30 2020 01:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47118 * 148.73287 * 3 2 1 5 5 C 1.36904 * 119.99948 * 264.61415 * 4 3 2 6 6 H 1.08008 * 119.99310 * 130.51913 * 5 4 3 7 7 C 1.39007 * 120.00359 * 310.51459 * 5 4 3 8 8 N 1.31389 * 119.99967 * 170.19614 * 7 5 4 9 9 Si 1.86799 * 120.00255 * 350.19907 * 7 5 4 10 10 H 1.48494 * 109.47319 * 95.23251 * 9 7 5 11 11 H 1.48497 * 109.47080 * 215.23674 * 9 7 5 12 12 H 1.48504 * 109.46623 * 335.23237 * 9 7 5 13 13 C 1.34783 * 119.99671 * 84.62252 * 4 3 2 14 14 O 1.21628 * 120.00074 * 2.04746 * 13 4 3 15 15 C 1.47406 * 119.99801 * 182.05570 * 13 4 3 16 16 C 1.39854 * 120.07962 * 137.58695 * 15 13 4 17 17 C 1.37596 * 119.93011 * 180.02562 * 16 15 13 18 18 C 1.39230 * 120.07124 * 0.02562 * 17 16 15 19 19 N 1.39052 * 119.92372 * 179.97438 * 18 17 16 20 20 C 1.46507 * 119.99983 * 0.02562 * 19 18 17 21 21 C 1.46500 * 120.00229 * 180.02562 * 19 18 17 22 22 C 1.39232 * 120.14947 * 0.25534 * 18 17 16 23 23 C 1.37587 * 120.07618 * 359.43774 * 22 18 17 24 24 H 4.40638 * 5.51496 * 179.97438 * 4 1 2 25 25 H 1.08998 * 109.47216 * 28.73421 * 3 2 1 26 26 H 1.09003 * 109.46732 * 268.73598 * 3 2 1 27 27 H 0.96997 * 120.00034 * 180.02562 * 8 7 5 28 28 H 1.08004 * 120.03153 * 359.97438 * 16 15 13 29 29 H 1.08003 * 119.96065 * 179.97438 * 17 16 15 30 30 H 1.08995 * 109.46924 * 89.99661 * 20 19 18 31 31 H 1.08998 * 109.47009 * 210.00112 * 20 19 18 32 32 H 1.09005 * 109.46951 * 329.99630 * 20 19 18 33 33 H 1.09000 * 109.47079 * 90.00355 * 21 19 18 34 34 H 1.09000 * 109.47106 * 210.00114 * 21 19 18 35 35 H 1.08992 * 109.46890 * 330.00083 * 21 19 18 36 36 H 1.07997 * 119.95741 * 179.70514 * 22 18 17 37 37 H 1.08000 * 120.03795 * 180.27812 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1815 -0.7169 5 6 3.4669 1.0889 -2.0415 6 1 3.0790 1.8085 -2.7474 7 6 4.3043 0.0689 -2.4780 8 7 4.4710 -0.1390 -3.7646 9 14 5.1927 -1.0064 -1.2355 10 1 4.4051 -2.2427 -0.9980 11 1 6.5335 -1.3671 -1.7621 12 1 5.3458 -0.2640 0.0415 13 6 3.2547 2.3589 -0.0722 14 8 2.9944 2.4325 1.1136 15 6 3.7023 3.5575 -0.8044 16 6 3.0755 4.7881 -0.5841 17 6 3.4955 5.9049 -1.2696 18 6 4.5427 5.8105 -2.1821 19 7 4.9643 6.9408 -2.8736 20 6 4.3069 8.2293 -2.6411 21 6 6.0657 6.8434 -3.8346 22 6 5.1650 4.5856 -2.4082 23 6 4.7543 3.4664 -1.7215 24 1 -1.0502 -0.0004 0.0000 25 1 3.0097 -0.9003 -0.4940 26 1 3.0092 0.0235 1.0275 27 1 5.0551 -0.8510 -4.0692 28 1 2.2623 4.8617 0.1228 29 1 3.0116 6.8554 -1.1001 30 1 4.8159 8.7565 -1.8342 31 1 4.3499 8.8285 -3.5506 32 1 3.2657 8.0615 -2.3655 33 1 5.6668 6.6116 -4.8222 34 1 6.6001 7.7926 -3.8723 35 1 6.7496 6.0535 -3.5244 36 1 5.9739 4.5150 -3.1203 37 1 5.2404 2.5175 -1.8940 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281029216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:56 Heat of formation + Delta-G solvation = 57.732819 kcal Electronic energy + Delta-G solvation = -20512.048060 eV Core-core repulsion = 17449.274820 eV Total energy + Delta-G solvation = -3062.773240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20569 -39.91119 -37.15285 -36.80832 -34.50740 -33.47028 -32.06302 -31.16344 -28.99135 -28.47270 -27.03466 -25.65054 -23.07329 -22.49279 -20.92139 -20.19828 -19.01666 -17.97093 -17.77264 -17.33597 -16.47410 -16.32425 -15.93140 -15.83512 -15.35609 -14.88689 -14.86448 -14.64116 -14.41811 -14.18958 -13.81621 -13.39595 -13.26501 -13.13138 -12.97595 -12.82372 -12.78078 -12.59901 -12.03954 -11.64351 -11.54210 -11.21379 -11.05084 -10.69797 -10.51948 -9.86379 -9.71003 -8.47180 -8.14480 -6.24985 0.38043 0.65476 1.19694 1.30668 1.41527 1.62181 1.90707 2.01451 2.18136 2.27906 2.83531 2.86942 3.15746 3.58176 3.97509 4.08256 4.12597 4.27230 4.30192 4.45803 4.47407 4.56552 4.60474 4.69269 4.84511 4.86419 4.95091 4.95862 5.04632 5.26841 5.35107 5.43712 5.52106 5.80727 5.91371 6.08840 6.19861 6.39725 6.56471 6.68472 6.93221 7.30620 7.69543 8.65177 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019305 B = 0.006230 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.081860 B = 4493.643533 C = 5405.234986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.233 4.233 3 C 0.199 3.801 4 N -0.471 5.471 5 C -0.327 4.327 6 H 0.072 0.928 7 C 0.037 3.963 8 N -0.896 5.896 9 Si 0.914 3.086 10 H -0.256 1.256 11 H -0.274 1.274 12 H -0.264 1.264 13 C 0.535 3.465 14 O -0.615 6.615 15 C -0.195 4.195 16 C -0.036 4.036 17 C -0.211 4.211 18 C 0.231 3.769 19 N -0.637 5.637 20 C 0.086 3.914 21 C 0.086 3.914 22 C -0.219 4.219 23 C -0.012 4.012 24 H 0.260 0.740 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.281 0.719 28 H 0.121 0.879 29 H 0.152 0.848 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.136 0.864 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.317 12.117 -0.167 12.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.234 4.234 3 C 0.078 3.922 4 N -0.192 5.192 5 C -0.455 4.455 6 H 0.090 0.910 7 C -0.168 4.168 8 N -0.533 5.533 9 Si 0.739 3.261 10 H -0.181 1.181 11 H -0.200 1.200 12 H -0.188 1.188 13 C 0.327 3.673 14 O -0.501 6.501 15 C -0.200 4.200 16 C -0.056 4.056 17 C -0.233 4.233 18 C 0.126 3.874 19 N -0.347 5.347 20 C -0.056 4.056 21 C -0.056 4.056 22 C -0.241 4.241 23 C -0.032 4.032 24 H 0.276 0.724 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.091 0.909 28 H 0.139 0.861 29 H 0.169 0.831 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.154 0.846 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.383 12.203 0.115 12.282 hybrid contribution 0.224 -1.093 0.172 1.129 sum 1.607 11.110 0.287 11.229 Atomic orbital electron populations 1.25726 0.96506 0.98255 0.99642 1.23920 0.95561 1.02414 1.01546 1.18629 0.85252 0.90287 0.98049 1.43632 1.57777 1.07428 1.10337 1.18669 1.28774 1.16234 0.81780 0.91032 1.25909 0.95835 0.98023 0.97000 1.69719 1.36988 1.31929 1.14654 0.86246 0.79327 0.80141 0.80435 1.18114 1.19976 1.18796 1.18925 0.77833 0.84792 0.85712 1.90587 1.56230 1.86624 1.16666 1.19496 1.03001 0.93357 1.04151 1.20920 0.97362 0.90742 0.96544 1.20661 1.01179 0.99393 1.02092 1.18016 0.91894 0.87111 0.90330 1.46482 1.37602 1.06577 1.44016 1.21854 0.97936 0.83246 1.02531 1.21816 0.88740 1.03685 0.91402 1.20730 1.05539 0.91467 1.06388 1.21230 0.93520 0.98053 0.90368 0.72419 0.89425 0.89302 0.90880 0.86080 0.83054 0.92344 0.89448 0.91114 0.93077 0.88961 0.91613 0.84644 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.68 19.25 74.32 1.43 -5.25 16 2 C -0.23 -10.35 13.62 31.13 0.42 -9.93 16 3 C 0.20 9.45 4.28 84.57 0.36 9.82 16 4 N -0.47 -24.31 1.98 -649.17 -1.29 -25.60 16 5 C -0.33 -17.66 6.61 84.09 0.56 -17.10 16 6 H 0.07 4.28 7.50 -2.91 -0.02 4.25 16 7 C 0.04 1.95 5.16 84.94 0.44 2.39 16 8 N -0.90 -49.33 13.96 21.67 0.30 -49.03 16 9 Si 0.91 41.32 24.87 68.60 1.71 43.02 16 10 H -0.26 -10.88 6.91 99.48 0.69 -10.19 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.26 -12.18 7.01 99.48 0.70 -11.49 16 13 C 0.53 27.60 7.21 86.66 0.62 28.22 16 14 O -0.61 -33.57 16.61 -4.12 -0.07 -33.64 16 15 C -0.20 -8.96 5.28 -20.08 -0.11 -9.06 16 16 C -0.04 -1.40 9.65 22.51 0.22 -1.18 16 17 C -0.21 -6.69 9.18 22.36 0.21 -6.48 16 18 C 0.23 7.24 6.55 38.47 0.25 7.50 16 19 N -0.64 -14.82 3.39 -747.26 -2.53 -17.35 16 20 C 0.09 1.38 10.18 127.77 1.30 2.68 16 21 C 0.09 1.58 10.17 127.77 1.30 2.88 16 22 C -0.22 -7.89 9.18 22.35 0.21 -7.68 16 23 C -0.01 -0.53 8.09 22.51 0.18 -0.35 16 24 H 0.26 6.33 7.80 -4.41 -0.03 6.29 16 25 H 0.09 4.05 4.30 -2.39 -0.01 4.04 16 26 H 0.09 4.11 7.56 -2.39 -0.02 4.09 16 27 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 28 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 29 H 0.15 3.69 6.11 -2.91 -0.02 3.67 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 1.00 8.07 -2.39 -0.02 0.98 16 32 H 0.07 1.13 6.17 -2.38 -0.01 1.12 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.16 8.07 -2.39 -0.02 1.14 16 35 H 0.07 1.30 6.18 -2.39 -0.01 1.29 16 36 H 0.14 4.31 6.12 -2.91 -0.02 4.30 16 37 H 0.12 5.70 6.27 -2.91 -0.02 5.68 16 Total: -1.00 -68.93 313.05 6.56 -62.36 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 1.05 Total: 23.78 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 7.39 Total: -3.55 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -3.52 Total: -91.98 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.07 Total: -33.64 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.71 Total: 43.02 kcal Total: -68.93 6.56 -62.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281029216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.095 kcal (2) G-P(sol) polarization free energy of solvation -68.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds