Wall clock time and date at job start Mon Mar 30 2020 01:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46806 * 215.30735 * 3 2 1 5 5 C 1.36937 * 120.00151 * 263.58694 * 4 3 2 6 6 H 1.07999 * 120.00034 * 197.03697 * 5 4 3 7 7 C 1.38816 * 120.00180 * 17.03375 * 5 4 3 8 8 N 1.31621 * 119.99597 * 19.45502 * 7 5 4 9 9 Si 1.86793 * 120.00086 * 199.45401 * 7 5 4 10 10 H 1.48501 * 109.47295 * 90.00348 * 9 7 5 11 11 H 1.48501 * 109.46879 * 210.00123 * 9 7 5 12 12 H 1.48500 * 109.47235 * 329.99664 * 9 7 5 13 13 C 1.46500 * 119.99680 * 83.58891 * 4 3 2 14 14 C 1.50699 * 109.47017 * 269.99634 * 13 4 3 15 15 C 1.38307 * 119.96607 * 270.27400 * 14 13 4 16 16 C 1.38255 * 120.13955 * 180.27431 * 15 14 13 17 17 C 1.38131 * 120.07193 * 359.45323 * 16 15 14 18 18 C 1.38855 * 119.92744 * 0.27468 * 17 16 15 19 19 N 1.39924 * 120.06926 * 179.97438 * 18 17 16 20 20 C 1.34782 * 119.99744 * 31.85441 * 19 18 17 21 21 C 1.50701 * 119.99821 * 185.49211 * 20 19 18 22 22 O 1.21284 * 120.00168 * 5.49753 * 20 19 18 23 23 C 1.38092 * 119.96373 * 90.00510 * 14 13 4 24 24 H 4.40641 * 5.51454 * 179.97438 * 4 1 2 25 25 H 1.09008 * 109.46940 * 95.31591 * 3 2 1 26 26 H 1.08995 * 109.47651 * 335.31330 * 3 2 1 27 27 H 0.96997 * 120.00096 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.47035 * 149.99666 * 13 4 3 29 29 H 1.09004 * 109.47372 * 29.99941 * 13 4 3 30 30 H 1.08003 * 119.92952 * 0.02562 * 15 14 13 31 31 H 1.08004 * 119.96248 * 179.72543 * 16 15 14 32 32 H 1.08004 * 120.03566 * 180.24768 * 17 16 15 33 33 H 0.97000 * 120.00158 * 211.85329 * 19 18 17 34 34 H 1.09003 * 109.46943 * 0.02562 * 21 20 19 35 35 H 1.09002 * 109.46900 * 120.00267 * 21 20 19 36 36 H 1.08995 * 109.47556 * 240.00471 * 21 20 19 37 37 H 1.07999 * 120.03575 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.1281 0.7983 5 6 3.4864 2.3002 0.1842 6 1 4.0931 3.0234 0.7088 7 6 3.0641 2.5587 -1.1126 8 7 2.0416 1.8997 -1.6154 9 14 3.9468 3.8416 -2.1441 10 1 5.0518 3.1962 -2.8976 11 1 2.9884 4.4542 -3.0988 12 1 4.5019 4.8944 -1.2560 13 6 3.2444 1.0015 2.2537 14 6 1.9509 1.4333 2.8951 15 6 1.7643 2.7567 3.2508 16 6 0.5812 3.1557 3.8447 17 6 -0.4228 2.2353 4.0744 18 6 -0.2406 0.9069 3.7134 19 7 -1.2555 -0.0281 3.9452 20 6 -2.5473 0.3529 3.8936 21 6 -3.6356 -0.6216 4.2639 22 8 -2.8340 1.4798 3.5490 23 6 0.9511 0.5082 3.1222 24 1 -1.0502 -0.0002 -0.0003 25 1 3.0093 0.0960 -1.0233 26 1 3.0099 -0.9328 0.4292 27 1 1.7462 2.0806 -2.5214 28 1 4.0568 1.6335 2.6126 29 1 3.4500 -0.0370 2.5135 30 1 2.5459 3.4793 3.0679 31 1 0.4403 4.1891 4.1253 32 1 -1.3482 2.5484 4.5348 33 1 -1.0293 -0.9504 4.1431 34 1 -3.1890 -1.5754 4.5449 35 1 -4.2066 -0.2265 5.1042 36 1 -4.2983 -0.7677 3.4110 37 1 1.0960 -0.5244 2.8406 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281276455.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:49 Heat of formation + Delta-G solvation = 77.128103 kcal Electronic energy + Delta-G solvation = -20685.182346 eV Core-core repulsion = 17623.250149 eV Total energy + Delta-G solvation = -3061.932197 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.16867 -38.21257 -35.98503 -34.45174 -31.94067 -31.50770 -30.58308 -29.96340 -28.21634 -26.17061 -25.56608 -22.42436 -21.99659 -21.17953 -19.55295 -17.41801 -17.25846 -16.54219 -16.35289 -15.69738 -15.23347 -14.92920 -14.23498 -14.07210 -13.72112 -13.35892 -13.19208 -13.04255 -12.77510 -12.51631 -12.22374 -12.00678 -11.44530 -11.32976 -11.11556 -10.89481 -10.80243 -10.46776 -10.23066 -10.06929 -9.95349 -9.58707 -8.91418 -8.83011 -8.39204 -8.00322 -7.55837 -7.01329 -5.78201 -3.19241 1.84768 2.07155 2.78718 3.27307 3.37958 3.44661 3.46494 4.22280 4.44466 4.48109 4.57753 4.74490 5.01124 5.25705 5.35505 5.45838 5.60392 5.64787 5.74655 5.79949 5.90477 5.95305 6.02540 6.15262 6.32556 6.53044 6.62354 6.73632 6.85069 6.88503 7.12509 7.27853 7.41071 7.48860 7.59078 7.67917 7.74401 8.26357 8.28218 9.10811 9.27104 9.75579 10.21097 11.24996 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022771 B = 0.005629 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.333321 B = 4972.622483 C = 5241.587665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.094 4.094 3 C 0.266 3.734 4 N -0.575 5.575 5 C -0.260 4.260 6 H 0.077 0.923 7 C 0.003 3.997 8 N -0.888 5.888 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.293 1.293 12 H -0.280 1.280 13 C 0.177 3.823 14 C -0.064 4.064 15 C -0.113 4.113 16 C -0.110 4.110 17 C -0.137 4.137 18 C 0.133 3.867 19 N -0.669 5.669 20 C 0.505 3.495 21 C -0.168 4.168 22 O -0.528 6.528 23 C -0.124 4.124 24 H 0.183 0.817 25 H 0.101 0.899 26 H 0.034 0.966 27 H 0.254 0.746 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.406 0.594 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 -7.265 12.075 14.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.096 4.096 3 C 0.141 3.859 4 N -0.293 5.293 5 C -0.389 4.389 6 H 0.095 0.905 7 C -0.196 4.196 8 N -0.530 5.530 9 Si 0.734 3.266 10 H -0.214 1.214 11 H -0.219 1.219 12 H -0.205 1.205 13 C 0.051 3.949 14 C -0.068 4.068 15 C -0.132 4.132 16 C -0.129 4.129 17 C -0.158 4.158 18 C 0.040 3.960 19 N -0.314 5.314 20 C 0.293 3.707 21 C -0.228 4.228 22 O -0.403 6.403 23 C -0.145 4.145 24 H 0.200 0.800 25 H 0.119 0.881 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.140 0.860 33 H 0.241 0.759 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.581 -6.455 11.645 14.080 hybrid contribution -0.252 0.469 -0.760 0.928 sum -4.833 -5.986 10.885 13.330 Atomic orbital electron populations 1.24023 0.95122 1.06197 1.06168 1.24172 0.95102 0.95067 0.95305 1.17924 0.82890 0.87301 0.97749 1.44397 1.73596 1.12241 0.99066 1.19257 1.25643 0.97438 0.96577 0.90545 1.24960 0.96564 0.98916 0.99182 1.70112 1.23308 1.43753 1.15865 0.86263 0.78958 0.81037 0.80359 1.21391 1.21929 1.20499 1.20054 0.91737 0.98511 0.84648 1.20855 0.98972 0.93171 0.93779 1.20949 0.97534 0.95791 0.98960 1.20900 0.93564 0.98570 0.99849 1.20850 0.99566 0.92133 1.03201 1.17632 0.88606 0.89783 0.99975 1.43595 1.05241 1.12489 1.70038 1.20897 0.83504 0.89249 0.77045 1.21840 0.97855 0.98722 1.04392 1.90754 1.82647 1.21482 1.45462 1.20573 0.93429 0.99864 1.00676 0.79995 0.88087 0.94838 0.93502 0.92169 0.93211 0.86545 0.86810 0.85983 0.75888 0.90532 0.88702 0.88623 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.00 18.91 29.55 0.56 -6.45 16 2 C -0.09 -2.27 10.29 -37.12 -0.38 -2.66 16 3 C 0.27 6.23 5.44 -6.83 -0.04 6.19 16 4 N -0.57 -13.67 2.50 -177.94 -0.44 -14.11 16 5 C -0.26 -6.83 9.68 -15.06 -0.15 -6.97 16 6 H 0.08 1.96 7.88 -52.49 -0.41 1.55 16 7 C 0.00 0.09 4.93 -17.43 -0.09 0.00 16 8 N -0.89 -25.36 9.37 55.49 0.52 -24.84 16 9 Si 0.90 21.57 29.60 -169.99 -5.03 16.53 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.18 3.49 5.82 -5.19 -0.03 3.46 16 14 C -0.06 -1.26 5.20 -104.65 -0.54 -1.80 16 15 C -0.11 -2.21 9.70 -39.55 -0.38 -2.60 16 16 C -0.11 -2.04 10.04 -39.61 -0.40 -2.43 16 17 C -0.14 -2.55 8.66 -39.39 -0.34 -2.89 16 18 C 0.13 2.34 6.31 -83.70 -0.53 1.82 16 19 N -0.67 -9.21 5.35 -9.86 -0.05 -9.26 16 20 C 0.51 7.13 7.69 -10.98 -0.08 7.05 16 21 C -0.17 -1.41 10.39 36.01 0.37 -1.04 16 22 O -0.53 -10.05 14.70 5.55 0.08 -9.97 16 23 C -0.12 -2.28 8.15 -39.40 -0.32 -2.60 16 24 H 0.18 3.92 7.80 -54.08 -0.42 3.50 16 25 H 0.10 2.59 6.30 -51.92 -0.33 2.27 16 26 H 0.03 0.68 7.99 -51.93 -0.41 0.26 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.06 1.13 7.97 -51.93 -0.41 0.71 16 29 H 0.05 0.86 7.90 -51.93 -0.41 0.45 16 30 H 0.12 2.21 8.06 -52.48 -0.42 1.79 16 31 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 32 H 0.12 2.26 6.31 -52.48 -0.33 1.93 16 33 H 0.41 4.03 8.66 -40.82 -0.35 3.68 16 34 H 0.08 0.43 7.92 -51.93 -0.41 0.01 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.11 1.95 8.04 -52.49 -0.42 1.53 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -33.30 321.51 -7.17 -40.48 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -4.75 Total: 7.24 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -2.35 Total: -10.92 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.02 Total: -48.21 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.30 -7.17 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281276455.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.607 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds