Wall clock time and date at job start Mon Mar 30 2020 01:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47639 * 43.40984 * 3 2 1 5 5 C 1.36931 * 120.00076 * 263.92308 * 4 3 2 6 6 H 1.08002 * 120.00335 * 201.60046 * 5 4 3 7 7 C 1.38817 * 120.00129 * 21.59811 * 5 4 3 8 8 N 1.31611 * 119.99963 * 10.87690 * 7 5 4 9 9 Si 1.86798 * 120.00105 * 190.87589 * 7 5 4 10 10 H 1.48506 * 109.46943 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46994 * 119.99996 * 9 7 5 12 12 H 1.48499 * 109.47204 * 240.00513 * 9 7 5 13 13 C 1.46497 * 119.99722 * 83.91719 * 4 3 2 14 14 C 1.50698 * 109.47534 * 270.00430 * 13 4 3 15 15 O 1.21285 * 119.99783 * 359.97438 * 14 13 4 16 16 N 1.34773 * 120.00295 * 180.02562 * 14 13 4 17 17 C 1.46505 * 120.00022 * 5.29315 * 16 14 13 18 18 C 1.39924 * 120.00249 * 185.30277 * 16 14 13 19 19 C 1.38876 * 120.06606 * 291.27213 * 18 16 14 20 20 C 1.38110 * 119.92869 * 179.97438 * 19 18 16 21 21 C 1.38289 * 120.06921 * 359.97031 * 20 19 18 22 22 C 1.38277 * 120.14081 * 0.28564 * 21 20 19 23 23 C 1.38120 * 120.07108 * 359.48059 * 22 21 20 24 24 H 4.40645 * 5.51481 * 180.02562 * 4 1 2 25 25 H 1.09007 * 109.46776 * 283.40664 * 3 2 1 26 26 H 1.09001 * 109.46948 * 163.41079 * 3 2 1 27 27 H 0.96995 * 120.00386 * 179.97438 * 8 7 5 28 28 H 1.09005 * 109.46818 * 150.00356 * 13 4 3 29 29 H 1.08998 * 109.47199 * 30.00531 * 13 4 3 30 30 H 1.08993 * 109.47523 * 270.00547 * 17 16 14 31 31 H 1.09000 * 109.46479 * 30.00549 * 17 16 14 32 32 H 1.08998 * 109.46823 * 150.00048 * 17 16 14 33 33 H 1.07994 * 120.03752 * 359.97438 * 19 18 16 34 34 H 1.07994 * 119.96774 * 180.02562 * 20 19 18 35 35 H 1.08003 * 119.92627 * 180.02562 * 21 20 19 36 36 H 1.07994 * 119.96552 * 179.72370 * 22 21 20 37 37 H 1.08000 * 120.03158 * 180.25460 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0025 -0.9491 5 6 3.4820 -2.2512 -0.5073 6 1 4.1495 -2.8653 -1.0937 7 6 2.9761 -2.7279 0.6943 8 7 2.0046 -2.0808 1.3021 9 14 3.6743 -4.2877 1.4485 10 1 4.7511 -4.8205 0.5756 11 1 4.2316 -3.9821 2.7906 12 1 2.5959 -5.3001 1.5790 13 6 3.2522 -0.6696 -2.3710 14 6 1.9606 -1.0016 -3.0729 15 8 1.0335 -1.4706 -2.4472 16 7 1.8361 -0.7784 -4.3962 17 6 2.9909 -0.3227 -5.1741 18 6 0.6038 -0.9816 -5.0271 19 6 0.0968 -2.2670 -5.1660 20 6 -1.1200 -2.4643 -5.7887 21 6 -1.8337 -1.3834 -6.2732 22 6 -1.3292 -0.1027 -6.1411 23 6 -0.1151 0.1017 -5.5150 24 1 -1.0499 -0.0001 -0.0004 25 1 3.0094 -0.2375 0.9997 26 1 3.0088 0.9857 -0.2934 27 1 1.6508 -2.4140 2.1415 28 1 4.0647 -1.2462 -2.8132 29 1 3.4612 0.3947 -2.4789 30 1 3.0194 0.7668 -5.1779 31 1 3.9062 -0.7086 -4.7253 32 1 2.9063 -0.6876 -6.1977 33 1 0.6535 -3.1115 -4.7875 34 1 -1.5150 -3.4636 -5.8967 35 1 -2.7853 -1.5403 -6.7594 36 1 -1.8868 0.7389 -6.5244 37 1 0.2764 1.1026 -5.4086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281427510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:31 Heat of formation + Delta-G solvation = 97.752693 kcal Electronic energy + Delta-G solvation = -20781.483517 eV Core-core repulsion = 17720.445669 eV Total energy + Delta-G solvation = -3061.037848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.91074 -38.03243 -35.71736 -34.72064 -31.43318 -31.24406 -30.75812 -29.94533 -27.07370 -26.25206 -25.83147 -22.90053 -22.36599 -21.31201 -18.94894 -17.37976 -17.01574 -16.49515 -15.93444 -15.78976 -15.42385 -14.92959 -14.11379 -14.09828 -13.50815 -13.32848 -13.21123 -13.05374 -12.50661 -12.39684 -12.31368 -12.15328 -11.41939 -11.32182 -11.27154 -11.03889 -10.85834 -10.71064 -10.21030 -10.02726 -9.12503 -8.91808 -8.80967 -8.76294 -8.55950 -8.20667 -8.01597 -6.93467 -5.71920 -3.22743 1.47565 1.56720 3.35580 3.44199 3.46211 3.48138 3.53134 3.93777 4.35933 4.57138 4.71478 5.07072 5.08748 5.21734 5.26092 5.40195 5.51750 5.57442 5.63551 5.70154 5.76041 5.79526 5.83099 6.03376 6.11199 6.17837 6.24700 6.49080 6.64514 6.73329 6.78934 6.88464 7.34585 7.41821 7.63204 7.74250 7.89934 8.32318 9.06808 9.16292 9.49703 9.76158 10.21149 11.29614 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.005492 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.495715 B = 5097.049237 C = 5144.440359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.091 4.091 3 C 0.271 3.729 4 N -0.559 5.559 5 C -0.265 4.265 6 H 0.074 0.926 7 C 0.010 3.990 8 N -0.883 5.883 9 Si 0.907 3.093 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.291 1.291 13 C 0.132 3.868 14 C 0.468 3.532 15 O -0.477 6.477 16 N -0.600 5.600 17 C 0.088 3.912 18 C 0.158 3.842 19 C -0.106 4.106 20 C -0.112 4.112 21 C -0.131 4.131 22 C -0.115 4.115 23 C -0.127 4.127 24 H 0.182 0.818 25 H 0.104 0.896 26 H 0.031 0.969 27 H 0.254 0.746 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.234 5.218 -14.612 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.093 4.093 3 C 0.147 3.853 4 N -0.277 5.277 5 C -0.395 4.395 6 H 0.092 0.908 7 C -0.190 4.190 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.218 1.218 13 C 0.000 4.000 14 C 0.254 3.746 15 O -0.345 6.345 16 N -0.337 5.337 17 C -0.055 4.055 18 C 0.066 3.934 19 C -0.126 4.126 20 C -0.131 4.131 21 C -0.150 4.150 22 C -0.134 4.134 23 C -0.146 4.146 24 H 0.200 0.800 25 H 0.121 0.879 26 H 0.049 0.951 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.714 4.888 -13.955 14.803 hybrid contribution -0.377 -1.076 0.280 1.174 sum -1.091 3.811 -13.675 14.238 Atomic orbital electron populations 1.23931 0.95122 1.06821 1.05359 1.23891 0.94964 0.94591 0.95882 1.17905 0.83193 0.88412 0.95828 1.44158 1.72788 1.11920 0.98790 1.19210 1.22237 0.93383 1.04630 0.90789 1.25107 0.96200 0.98051 0.99626 1.70047 1.25137 1.39610 1.17714 0.86158 0.78157 0.83013 0.78969 1.20298 1.21489 1.21778 1.21151 0.92651 0.99440 0.86709 1.23762 0.93409 0.77821 0.79618 1.90781 1.40714 1.39207 1.63809 1.46278 1.08195 1.70279 1.08926 1.21699 0.88456 0.99317 0.95980 1.17729 0.87893 0.92464 0.95265 1.21328 0.96641 0.96656 0.97989 1.21017 0.94666 0.98944 0.98469 1.21079 0.99841 0.92833 1.01222 1.20949 0.95653 0.97031 0.99761 1.21240 0.95048 0.98217 1.00143 0.80027 0.87851 0.95141 0.93513 0.90439 0.91227 0.93055 0.90486 0.91828 0.86125 0.86134 0.86341 0.86176 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -7.59 18.77 29.55 0.55 -7.04 16 2 C -0.09 -2.39 9.93 -37.13 -0.37 -2.76 16 3 C 0.27 6.66 5.44 -6.83 -0.04 6.62 16 4 N -0.56 -13.84 2.09 -177.95 -0.37 -14.21 16 5 C -0.27 -7.19 9.69 -15.06 -0.15 -7.33 16 6 H 0.07 1.94 7.84 -52.49 -0.41 1.53 16 7 C 0.01 0.28 5.10 -17.43 -0.09 0.20 16 8 N -0.88 -25.94 9.05 55.49 0.50 -25.44 16 9 Si 0.91 21.97 29.57 -169.99 -5.03 16.94 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 C 0.13 2.63 4.86 -5.20 -0.03 2.61 16 14 C 0.47 9.96 7.53 -10.99 -0.08 9.88 16 15 O -0.48 -12.73 14.03 5.55 0.08 -12.65 16 16 N -0.60 -10.12 2.92 -120.83 -0.35 -10.48 16 17 C 0.09 1.03 10.13 59.85 0.61 1.63 16 18 C 0.16 2.65 4.77 -83.69 -0.40 2.25 16 19 C -0.11 -1.79 9.40 -39.39 -0.37 -2.16 16 20 C -0.11 -1.59 10.04 -39.61 -0.40 -1.99 16 21 C -0.13 -1.67 10.04 -39.55 -0.40 -2.06 16 22 C -0.12 -1.48 10.04 -39.61 -0.40 -1.87 16 23 C -0.13 -1.85 9.88 -39.39 -0.39 -2.24 16 24 H 0.18 4.19 7.80 -54.10 -0.42 3.77 16 25 H 0.10 2.73 6.39 -51.93 -0.33 2.39 16 26 H 0.03 0.64 7.98 -51.93 -0.41 0.23 16 27 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.08 1.38 7.13 -51.93 -0.37 1.00 16 29 H 0.07 1.18 7.95 -51.93 -0.41 0.76 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.81 6.48 -51.93 -0.34 0.48 16 32 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 33 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 320.95 15.07 4.84 4.84 Total: -1.00 -34.81 320.95 -7.06 -41.87 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.79 Total: 3.39 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.94 Total: -4.26 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -0.22 Total: -50.12 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.08 Total: -12.65 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.81 -7.06 -41.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281427510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.623 kcal (2) G-P(sol) polarization free energy of solvation -34.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds