Wall clock time and date at job start Mon Mar 30 2020 01:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47639 * 43.40984 * 3 2 1 5 5 C 1.36931 * 120.00076 * 263.92308 * 4 3 2 6 6 H 1.08002 * 120.00335 * 201.60046 * 5 4 3 7 7 C 1.38817 * 120.00129 * 21.59811 * 5 4 3 8 8 N 1.31611 * 119.99963 * 10.87690 * 7 5 4 9 9 Si 1.86798 * 120.00105 * 190.87589 * 7 5 4 10 10 H 1.48506 * 109.46943 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46994 * 119.99996 * 9 7 5 12 12 H 1.48499 * 109.47204 * 240.00513 * 9 7 5 13 13 C 1.46497 * 119.99722 * 83.91719 * 4 3 2 14 14 C 1.50698 * 109.47534 * 270.00430 * 13 4 3 15 15 O 1.21285 * 119.99783 * 359.97438 * 14 13 4 16 16 N 1.34773 * 120.00295 * 180.02562 * 14 13 4 17 17 C 1.46505 * 120.00022 * 5.29315 * 16 14 13 18 18 C 1.39924 * 120.00249 * 185.30277 * 16 14 13 19 19 C 1.38876 * 120.06606 * 291.27213 * 18 16 14 20 20 C 1.38110 * 119.92869 * 179.97438 * 19 18 16 21 21 C 1.38289 * 120.06921 * 359.97031 * 20 19 18 22 22 C 1.38277 * 120.14081 * 0.28564 * 21 20 19 23 23 C 1.38120 * 120.07108 * 359.48059 * 22 21 20 24 24 H 4.40645 * 5.51481 * 180.02562 * 4 1 2 25 25 H 1.09007 * 109.46776 * 283.40664 * 3 2 1 26 26 H 1.09001 * 109.46948 * 163.41079 * 3 2 1 27 27 H 0.96995 * 120.00386 * 179.97438 * 8 7 5 28 28 H 1.09005 * 109.46818 * 150.00356 * 13 4 3 29 29 H 1.08998 * 109.47199 * 30.00531 * 13 4 3 30 30 H 1.08993 * 109.47523 * 270.00547 * 17 16 14 31 31 H 1.09000 * 109.46479 * 30.00549 * 17 16 14 32 32 H 1.08998 * 109.46823 * 150.00048 * 17 16 14 33 33 H 1.07994 * 120.03752 * 359.97438 * 19 18 16 34 34 H 1.07994 * 119.96774 * 180.02562 * 20 19 18 35 35 H 1.08003 * 119.92627 * 180.02562 * 21 20 19 36 36 H 1.07994 * 119.96552 * 179.72370 * 22 21 20 37 37 H 1.08000 * 120.03158 * 180.25460 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.0025 -0.9491 5 6 3.4820 -2.2512 -0.5073 6 1 4.1495 -2.8653 -1.0937 7 6 2.9761 -2.7279 0.6943 8 7 2.0046 -2.0808 1.3021 9 14 3.6743 -4.2877 1.4485 10 1 4.7511 -4.8205 0.5756 11 1 4.2316 -3.9821 2.7906 12 1 2.5959 -5.3001 1.5790 13 6 3.2522 -0.6696 -2.3710 14 6 1.9606 -1.0016 -3.0729 15 8 1.0335 -1.4706 -2.4472 16 7 1.8361 -0.7784 -4.3962 17 6 2.9909 -0.3227 -5.1741 18 6 0.6038 -0.9816 -5.0271 19 6 0.0968 -2.2670 -5.1660 20 6 -1.1200 -2.4643 -5.7887 21 6 -1.8337 -1.3834 -6.2732 22 6 -1.3292 -0.1027 -6.1411 23 6 -0.1151 0.1017 -5.5150 24 1 -1.0499 -0.0001 -0.0004 25 1 3.0094 -0.2375 0.9997 26 1 3.0088 0.9857 -0.2934 27 1 1.6508 -2.4140 2.1415 28 1 4.0647 -1.2462 -2.8132 29 1 3.4612 0.3947 -2.4789 30 1 3.0194 0.7668 -5.1779 31 1 3.9062 -0.7086 -4.7253 32 1 2.9063 -0.6876 -6.1977 33 1 0.6535 -3.1115 -4.7875 34 1 -1.5150 -3.4636 -5.8967 35 1 -2.7853 -1.5403 -6.7594 36 1 -1.8868 0.7389 -6.5244 37 1 0.2764 1.1026 -5.4086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281427510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:31 Heat of formation + Delta-G solvation = 77.251112 kcal Electronic energy + Delta-G solvation = -20782.372532 eV Core-core repulsion = 17720.445669 eV Total energy + Delta-G solvation = -3061.926863 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25207 -39.39350 -37.48432 -36.19795 -33.43172 -33.10473 -31.85481 -31.21252 -28.71947 -27.86920 -27.33845 -24.50213 -23.49937 -22.81905 -20.34113 -19.34700 -18.48542 -18.08300 -17.52245 -17.12150 -16.73611 -16.65333 -15.64755 -15.54456 -15.08405 -14.91367 -14.69017 -14.33212 -14.01007 -13.78252 -13.50781 -13.33327 -13.22832 -13.03050 -12.78438 -12.51618 -12.40387 -12.22361 -12.10994 -11.93462 -10.98367 -10.71706 -10.55289 -10.19461 -10.08386 -9.87727 -9.28436 -8.87810 -7.79376 -5.30487 0.35695 0.45621 1.45285 1.47335 1.56651 1.95946 2.15627 2.42130 2.57407 2.69882 2.83369 3.36373 3.81214 3.99432 4.05365 4.11267 4.19244 4.24356 4.35996 4.53140 4.56338 4.59926 4.66648 4.75809 4.80737 4.93827 4.95631 5.08740 5.37225 5.43519 5.56702 5.57500 5.62591 5.71950 5.78823 6.20200 6.29613 6.53514 7.10146 7.50338 7.54511 7.82164 8.21226 9.20807 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.005492 C = 0.005441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.495715 B = 5097.049237 C = 5144.440359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 C -0.104 4.104 3 C 0.270 3.730 4 N -0.574 5.574 5 C -0.264 4.264 6 H 0.080 0.920 7 C -0.047 4.047 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.262 1.262 11 H -0.286 1.286 12 H -0.307 1.307 13 C 0.130 3.870 14 C 0.467 3.533 15 O -0.543 6.543 16 N -0.593 5.593 17 C 0.079 3.921 18 C 0.129 3.871 19 C -0.136 4.136 20 C -0.119 4.119 21 C -0.127 4.127 22 C -0.111 4.111 23 C -0.134 4.134 24 H 0.199 0.801 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.243 0.757 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.137 0.863 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 6.332 -17.029 18.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.333 4.333 2 C -0.106 4.106 3 C 0.145 3.855 4 N -0.292 5.292 5 C -0.394 4.394 6 H 0.097 0.903 7 C -0.243 4.243 8 N -0.559 5.559 9 Si 0.796 3.204 10 H -0.186 1.186 11 H -0.212 1.212 12 H -0.235 1.235 13 C 0.000 4.000 14 C 0.254 3.746 15 O -0.417 6.417 16 N -0.327 5.327 17 C -0.062 4.062 18 C 0.038 3.962 19 C -0.156 4.156 20 C -0.138 4.138 21 C -0.145 4.145 22 C -0.129 4.129 23 C -0.154 4.154 24 H 0.216 0.784 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.155 0.845 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.355 6.029 -16.468 17.540 hybrid contribution -0.494 -1.370 0.816 1.669 sum -0.849 4.659 -15.652 16.352 Atomic orbital electron populations 1.24543 0.96109 1.07163 1.05520 1.24521 0.95946 0.94400 0.95777 1.17953 0.82285 0.90134 0.95113 1.44242 1.72825 1.11161 1.00977 1.19537 1.21441 0.94081 1.04348 0.90273 1.25806 0.96988 1.00932 1.00613 1.70240 1.26889 1.41066 1.17716 0.85216 0.77267 0.79492 0.78444 1.18616 1.21220 1.23548 1.21374 0.92509 1.01960 0.84199 1.23684 0.92873 0.77069 0.80969 1.90757 1.42673 1.42520 1.65759 1.46085 1.09781 1.68807 1.07986 1.22044 0.86911 1.00944 0.96267 1.17973 0.88421 0.93201 0.96583 1.21333 0.98093 0.96228 0.99934 1.21295 0.93856 1.00660 0.97958 1.21510 1.00698 0.92228 1.00048 1.21400 0.94899 0.98291 0.98306 1.21448 0.95672 0.98077 1.00167 0.78364 0.90278 0.91345 0.94694 0.88123 0.87629 0.90587 0.89281 0.90182 0.88724 0.84470 0.82893 0.82716 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -16.59 18.77 74.32 1.40 -15.20 16 2 C -0.10 -5.55 9.93 31.12 0.31 -5.24 16 3 C 0.27 13.24 5.44 84.57 0.46 13.70 16 4 N -0.57 -28.12 2.09 -716.92 -1.50 -29.61 16 5 C -0.26 -14.31 9.69 84.04 0.81 -13.50 16 6 H 0.08 4.10 7.84 -2.91 -0.02 4.08 16 7 C -0.05 -2.68 5.10 84.86 0.43 -2.25 16 8 N -0.91 -55.35 9.05 21.65 0.20 -55.15 16 9 Si 0.97 46.06 29.57 68.60 2.03 48.09 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.31 -15.34 7.11 99.48 0.71 -14.64 16 13 C 0.13 4.93 4.86 85.63 0.42 5.34 16 14 C 0.47 19.65 7.53 87.66 0.66 20.31 16 15 O -0.54 -29.63 14.03 -3.05 -0.04 -29.68 16 16 N -0.59 -19.27 2.92 -654.57 -1.91 -21.19 16 17 C 0.08 1.62 10.13 127.77 1.29 2.92 16 18 C 0.13 4.25 4.77 38.15 0.18 4.43 16 19 C -0.14 -4.63 9.40 22.39 0.21 -4.42 16 20 C -0.12 -3.25 10.04 22.25 0.22 -3.03 16 21 C -0.13 -2.84 10.04 22.29 0.22 -2.62 16 22 C -0.11 -2.47 10.04 22.25 0.22 -2.25 16 23 C -0.13 -3.64 9.88 22.39 0.22 -3.42 16 24 H 0.20 9.31 7.80 -4.42 -0.03 9.28 16 25 H 0.08 4.26 6.39 -2.38 -0.02 4.24 16 26 H 0.07 2.77 7.98 -2.39 -0.02 2.75 16 27 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.10 3.32 7.13 -2.38 -0.02 3.30 16 29 H 0.11 3.22 7.95 -2.39 -0.02 3.20 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.61 6.48 -2.39 -0.02 1.59 16 32 H 0.08 1.40 8.05 -2.39 -0.02 1.38 16 33 H 0.09 3.58 8.06 -2.91 -0.02 3.56 16 34 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 35 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 36 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -78.48 320.95 6.89 -71.59 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 1.05 Total: 21.15 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 7.06 Total: -5.20 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -3.21 Total: -105.95 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.04 Total: -29.68 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -78.48 6.89 -71.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281427510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.844 kcal (2) G-P(sol) polarization free energy of solvation -78.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds