Wall clock time and date at job start Mon Mar 30 2020 02:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35703 * 117.00384 * 2 1 4 4 C 1.38649 * 120.14463 * 359.97438 * 3 2 1 5 5 C 1.38105 * 120.08735 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.80192 * 179.97438 * 5 4 3 7 7 N 1.46505 * 109.47222 * 270.02224 * 6 5 4 8 8 C 1.36942 * 119.99847 * 89.99854 * 7 6 5 9 9 H 1.08000 * 120.00304 * 304.47498 * 8 7 6 10 10 C 1.38815 * 120.00053 * 124.47167 * 8 7 6 11 11 N 1.31617 * 120.00089 * 164.67583 * 10 8 7 12 12 Si 1.86801 * 119.99844 * 344.67338 * 10 8 7 13 13 H 1.48504 * 109.46879 * 91.90243 * 12 10 8 14 14 H 1.48498 * 109.47123 * 211.90216 * 12 10 8 15 15 H 1.48501 * 109.47319 * 331.90426 * 12 10 8 16 16 C 1.46491 * 120.00371 * 270.00130 * 7 6 5 17 17 C 1.53003 * 117.50248 * 183.06983 * 16 7 6 18 18 C 1.53001 * 117.49964 * 114.40821 * 16 7 6 19 19 C 1.38519 * 120.39737 * 0.02562 * 5 4 3 20 20 C 1.37822 * 120.29088 * 359.97438 * 19 5 4 21 21 C 1.39713 * 119.90541 * 0.28136 * 20 19 5 22 22 C 1.43202 * 120.19589 * 179.70560 * 21 20 19 23 23 N 3.53317 * 165.92039 * 181.12804 * 2 1 3 24 24 H 1.09004 * 109.47481 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47351 * 300.00491 * 1 2 3 26 26 H 1.09007 * 109.46874 * 60.00096 * 1 2 3 27 27 H 1.07999 * 119.95787 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.47450 * 30.02314 * 6 5 4 29 29 H 1.09001 * 109.47250 * 150.02786 * 6 5 4 30 30 H 0.96997 * 120.00195 * 180.02562 * 11 10 8 31 31 H 1.09001 * 115.54947 * 328.73880 * 16 7 6 32 32 H 1.09002 * 117.49798 * 359.97438 * 17 16 7 33 33 H 1.08997 * 117.50364 * 145.02019 * 17 16 7 34 34 H 1.09003 * 117.49668 * 214.98280 * 18 16 7 35 35 H 1.08993 * 117.50107 * 359.97438 * 18 16 7 36 36 H 1.07993 * 119.85336 * 179.97438 * 19 5 4 37 37 H 1.08000 * 120.04864 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2930 2.3738 -0.0005 5 6 1.9213 3.6037 0.0000 6 6 1.0975 4.8656 -0.0012 7 7 0.8317 5.2740 -1.3828 8 6 -0.2856 4.8166 -2.0291 9 1 -0.4671 3.7549 -2.1082 10 6 -1.1850 5.7175 -2.5826 11 7 -2.0830 5.3019 -3.4505 12 14 -1.1209 7.5198 -2.0955 13 1 -0.2446 8.2571 -3.0409 14 1 -2.4899 8.0934 -2.1395 15 1 -0.5771 7.6416 -0.7190 16 6 1.7611 6.1717 -2.0730 17 6 1.3915 6.6188 -3.4888 18 6 2.5236 5.6109 -3.2751 19 6 3.3041 3.6843 0.0005 20 6 4.0674 2.5367 0.0011 21 6 3.4447 1.2860 -0.0049 22 6 4.2317 0.0897 -0.0107 23 7 4.8560 -0.8593 -0.0169 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 0.2144 2.3193 -0.0014 28 1 0.1532 4.6836 0.5119 29 1 1.6437 5.6566 0.5127 30 1 -2.7112 5.9315 -3.8375 31 1 2.2803 6.8896 -1.4380 32 1 0.4570 6.2446 -3.9069 33 1 1.6679 7.6306 -3.7854 34 1 3.5444 5.9601 -3.4311 35 1 2.3341 4.5739 -3.5521 36 1 3.7863 4.6506 0.0005 37 1 5.1453 2.6041 0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282232562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:08 Heat of formation + Delta-G solvation = 71.241006 kcal Electronic energy + Delta-G solvation = -20590.528356 eV Core-core repulsion = 17528.340875 eV Total energy + Delta-G solvation = -3062.187481 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.16969 -37.87774 -37.08511 -36.14764 -33.45147 -32.22508 -30.50777 -30.06853 -27.40818 -26.25390 -23.86582 -22.20370 -21.66487 -21.58519 -19.84947 -18.99619 -17.27007 -16.74011 -16.15126 -15.73391 -15.29183 -14.76466 -14.38039 -14.17251 -14.00659 -13.64665 -13.57809 -13.24023 -12.72204 -12.61717 -12.30443 -12.05763 -11.86120 -11.84470 -11.45867 -11.13646 -10.96362 -10.81624 -10.76676 -10.50755 -10.40848 -9.89039 -9.58137 -9.21078 -8.71607 -8.45906 -8.05866 -6.60637 -6.12586 -3.83827 1.03862 1.60286 2.89526 3.19166 3.26689 3.32062 3.41730 3.47305 4.04406 4.14783 4.43086 4.80923 4.88591 4.97232 5.06286 5.22023 5.29256 5.34705 5.38674 5.51678 5.64389 5.71108 5.79512 5.90059 6.02166 6.04185 6.12123 6.38647 6.41557 6.46770 6.49408 6.53560 6.83407 6.95344 6.99197 7.25687 7.37771 7.73681 7.98234 8.38493 8.86703 9.51351 9.99124 10.96592 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023012 B = 0.005756 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.484076 B = 4863.116550 C = 5480.373647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.318 6.318 3 C 0.172 3.828 4 C -0.190 4.190 5 C -0.006 4.006 6 C 0.173 3.827 7 N -0.563 5.563 8 C -0.288 4.288 9 H 0.070 0.930 10 C 0.060 3.940 11 N -0.895 5.895 12 Si 0.885 3.115 13 H -0.269 1.269 14 H -0.304 1.304 15 H -0.270 1.270 16 C 0.108 3.892 17 C -0.198 4.198 18 C -0.209 4.209 19 C -0.148 4.148 20 C -0.038 4.038 21 C -0.087 4.087 22 C 0.276 3.724 23 N -0.443 5.443 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.140 0.860 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.266 0.734 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.129 0.871 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.302 -1.202 7.487 9.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.230 6.230 3 C 0.124 3.876 4 C -0.209 4.209 5 C -0.010 4.010 6 C 0.048 3.952 7 N -0.282 5.282 8 C -0.416 4.416 9 H 0.088 0.912 10 C -0.144 4.144 11 N -0.533 5.533 12 Si 0.713 3.287 13 H -0.195 1.195 14 H -0.232 1.232 15 H -0.194 1.194 16 C 0.001 3.999 17 C -0.236 4.236 18 C -0.250 4.250 19 C -0.167 4.167 20 C -0.059 4.059 21 C -0.092 4.092 22 C -0.038 4.038 23 N -0.120 5.120 24 H 0.116 0.884 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.158 0.842 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.147 0.853 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.131 -2.820 7.377 10.640 hybrid contribution -0.567 1.411 -0.141 1.527 sum 6.564 -1.409 7.236 9.871 Atomic orbital electron populations 1.23156 0.77419 1.03935 1.02469 1.86007 1.22229 1.26840 1.87914 1.18953 0.90272 0.84859 0.93533 1.21161 1.00729 0.90893 1.08122 1.21102 0.94228 0.96809 0.88874 1.20117 0.97118 0.90467 0.87536 1.43493 1.22599 1.53926 1.08188 1.18501 0.97157 0.92566 1.33412 0.91234 1.25842 0.94278 0.98737 0.95507 1.69856 1.20151 1.35745 1.27525 0.86793 0.75949 0.85871 0.80051 1.19515 1.23233 1.19441 1.21333 0.95555 0.95741 0.87319 1.23517 1.01498 0.97613 1.00944 1.23338 0.94599 0.99282 1.07745 1.20856 0.93348 0.97966 1.04528 1.20886 0.99692 0.89795 0.95481 1.15207 0.88123 0.88336 1.17527 1.25476 0.92855 0.92658 0.92814 1.81151 1.09803 1.10275 1.10757 0.88359 0.92172 0.91514 0.84239 0.91037 0.92803 0.92406 0.89393 0.86273 0.90719 0.91059 0.89286 0.85328 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.70 9.93 -18.81 -0.19 -4.88 16 3 C 0.17 2.61 6.69 -38.70 -0.26 2.35 16 4 C -0.19 -2.90 8.67 -39.48 -0.34 -3.24 16 5 C -0.01 -0.10 5.47 -104.57 -0.57 -0.67 16 6 C 0.17 2.94 5.83 -5.19 -0.03 2.91 16 7 N -0.56 -11.69 2.03 -167.02 -0.34 -12.03 16 8 C -0.29 -7.14 9.17 -15.06 -0.14 -7.28 16 9 H 0.07 1.91 8.06 -52.49 -0.42 1.49 16 10 C 0.06 1.55 3.74 -17.43 -0.07 1.49 16 11 N -0.89 -25.07 13.97 55.49 0.78 -24.29 16 12 Si 0.89 20.51 24.88 -169.99 -4.23 16.28 16 13 H -0.27 -6.01 5.80 56.52 0.33 -5.68 16 14 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 C 0.11 2.09 5.16 -67.93 -0.35 1.73 16 17 C -0.20 -4.06 6.69 -26.69 -0.18 -4.24 16 18 C -0.21 -3.89 10.36 -26.69 -0.28 -4.17 16 19 C -0.15 -1.97 9.67 -39.63 -0.38 -2.35 16 20 C -0.04 -0.48 9.75 -39.18 -0.38 -0.86 16 21 C -0.09 -1.27 5.75 -106.69 -0.61 -1.89 16 22 C 0.28 4.35 14.87 -22.47 -0.33 4.02 16 23 N -0.44 -7.63 18.54 41.84 0.78 -6.86 16 24 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16 26 H 0.07 0.81 7.66 -51.92 -0.40 0.42 16 27 H 0.14 2.11 6.30 -52.49 -0.33 1.78 16 28 H 0.07 1.22 7.98 -51.93 -0.41 0.81 16 29 H 0.05 0.80 8.01 -51.93 -0.42 0.38 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.12 2.88 5.08 -51.93 -0.26 2.61 16 33 H 0.07 1.41 7.86 -51.93 -0.41 1.00 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -28.97 316.60 -6.16 -35.14 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.80 Total: 2.81 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -2.93 Total: -10.94 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 1.21 Total: -43.18 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.19 Total: -4.88 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.23 Total: 16.28 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.97 -6.16 -35.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282232562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.379 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds