Wall clock time and date at job start Mon Mar 30 2020 02:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35703 * 117.00384 * 2 1 4 4 C 1.38649 * 120.14463 * 359.97438 * 3 2 1 5 5 C 1.38105 * 120.08735 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.80192 * 179.97438 * 5 4 3 7 7 N 1.46505 * 109.47222 * 270.02224 * 6 5 4 8 8 C 1.36942 * 119.99847 * 89.99854 * 7 6 5 9 9 H 1.08000 * 120.00304 * 304.47498 * 8 7 6 10 10 C 1.38815 * 120.00053 * 124.47167 * 8 7 6 11 11 N 1.31617 * 120.00089 * 164.67583 * 10 8 7 12 12 Si 1.86801 * 119.99844 * 344.67338 * 10 8 7 13 13 H 1.48504 * 109.46879 * 91.90243 * 12 10 8 14 14 H 1.48498 * 109.47123 * 211.90216 * 12 10 8 15 15 H 1.48501 * 109.47319 * 331.90426 * 12 10 8 16 16 C 1.46491 * 120.00371 * 270.00130 * 7 6 5 17 17 C 1.53003 * 117.50248 * 183.06983 * 16 7 6 18 18 C 1.53001 * 117.49964 * 114.40821 * 16 7 6 19 19 C 1.38519 * 120.39737 * 0.02562 * 5 4 3 20 20 C 1.37822 * 120.29088 * 359.97438 * 19 5 4 21 21 C 1.39713 * 119.90541 * 0.28136 * 20 19 5 22 22 C 1.43202 * 120.19589 * 179.70560 * 21 20 19 23 23 N 3.53317 * 165.92039 * 181.12804 * 2 1 3 24 24 H 1.09004 * 109.47481 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47351 * 300.00491 * 1 2 3 26 26 H 1.09007 * 109.46874 * 60.00096 * 1 2 3 27 27 H 1.07999 * 119.95787 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.47450 * 30.02314 * 6 5 4 29 29 H 1.09001 * 109.47250 * 150.02786 * 6 5 4 30 30 H 0.96997 * 120.00195 * 180.02562 * 11 10 8 31 31 H 1.09001 * 115.54947 * 328.73880 * 16 7 6 32 32 H 1.09002 * 117.49798 * 359.97438 * 17 16 7 33 33 H 1.08997 * 117.50364 * 145.02019 * 17 16 7 34 34 H 1.09003 * 117.49668 * 214.98280 * 18 16 7 35 35 H 1.08993 * 117.50107 * 359.97438 * 18 16 7 36 36 H 1.07993 * 119.85336 * 179.97438 * 19 5 4 37 37 H 1.08000 * 120.04864 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2930 2.3738 -0.0005 5 6 1.9213 3.6037 0.0000 6 6 1.0975 4.8656 -0.0012 7 7 0.8317 5.2740 -1.3828 8 6 -0.2856 4.8166 -2.0291 9 1 -0.4671 3.7549 -2.1082 10 6 -1.1850 5.7175 -2.5826 11 7 -2.0830 5.3019 -3.4505 12 14 -1.1209 7.5198 -2.0955 13 1 -0.2446 8.2571 -3.0409 14 1 -2.4899 8.0934 -2.1395 15 1 -0.5771 7.6416 -0.7190 16 6 1.7611 6.1717 -2.0730 17 6 1.3915 6.6188 -3.4888 18 6 2.5236 5.6109 -3.2751 19 6 3.3041 3.6843 0.0005 20 6 4.0674 2.5367 0.0011 21 6 3.4447 1.2860 -0.0049 22 6 4.2317 0.0897 -0.0107 23 7 4.8560 -0.8593 -0.0169 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 0.2144 2.3193 -0.0014 28 1 0.1532 4.6836 0.5119 29 1 1.6437 5.6566 0.5127 30 1 -2.7112 5.9315 -3.8375 31 1 2.2803 6.8896 -1.4380 32 1 0.4570 6.2446 -3.9069 33 1 1.6679 7.6306 -3.7854 34 1 3.5444 5.9601 -3.4311 35 1 2.3341 4.5739 -3.5521 36 1 3.7863 4.6506 0.0005 37 1 5.1453 2.6041 0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282232562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:08 Heat of formation + Delta-G solvation = 55.221408 kcal Electronic energy + Delta-G solvation = -20591.223018 eV Core-core repulsion = 17528.340875 eV Total energy + Delta-G solvation = -3062.882143 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29792 -39.24022 -38.39658 -37.43383 -34.91796 -34.02072 -31.94619 -31.16424 -28.54228 -27.65641 -25.50795 -23.34484 -23.12706 -22.87942 -21.49839 -20.15516 -18.77964 -18.16411 -17.33650 -16.87775 -16.68659 -16.56411 -15.61879 -15.41231 -15.25855 -14.95590 -14.86743 -14.81647 -14.05560 -14.01564 -13.85853 -13.42259 -13.11224 -13.11157 -12.82684 -12.55900 -12.38875 -12.15372 -12.02918 -11.94395 -11.89535 -11.72790 -11.20787 -10.78595 -10.44953 -9.79861 -9.18667 -8.34417 -8.07324 -5.80665 -0.12510 0.51081 1.50037 1.53270 1.64258 1.65544 1.97754 2.23048 2.52880 2.86124 2.96152 3.08699 3.39170 3.50449 3.89007 3.97874 4.24970 4.33328 4.35489 4.36617 4.42060 4.47541 4.57490 4.60735 4.71097 4.75555 4.94617 5.00907 5.08585 5.13895 5.26264 5.35746 5.42487 5.63839 5.74948 5.82510 6.04396 6.25632 6.37258 6.51881 7.16221 7.63632 8.13502 9.01460 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023012 B = 0.005756 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.484076 B = 4863.116550 C = 5480.373647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.334 6.334 3 C 0.163 3.837 4 C -0.202 4.202 5 C -0.017 4.017 6 C 0.171 3.829 7 N -0.575 5.575 8 C -0.268 4.268 9 H 0.026 0.974 10 C 0.013 3.987 11 N -0.947 5.947 12 Si 0.941 3.059 13 H -0.254 1.254 14 H -0.322 1.322 15 H -0.253 1.253 16 C 0.107 3.893 17 C -0.219 4.219 18 C -0.191 4.191 19 C -0.140 4.140 20 C -0.023 4.023 21 C -0.097 4.097 22 C 0.291 3.709 23 N -0.473 5.473 24 H 0.123 0.877 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.129 0.871 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.262 0.738 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.059 0.941 36 H 0.158 0.842 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.014 0.635 8.925 12.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.247 6.247 3 C 0.115 3.885 4 C -0.221 4.221 5 C -0.020 4.020 6 C 0.047 3.953 7 N -0.294 5.294 8 C -0.398 4.398 9 H 0.044 0.956 10 C -0.185 4.185 11 N -0.589 5.589 12 Si 0.768 3.232 13 H -0.178 1.178 14 H -0.251 1.251 15 H -0.177 1.177 16 C 0.001 3.999 17 C -0.257 4.257 18 C -0.231 4.231 19 C -0.159 4.159 20 C -0.043 4.043 21 C -0.101 4.101 22 C -0.023 4.023 23 N -0.150 5.150 24 H 0.141 0.859 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.147 0.853 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.078 0.922 36 H 0.176 0.824 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.880 -0.990 8.845 13.298 hybrid contribution -1.391 0.716 -0.590 1.672 sum 8.490 -0.274 8.255 11.844 Atomic orbital electron populations 1.23328 0.76045 1.05519 1.02300 1.85986 1.23721 1.27006 1.87941 1.19072 0.90713 0.84854 0.93880 1.21143 1.00430 0.91530 1.09021 1.21013 0.95279 0.95759 0.89995 1.20228 0.97595 0.92122 0.85381 1.43588 1.21935 1.54204 1.09705 1.18230 0.98317 0.90681 1.32553 0.95622 1.26409 0.94073 1.02550 0.95496 1.69993 1.22011 1.37014 1.29888 0.85895 0.75234 0.81426 0.80695 1.17835 1.25116 1.17651 1.21658 0.95081 0.95827 0.87357 1.23433 1.00683 0.99122 1.02445 1.23276 0.95906 0.97254 1.06712 1.21117 0.92204 0.99436 1.03135 1.21239 1.01314 0.88499 0.93276 1.15438 0.87766 0.88813 1.18110 1.25620 0.92243 0.92491 0.91942 1.81162 1.10905 1.10989 1.11949 0.85927 0.90970 0.93060 0.85316 0.92110 0.89301 0.92891 0.85363 0.90497 0.88584 0.87212 0.92242 0.82394 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.81 113.37 1.11 1.63 16 2 O -0.33 -9.92 9.93 -90.23 -0.90 -10.81 16 3 C 0.16 4.87 6.69 22.84 0.15 5.02 16 4 C -0.20 -6.15 8.67 22.34 0.19 -5.95 16 5 C -0.02 -0.48 5.47 -19.83 -0.11 -0.59 16 6 C 0.17 5.37 5.83 85.63 0.50 5.87 16 7 N -0.57 -22.85 2.03 -682.33 -1.39 -24.24 16 8 C -0.27 -13.59 9.17 84.03 0.77 -12.82 16 9 H 0.03 1.52 8.06 -2.91 -0.02 1.49 16 10 C 0.01 0.70 3.74 84.86 0.32 1.01 16 11 N -0.95 -55.57 13.97 21.65 0.30 -55.27 16 12 Si 0.94 41.97 24.88 68.60 1.71 43.68 16 13 H -0.25 -10.56 5.80 99.48 0.58 -9.98 16 14 H -0.32 -15.18 7.11 99.48 0.71 -14.47 16 15 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 16 C 0.11 3.75 5.16 44.99 0.23 3.98 16 17 C -0.22 -8.50 6.69 30.62 0.20 -8.29 16 18 C -0.19 -6.53 10.36 30.62 0.32 -6.21 16 19 C -0.14 -3.16 9.67 22.24 0.22 -2.94 16 20 C -0.02 -0.50 9.75 22.53 0.22 -0.28 16 21 C -0.10 -2.64 5.75 -21.21 -0.12 -2.76 16 22 C 0.29 8.76 14.87 88.33 1.31 10.07 16 23 N -0.47 -15.83 18.54 19.00 0.35 -15.48 16 24 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 25 H 0.07 1.48 7.66 -2.39 -0.02 1.46 16 26 H 0.05 1.34 7.66 -2.38 -0.02 1.32 16 27 H 0.13 4.10 6.30 -2.91 -0.02 4.08 16 28 H 0.06 2.01 7.98 -2.39 -0.02 1.99 16 29 H 0.09 2.20 8.01 -2.39 -0.02 2.18 16 30 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 32 H 0.08 3.72 5.08 -2.39 -0.01 3.71 16 33 H 0.10 3.28 7.86 -2.39 -0.02 3.26 16 34 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 37 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -65.39 316.60 6.34 -59.04 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.95 Total: 15.34 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 5.32 Total: -12.26 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -0.73 Total: -94.99 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.90 Total: -10.81 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.71 Total: 43.68 kcal Total: -65.39 6.34 -59.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282232562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.262 kcal (2) G-P(sol) polarization free energy of solvation -65.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds