Wall clock time and date at job start Mon Mar 30 2020 01:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46844 * 2 1 4 4 C 1.52996 * 109.47068 * 239.99538 * 2 1 3 5 5 N 1.46498 * 109.47060 * 65.00359 * 4 2 1 6 6 C 1.36830 * 125.06146 * 265.01716 * 5 4 2 7 7 C 1.34234 * 109.93030 * 180.02562 * 6 5 4 8 8 C 1.46489 * 106.99750 * 0.02562 * 7 6 5 9 9 C 1.39630 * 134.03164 * 179.97438 * 8 7 6 10 10 C 1.36631 * 119.76131 * 179.26969 * 9 8 7 11 11 C 1.38835 * 120.52626 * 0.60313 * 10 9 8 12 12 C 1.37743 * 120.66625 * 359.62845 * 11 10 9 13 13 C 1.37683 * 125.06430 * 84.72334 * 5 4 2 14 14 C 1.50702 * 109.46842 * 119.99698 * 2 1 3 15 15 O 1.21293 * 120.00255 * 120.00228 * 14 2 1 16 16 N 1.34777 * 119.99928 * 299.72137 * 14 2 1 17 17 C 1.37101 * 120.00327 * 180.27606 * 16 14 2 18 18 H 1.08001 * 119.99426 * 0.02562 * 17 16 14 19 19 C 1.38942 * 120.00412 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00005 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00057 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47191 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46534 * 120.00189 * 21 19 17 24 24 H 1.48498 * 109.47283 * 240.00132 * 21 19 17 25 25 H 1.09008 * 109.47534 * 60.00391 * 1 2 3 26 26 H 1.09002 * 109.47575 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47551 * 300.00235 * 1 2 3 28 28 H 1.09009 * 109.46866 * 185.00388 * 4 2 1 29 29 H 1.09003 * 109.47260 * 304.99704 * 4 2 1 30 30 H 1.08003 * 125.03618 * 359.97438 * 6 5 4 31 31 H 1.08004 * 126.50315 * 180.02562 * 7 6 5 32 32 H 1.07999 * 120.11818 * 359.97438 * 9 8 7 33 33 H 1.07998 * 119.73797 * 180.23324 * 10 9 8 34 34 H 1.08000 * 119.66597 * 179.60757 * 11 10 9 35 35 H 1.08006 * 120.10858 * 179.97438 * 12 11 10 36 36 H 0.97000 * 120.00317 * 0.28382 * 16 14 2 37 37 H 0.96996 * 120.00330 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6524 0.0352 -2.4423 6 6 0.5346 -0.2021 -3.1949 7 6 0.4768 0.6680 -4.2154 8 6 1.6542 1.5328 -4.1080 9 6 2.1427 2.6048 -4.8576 10 6 3.2969 3.2288 -4.4765 11 6 3.9950 2.7976 -3.3566 12 6 3.5336 1.7391 -2.6056 13 6 2.3558 1.0946 -2.9702 14 6 2.0322 -0.7104 1.2305 15 8 2.7296 -1.6965 1.1194 16 7 1.7112 -0.2465 2.4546 17 6 2.1728 -0.8894 3.5741 18 1 2.7940 -1.7674 3.4750 19 6 1.8414 -0.4116 4.8360 20 7 1.0852 0.6563 4.9565 21 14 2.4698 -1.2881 6.3613 22 1 3.2943 -2.4552 5.9572 23 1 3.2973 -0.3522 7.1642 24 1 1.3179 -1.7531 7.1749 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 3.1263 -0.7996 -1.2054 29 1 1.6054 -1.7199 -1.2950 30 1 -0.1930 -0.9755 -2.9975 31 1 -0.2920 0.7204 -4.9722 32 1 1.6040 2.9467 -5.7290 33 1 3.6723 4.0603 -5.0545 34 1 4.9092 3.2970 -3.0716 35 1 4.0842 1.4109 -1.7363 36 1 1.1535 0.5421 2.5436 37 1 0.8535 0.9897 5.8374 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286063400.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:11 Heat of formation + Delta-G solvation = -3.592196 kcal Electronic energy + Delta-G solvation = -20133.483897 eV Core-core repulsion = 17068.051405 eV Total energy + Delta-G solvation = -3065.432492 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.28481 -40.42314 -38.02973 -36.18194 -35.41830 -33.41884 -32.53984 -30.60468 -29.73135 -27.25099 -27.17691 -24.36552 -23.30581 -22.32921 -21.11823 -20.67505 -19.93189 -18.34683 -17.34935 -17.20987 -16.82600 -16.34516 -16.19599 -15.99824 -15.51953 -14.92812 -14.80125 -14.43859 -14.41528 -13.82870 -13.73255 -13.53699 -13.34212 -13.04382 -12.96210 -12.73892 -12.48333 -12.44633 -12.18882 -12.14393 -11.94594 -11.69147 -11.58026 -10.60047 -10.36740 -10.09049 -9.06428 -8.54744 -8.50095 -6.02287 0.26537 0.75440 1.33342 1.40103 1.54117 1.81454 1.90371 1.93745 2.27529 3.03731 3.13530 3.15713 3.64667 3.74509 3.81516 4.00367 4.08467 4.17186 4.29268 4.32796 4.44548 4.61043 4.62292 4.67906 4.78049 4.85010 4.91720 5.01336 5.12063 5.15422 5.22263 5.36609 5.61730 5.74254 5.91604 5.92516 5.98747 6.37423 6.42691 6.49336 7.04220 7.46048 7.98897 8.64972 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030713 B = 0.003941 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.441956 B = 7102.830595 C = 7434.366724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 H 0.086 0.914 4 C 0.145 3.855 5 N -0.481 5.481 6 C 0.051 3.949 7 C -0.215 4.215 8 C -0.131 4.131 9 C -0.080 4.080 10 C -0.152 4.152 11 C -0.107 4.107 12 C -0.150 4.150 13 C 0.071 3.929 14 C 0.446 3.554 15 O -0.632 6.632 16 N -0.563 5.563 17 C -0.338 4.338 18 H 0.082 0.918 19 C -0.010 4.010 20 N -0.918 5.918 21 Si 0.994 3.006 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.269 1.269 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.192 0.808 31 H 0.169 0.831 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.109 0.891 36 H 0.396 0.604 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.031 4.578 -16.786 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.126 4.126 3 H 0.104 0.896 4 C 0.023 3.977 5 N -0.164 5.164 6 C -0.074 4.074 7 C -0.239 4.239 8 C -0.136 4.136 9 C -0.099 4.099 10 C -0.171 4.171 11 C -0.126 4.126 12 C -0.171 4.171 13 C -0.035 4.035 14 C 0.233 3.767 15 O -0.521 6.521 16 N -0.198 5.198 17 C -0.467 4.467 18 H 0.100 0.900 19 C -0.210 4.210 20 N -0.558 5.558 21 Si 0.818 3.182 22 H -0.196 1.196 23 H -0.196 1.196 24 H -0.195 1.195 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.209 0.791 31 H 0.187 0.813 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.159 0.841 35 H 0.127 0.873 36 H 0.230 0.770 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.586 3.826 -16.396 16.911 hybrid contribution 0.157 -0.035 1.282 1.292 sum -1.430 3.791 -15.114 15.648 Atomic orbital electron populations 1.21729 0.91437 1.02875 1.03008 1.21341 0.99079 1.00012 0.92133 0.89578 1.21297 1.00901 0.94565 0.80984 1.44142 1.21094 1.27417 1.23706 1.22348 0.90295 1.01937 0.92789 1.21956 1.00173 0.99105 1.02707 1.19639 0.97551 0.99693 0.96744 1.20590 0.96254 0.93784 0.99232 1.20952 0.96246 1.01852 0.98071 1.21103 1.00460 0.95713 0.95293 1.20282 0.95552 0.99113 1.02144 1.18618 0.96196 0.92115 0.96568 1.20463 0.84530 0.86649 0.85075 1.90496 1.44012 1.30354 1.87209 1.41936 1.45702 1.27595 1.04591 1.19765 1.30744 1.11490 0.84721 0.89964 1.26083 0.96435 0.96894 1.01632 1.69680 1.36600 1.23342 1.26221 0.84853 0.78261 0.78096 0.77035 1.19607 1.19607 1.19453 0.90080 0.91798 0.92467 0.90664 0.88095 0.79110 0.81321 0.83937 0.83507 0.84098 0.87310 0.77010 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 8.81 71.98 0.63 -3.32 16 2 C -0.10 -3.61 2.93 -11.54 -0.03 -3.65 16 3 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 4 C 0.14 4.59 4.76 86.38 0.41 5.00 16 5 N -0.48 -13.56 2.52 -515.94 -1.30 -14.86 16 6 C 0.05 1.16 9.88 83.00 0.82 1.98 16 7 C -0.22 -4.81 11.08 23.51 0.26 -4.55 16 8 C -0.13 -3.48 6.37 -20.20 -0.13 -3.61 16 9 C -0.08 -1.78 10.05 22.23 0.22 -1.56 16 10 C -0.15 -3.18 9.97 22.04 0.22 -2.96 16 11 C -0.11 -2.52 10.01 22.30 0.22 -2.30 16 12 C -0.15 -4.33 10.00 22.37 0.22 -4.11 16 13 C 0.07 2.11 6.81 39.03 0.27 2.38 16 14 C 0.45 20.91 7.10 87.66 0.62 21.53 16 15 O -0.63 -33.99 15.50 -3.07 -0.05 -34.04 16 16 N -0.56 -28.79 5.18 -306.98 -1.59 -30.38 16 17 C -0.34 -18.99 9.68 84.04 0.81 -18.18 16 18 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 19 C -0.01 -0.54 5.50 84.92 0.47 -0.07 16 20 N -0.92 -49.22 13.05 21.66 0.28 -48.94 16 21 Si 0.99 42.33 29.55 68.60 2.03 44.36 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 25 H 0.08 2.07 6.72 -2.38 -0.02 2.05 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.80 7.57 -2.39 -0.02 1.78 16 28 H 0.07 2.63 7.96 -2.38 -0.02 2.61 16 29 H 0.10 3.05 8.12 -2.39 -0.02 3.03 16 30 H 0.19 3.16 8.06 -2.91 -0.02 3.13 16 31 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.11 3.22 8.06 -2.91 -0.02 3.20 16 36 H 0.40 19.53 7.33 -92.71 -0.68 18.85 16 37 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -66.28 317.87 4.79 -61.48 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.40 Total: 35.79 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 5.02 Total: -13.41 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -2.61 Total: -94.18 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.05 Total: -34.04 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -66.28 4.79 -61.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286063400.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.892 kcal (2) G-P(sol) polarization free energy of solvation -66.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds