Wall clock time and date at job start Mon Mar 30 2020 01:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.47260 * 2 1 4 4 C 1.52997 * 109.47397 * 119.99328 * 2 1 3 5 5 N 1.46494 * 109.47533 * 295.00365 * 4 2 1 6 6 C 1.36826 * 125.06435 * 265.02389 * 5 4 2 7 7 C 1.34244 * 109.93190 * 179.97438 * 6 5 4 8 8 C 1.46487 * 106.99688 * 0.02562 * 7 6 5 9 9 C 1.39624 * 134.03153 * 180.02562 * 8 7 6 10 10 C 1.36626 * 119.76497 * 179.97438 * 9 8 7 11 11 C 1.38834 * 120.52624 * 359.97438 * 10 9 8 12 12 C 1.37741 * 120.66466 * 0.04449 * 11 10 9 13 13 C 1.37694 * 125.06287 * 85.01824 * 5 4 2 14 14 C 1.50697 * 109.47432 * 239.99989 * 2 1 3 15 15 O 1.21291 * 119.99767 * 240.00261 * 14 2 1 16 16 N 1.34776 * 120.00372 * 59.99649 * 14 2 1 17 17 C 1.37096 * 120.00140 * 180.02562 * 16 14 2 18 18 H 1.07994 * 119.99947 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99751 * 180.02562 * 17 16 14 20 20 N 1.31406 * 120.00041 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00204 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47235 * 90.00133 * 21 19 17 23 23 H 1.48500 * 109.47126 * 210.00415 * 21 19 17 24 24 H 1.48504 * 109.46787 * 329.99892 * 21 19 17 25 25 H 1.09007 * 109.47431 * 60.00443 * 1 2 3 26 26 H 1.08996 * 109.47271 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47385 * 300.00421 * 1 2 3 28 28 H 1.08999 * 109.47413 * 174.99836 * 4 2 1 29 29 H 1.09007 * 109.46735 * 55.00250 * 4 2 1 30 30 H 1.08005 * 125.03598 * 0.26106 * 6 5 4 31 31 H 1.07994 * 126.49901 * 180.02562 * 7 6 5 32 32 H 1.07999 * 120.11823 * 359.94311 * 9 8 7 33 33 H 1.08004 * 119.73591 * 179.97438 * 10 9 8 34 34 H 1.08006 * 119.66385 * 180.02562 * 11 10 9 35 35 H 1.08002 * 120.10615 * 179.97438 * 12 11 10 36 36 H 0.97008 * 119.99596 * 0.02562 * 16 14 2 37 37 H 0.96997 * 120.00211 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6524 0.0355 2.4424 6 6 2.4412 0.9521 3.0825 7 6 1.7863 1.4620 4.1376 8 6 0.4707 0.8189 4.1766 9 6 -0.6375 0.9266 5.0190 10 6 -1.7475 0.1666 4.7801 11 6 -1.7827 -0.7119 3.7057 12 6 -0.7005 -0.8341 2.8624 13 6 0.4400 -0.0698 3.0866 14 6 2.0323 -0.7104 -1.2304 15 8 2.7296 -1.6965 -1.1190 16 7 1.7068 -0.2500 -2.4546 17 6 2.1634 -0.8967 -3.5739 18 1 2.7837 -1.7751 -3.4747 19 6 1.8281 -0.4217 -4.8359 20 7 2.2654 -1.0417 -5.9088 21 14 0.7547 1.0975 -5.0074 22 1 1.6135 2.3080 -5.0526 23 1 -0.0371 1.0052 -6.2604 24 1 -0.1660 1.1867 -3.8456 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.1263 -0.7993 1.2056 29 1 1.6053 -1.7197 1.2952 30 1 3.4408 1.2282 2.7807 31 1 2.1587 2.2053 4.8268 32 1 -0.6173 1.6078 5.8568 33 1 -2.6044 0.2500 5.4323 34 1 -2.6676 -1.3057 3.5295 35 1 -0.7375 -1.5207 2.0295 36 1 1.1493 0.5389 -2.5436 37 1 2.0317 -0.7099 -6.7898 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286063404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:14 Heat of formation + Delta-G solvation = 21.990814 kcal Electronic energy + Delta-G solvation = -20287.882554 eV Core-core repulsion = 17223.559425 eV Total energy + Delta-G solvation = -3064.323129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.36949 -38.81306 -37.03019 -34.60347 -33.99776 -31.90275 -31.25754 -29.92973 -28.74879 -26.04898 -25.33165 -22.98660 -22.19546 -21.45257 -19.98597 -19.21555 -18.31357 -17.22838 -16.40900 -15.73523 -15.38706 -15.32419 -14.80905 -14.62138 -13.89824 -13.80100 -13.60736 -13.11871 -12.92311 -12.83214 -12.59260 -12.37836 -12.21659 -11.90077 -11.66299 -11.56021 -11.30529 -10.95317 -10.91199 -10.72908 -10.64269 -10.05636 -9.68598 -9.58539 -8.67017 -8.29136 -8.11805 -7.59092 -6.40874 -3.92828 1.16938 1.67513 2.75910 2.88984 2.96425 3.00959 3.09666 3.58538 3.95658 4.02042 4.46233 4.72856 4.85940 4.87949 4.94051 5.03980 5.12994 5.19354 5.33711 5.41799 5.47002 5.64000 5.71465 5.79403 5.82446 5.84690 5.95690 5.96362 6.09392 6.16712 6.32544 6.49810 6.63349 6.80918 6.86485 7.30215 7.37669 7.45645 8.03322 8.46497 8.83146 9.31508 9.68046 10.71756 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028849 B = 0.004288 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.321838 B = 6527.646884 C = 6816.778955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 H 0.088 0.912 4 C 0.132 3.868 5 N -0.477 5.477 6 C 0.058 3.942 7 C -0.215 4.215 8 C -0.113 4.113 9 C -0.076 4.076 10 C -0.151 4.151 11 C -0.107 4.107 12 C -0.123 4.123 13 C 0.101 3.899 14 C 0.455 3.545 15 O -0.581 6.581 16 N -0.580 5.580 17 C -0.310 4.310 18 H 0.121 0.879 19 C 0.045 3.955 20 N -0.876 5.876 21 Si 0.877 3.123 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.269 1.269 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.167 0.833 31 H 0.143 0.857 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.372 0.628 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 6.413 18.477 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 H 0.106 0.894 4 C 0.010 3.990 5 N -0.158 5.158 6 C -0.068 4.068 7 C -0.240 4.240 8 C -0.117 4.117 9 C -0.094 4.094 10 C -0.170 4.170 11 C -0.126 4.126 12 C -0.143 4.143 13 C -0.005 4.005 14 C 0.240 3.760 15 O -0.465 6.465 16 N -0.217 5.217 17 C -0.438 4.438 18 H 0.139 0.861 19 C -0.159 4.159 20 N -0.515 5.515 21 Si 0.703 3.297 22 H -0.195 1.195 23 H -0.199 1.199 24 H -0.194 1.194 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.184 0.816 31 H 0.161 0.839 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.205 0.795 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.753 5.554 17.987 19.684 hybrid contribution -0.787 1.247 -0.526 1.566 sum -6.540 6.802 17.461 19.848 Atomic orbital electron populations 1.21984 0.93508 1.02639 1.02501 1.21537 0.97641 1.00841 0.94293 0.89380 1.21593 1.02127 0.94541 0.80714 1.44221 1.11835 1.35409 1.24345 1.21885 0.97229 0.93022 0.94672 1.21602 0.94052 1.06386 1.01964 1.19232 0.95483 0.99925 0.97110 1.20208 0.91932 0.99034 0.98273 1.20573 0.98407 0.98896 0.99160 1.20777 0.97649 0.99156 0.95036 1.20203 0.91721 1.01001 1.01418 1.18257 0.87793 0.99883 0.94584 1.19448 0.85649 0.87197 0.83695 1.90568 1.41694 1.28004 1.86206 1.42203 1.46414 1.27275 1.05839 1.19459 1.30208 1.12089 0.82056 0.86147 1.25047 0.97683 0.98063 0.95099 1.69613 1.44254 1.39660 0.98019 0.86708 0.80881 0.83355 0.78728 1.19462 1.19943 1.19433 0.92144 0.91961 0.91554 0.88160 0.88926 0.81598 0.83907 0.86491 0.86461 0.86047 0.86080 0.79499 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 7.83 37.15 0.29 -1.91 16 2 C -0.12 -1.95 2.93 -91.78 -0.27 -2.22 16 3 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 4 C 0.13 1.95 4.82 -4.05 -0.02 1.93 16 5 N -0.48 -6.50 2.68 -114.43 -0.31 -6.80 16 6 C 0.06 0.69 11.27 -16.73 -0.19 0.50 16 7 C -0.22 -2.55 11.08 -37.67 -0.42 -2.97 16 8 C -0.11 -1.50 6.37 -105.14 -0.67 -2.17 16 9 C -0.08 -0.88 10.05 -39.65 -0.40 -1.28 16 10 C -0.15 -1.63 9.97 -39.94 -0.40 -2.03 16 11 C -0.11 -1.21 10.01 -39.54 -0.40 -1.60 16 12 C -0.12 -1.59 8.28 -39.44 -0.33 -1.91 16 13 C 0.10 1.41 5.45 -83.99 -0.46 0.95 16 14 C 0.45 9.92 7.11 -10.99 -0.08 9.84 16 15 O -0.58 -14.83 15.49 5.55 0.09 -14.75 16 16 N -0.58 -13.54 4.98 -10.97 -0.05 -13.59 16 17 C -0.31 -8.58 10.16 -14.93 -0.15 -8.74 16 18 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 19 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 20 N -0.88 -25.15 13.96 55.50 0.77 -24.38 16 21 Si 0.88 19.12 27.74 -169.99 -4.71 14.40 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 25 H 0.06 0.89 7.57 -51.93 -0.39 0.50 16 26 H 0.06 0.92 7.38 -51.93 -0.38 0.53 16 27 H 0.07 0.92 5.46 -51.93 -0.28 0.64 16 28 H 0.10 1.49 7.93 -51.93 -0.41 1.08 16 29 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16 30 H 0.17 1.54 8.06 -52.48 -0.42 1.11 16 31 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 34 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 35 H 0.12 1.50 6.84 -52.49 -0.36 1.14 16 36 H 0.37 7.76 5.18 -40.82 -0.21 7.54 16 37 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 309.05 15.07 4.66 4.66 Total: -1.00 -31.56 309.05 -7.69 -39.25 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -4.56 Total: 11.70 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -3.58 Total: -10.49 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.41 Total: -44.77 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.09 Total: -14.75 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.56 -7.69 -39.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286063404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.240 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds