Wall clock time and date at job start Mon Mar 30 2020 01:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.47260 * 2 1 4 4 C 1.52997 * 109.47397 * 119.99328 * 2 1 3 5 5 N 1.46494 * 109.47533 * 295.00365 * 4 2 1 6 6 C 1.36826 * 125.06435 * 265.02389 * 5 4 2 7 7 C 1.34244 * 109.93190 * 179.97438 * 6 5 4 8 8 C 1.46487 * 106.99688 * 0.02562 * 7 6 5 9 9 C 1.39624 * 134.03153 * 180.02562 * 8 7 6 10 10 C 1.36626 * 119.76497 * 179.97438 * 9 8 7 11 11 C 1.38834 * 120.52624 * 359.97438 * 10 9 8 12 12 C 1.37741 * 120.66466 * 0.04449 * 11 10 9 13 13 C 1.37694 * 125.06287 * 85.01824 * 5 4 2 14 14 C 1.50697 * 109.47432 * 239.99989 * 2 1 3 15 15 O 1.21291 * 119.99767 * 240.00261 * 14 2 1 16 16 N 1.34776 * 120.00372 * 59.99649 * 14 2 1 17 17 C 1.37096 * 120.00140 * 180.02562 * 16 14 2 18 18 H 1.07994 * 119.99947 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99751 * 180.02562 * 17 16 14 20 20 N 1.31406 * 120.00041 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 120.00204 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47235 * 90.00133 * 21 19 17 23 23 H 1.48500 * 109.47126 * 210.00415 * 21 19 17 24 24 H 1.48504 * 109.46787 * 329.99892 * 21 19 17 25 25 H 1.09007 * 109.47431 * 60.00443 * 1 2 3 26 26 H 1.08996 * 109.47271 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47385 * 300.00421 * 1 2 3 28 28 H 1.08999 * 109.47413 * 174.99836 * 4 2 1 29 29 H 1.09007 * 109.46735 * 55.00250 * 4 2 1 30 30 H 1.08005 * 125.03598 * 0.26106 * 6 5 4 31 31 H 1.07994 * 126.49901 * 180.02562 * 7 6 5 32 32 H 1.07999 * 120.11823 * 359.94311 * 9 8 7 33 33 H 1.08004 * 119.73591 * 179.97438 * 10 9 8 34 34 H 1.08006 * 119.66385 * 180.02562 * 11 10 9 35 35 H 1.08002 * 120.10615 * 179.97438 * 12 11 10 36 36 H 0.97008 * 119.99596 * 0.02562 * 16 14 2 37 37 H 0.96997 * 120.00211 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6524 0.0355 2.4424 6 6 2.4412 0.9521 3.0825 7 6 1.7863 1.4620 4.1376 8 6 0.4707 0.8189 4.1766 9 6 -0.6375 0.9266 5.0190 10 6 -1.7475 0.1666 4.7801 11 6 -1.7827 -0.7119 3.7057 12 6 -0.7005 -0.8341 2.8624 13 6 0.4400 -0.0698 3.0866 14 6 2.0323 -0.7104 -1.2304 15 8 2.7296 -1.6965 -1.1190 16 7 1.7068 -0.2500 -2.4546 17 6 2.1634 -0.8967 -3.5739 18 1 2.7837 -1.7751 -3.4747 19 6 1.8281 -0.4217 -4.8359 20 7 2.2654 -1.0417 -5.9088 21 14 0.7547 1.0975 -5.0074 22 1 1.6135 2.3080 -5.0526 23 1 -0.0371 1.0052 -6.2604 24 1 -0.1660 1.1867 -3.8456 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.1263 -0.7993 1.2056 29 1 1.6053 -1.7197 1.2952 30 1 3.4408 1.2282 2.7807 31 1 2.1587 2.2053 4.8268 32 1 -0.6173 1.6078 5.8568 33 1 -2.6044 0.2500 5.4323 34 1 -2.6676 -1.3057 3.5295 35 1 -0.7375 -1.5207 2.0295 36 1 1.1493 0.5389 -2.5436 37 1 2.0317 -0.7099 -6.7898 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286063404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:14 Heat of formation + Delta-G solvation = 3.132783 kcal Electronic energy + Delta-G solvation = -20288.700300 eV Core-core repulsion = 17223.559425 eV Total energy + Delta-G solvation = -3065.140875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.32898 -40.55770 -37.97361 -36.23930 -35.62548 -33.83021 -32.37924 -30.93037 -29.63954 -27.26159 -27.14912 -24.24869 -23.29249 -22.35399 -21.32532 -20.81035 -20.04841 -18.45205 -17.35978 -17.19357 -17.02305 -16.27303 -16.18760 -16.07421 -15.21770 -15.01328 -14.86282 -14.60793 -14.28290 -14.24592 -13.88312 -13.57693 -13.35716 -13.18038 -13.02870 -12.76711 -12.47224 -12.42639 -12.20554 -12.04075 -11.94452 -11.63661 -11.59186 -10.51200 -10.50983 -10.32163 -9.04246 -8.51505 -8.47159 -6.08557 0.28455 0.77336 1.26195 1.30068 1.39534 1.80985 1.82586 1.88991 2.17320 2.86625 3.06675 3.08869 3.62941 3.68756 3.79036 3.96101 4.05429 4.17233 4.26231 4.33763 4.36203 4.57256 4.63731 4.70598 4.74081 4.85843 4.88564 5.02591 5.09687 5.13986 5.24717 5.47425 5.64014 5.77106 5.88415 5.93016 5.99170 6.39286 6.41605 6.49055 6.78964 7.29959 7.82505 8.69920 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028849 B = 0.004288 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.321838 B = 6527.646884 C = 6816.778955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.110 0.890 4 C 0.142 3.858 5 N -0.483 5.483 6 C 0.045 3.955 7 C -0.214 4.214 8 C -0.134 4.134 9 C -0.082 4.082 10 C -0.152 4.152 11 C -0.107 4.107 12 C -0.143 4.143 13 C 0.078 3.922 14 C 0.459 3.541 15 O -0.622 6.622 16 N -0.582 5.582 17 C -0.332 4.332 18 H 0.061 0.939 19 C -0.008 4.008 20 N -0.928 5.928 21 Si 0.957 3.043 22 H -0.256 1.256 23 H -0.272 1.272 24 H -0.235 1.235 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.189 0.811 31 H 0.166 0.834 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.117 0.883 36 H 0.388 0.612 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 9.180 20.456 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 H 0.128 0.872 4 C 0.019 3.981 5 N -0.165 5.165 6 C -0.079 4.079 7 C -0.239 4.239 8 C -0.139 4.139 9 C -0.100 4.100 10 C -0.171 4.171 11 C -0.126 4.126 12 C -0.164 4.164 13 C -0.027 4.027 14 C 0.246 3.754 15 O -0.508 6.508 16 N -0.221 5.221 17 C -0.461 4.461 18 H 0.079 0.921 19 C -0.208 4.208 20 N -0.568 5.568 21 Si 0.777 3.223 22 H -0.180 1.180 23 H -0.196 1.196 24 H -0.159 1.159 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.206 0.794 31 H 0.184 0.816 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.135 0.865 36 H 0.224 0.776 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.843 8.332 20.008 23.049 hybrid contribution -0.105 0.273 -1.019 1.060 sum -7.948 8.605 18.989 22.311 Atomic orbital electron populations 1.21946 0.91918 1.02728 1.03378 1.21450 0.98716 1.01061 0.91535 0.87193 1.21320 1.01669 0.94087 0.81019 1.44129 1.12323 1.36014 1.24047 1.22354 0.98124 0.92670 0.94772 1.21945 0.93476 1.06402 1.02067 1.19618 0.96628 1.00250 0.97401 1.20557 0.91568 0.99364 0.98554 1.20940 0.99083 0.98002 0.99075 1.21119 0.97795 0.99072 0.94618 1.20345 0.92321 1.01506 1.02184 1.18545 0.88107 1.00758 0.95318 1.20514 0.83741 0.86298 0.84813 1.90551 1.43172 1.30011 1.87070 1.42030 1.47151 1.27814 1.05121 1.19046 1.31074 1.11556 0.84439 0.92136 1.26046 0.98915 1.01998 0.93818 1.69780 1.45968 1.42104 0.98927 0.85479 0.79022 0.77920 0.79893 1.17988 1.19640 1.15889 0.91603 0.92408 0.90170 0.88566 0.90164 0.79389 0.81621 0.84315 0.83743 0.83974 0.86499 0.77599 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 7.83 71.98 0.56 -3.37 16 2 C -0.11 -3.28 2.93 -11.54 -0.03 -3.31 16 3 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 4 C 0.14 4.14 4.82 86.38 0.42 4.56 16 5 N -0.48 -12.54 2.68 -515.94 -1.38 -13.92 16 6 C 0.05 1.00 11.27 83.00 0.94 1.93 16 7 C -0.21 -4.57 11.08 23.51 0.26 -4.31 16 8 C -0.13 -3.28 6.37 -20.20 -0.13 -3.41 16 9 C -0.08 -1.67 10.05 22.23 0.22 -1.44 16 10 C -0.15 -2.82 9.97 22.04 0.22 -2.60 16 11 C -0.11 -2.17 10.01 22.29 0.22 -1.95 16 12 C -0.14 -3.51 8.28 22.36 0.19 -3.32 16 13 C 0.08 2.08 5.45 39.03 0.21 2.29 16 14 C 0.46 20.20 7.11 87.66 0.62 20.82 16 15 O -0.62 -33.07 15.49 -3.06 -0.05 -33.12 16 16 N -0.58 -27.13 4.98 -306.99 -1.53 -28.66 16 17 C -0.33 -19.14 10.16 84.04 0.85 -18.28 16 18 H 0.06 4.13 7.39 -2.91 -0.02 4.11 16 19 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 20 N -0.93 -55.02 13.96 21.66 0.30 -54.72 16 21 Si 0.96 38.38 27.74 68.60 1.90 40.29 16 22 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 24 H -0.24 -8.09 6.52 99.48 0.65 -7.44 16 25 H 0.06 1.75 7.57 -2.38 -0.02 1.73 16 26 H 0.06 1.64 7.38 -2.39 -0.02 1.63 16 27 H 0.08 2.05 5.46 -2.38 -0.01 2.04 16 28 H 0.10 2.87 7.93 -2.39 -0.02 2.85 16 29 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 30 H 0.19 3.06 8.06 -2.91 -0.02 3.03 16 31 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.12 2.85 6.84 -2.91 -0.02 2.83 16 36 H 0.39 15.37 5.18 -92.70 -0.48 14.88 16 37 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -72.15 309.05 4.81 -67.33 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.55 Total: 35.17 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 5.02 Total: -12.37 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -2.61 Total: -97.30 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.05 Total: -33.12 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.90 Total: 40.29 kcal Total: -72.15 4.81 -67.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286063404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.465 kcal (2) G-P(sol) polarization free energy of solvation -72.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds