Wall clock time and date at job start Mon Mar 30 2020 01:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36760 * 125.07539 * 2 1 4 4 C 1.34265 * 109.90587 * 180.02562 * 3 2 1 5 5 C 1.46483 * 107.00130 * 359.97438 * 4 3 2 6 6 C 1.39782 * 133.97906 * 180.02562 * 5 4 3 7 7 C 1.36613 * 119.89897 * 179.97438 * 6 5 4 8 8 C 1.38763 * 120.59336 * 359.96509 * 7 6 5 9 9 C 1.38361 * 120.58247 * 0.03793 * 8 7 6 10 10 N 1.40014 * 120.17637 * 179.97438 * 9 8 7 11 11 C 1.34780 * 119.99760 * 325.07619 * 10 9 8 12 12 O 1.21295 * 119.99869 * 4.50792 * 11 10 9 13 13 C 1.50693 * 120.00026 * 184.50767 * 11 10 9 14 14 C 1.53003 * 109.47251 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47180 * 179.97438 * 14 13 11 16 16 H 1.07992 * 120.00080 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99963 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99927 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00074 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47019 * 89.99702 * 19 17 15 21 21 H 1.48501 * 109.46987 * 209.99479 * 19 17 15 22 22 H 1.48498 * 109.47069 * 329.99745 * 19 17 15 23 23 C 1.37769 * 125.07055 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.46736 * 274.70589 * 1 2 3 25 25 H 1.09004 * 109.47056 * 34.70581 * 1 2 3 26 26 H 1.08993 * 109.47298 * 154.70626 * 1 2 3 27 27 H 1.08005 * 125.04983 * 359.97438 * 3 2 1 28 28 H 1.07993 * 126.49782 * 180.25968 * 4 3 2 29 29 H 1.08002 * 120.04511 * 0.02562 * 6 5 4 30 30 H 1.07999 * 119.70388 * 179.97438 * 7 6 5 31 31 H 1.07999 * 119.70876 * 180.02562 * 8 7 6 32 32 H 0.96998 * 120.00614 * 145.08280 * 10 9 8 33 33 H 1.08999 * 109.47733 * 300.00062 * 13 11 10 34 34 H 1.09000 * 109.47410 * 60.00466 * 13 11 10 35 35 H 1.08998 * 109.47372 * 300.00207 * 14 13 11 36 36 H 1.09000 * 109.47237 * 60.00310 * 14 13 11 37 37 H 0.96996 * 120.00128 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2510 1.1192 0.0000 4 6 3.5468 0.7679 -0.0006 5 6 3.5936 -0.6962 -0.0003 6 6 4.6300 -1.6342 -0.0002 7 6 4.3402 -2.9692 0.0005 8 6 3.0231 -3.4059 0.0019 9 6 1.9800 -2.4969 0.0018 10 7 0.6542 -2.9470 0.0026 11 6 0.3235 -4.0703 -0.6647 12 8 1.1865 -4.7356 -1.1974 13 6 -1.1185 -4.4996 -0.7491 14 6 -1.2183 -5.7963 -1.5553 15 6 -2.6603 -6.2260 -1.6391 16 1 -3.4288 -5.6334 -1.1653 17 6 -2.9985 -7.3757 -2.3208 18 7 -2.0627 -8.0972 -2.8983 19 14 -4.7860 -7.9080 -2.4254 20 1 -5.4120 -7.3063 -3.6301 21 1 -4.8570 -9.3885 -2.5178 22 1 -5.5100 -7.4524 -1.2115 23 6 2.2567 -1.1276 -0.0005 24 1 -0.3632 0.0843 1.0242 25 1 -0.3633 0.8449 -0.5851 26 1 -0.3633 -0.9291 -0.4390 27 1 1.8838 2.1350 -0.0004 28 1 4.3939 1.4377 0.0032 29 1 5.6583 -1.3039 0.0001 30 1 5.1434 -3.6912 0.0002 31 1 2.8103 -4.4648 0.0029 32 1 -0.0263 -2.4504 0.4834 33 1 -1.5076 -4.6660 0.2554 34 1 -1.7015 -3.7205 -1.2401 35 1 -0.8292 -5.6304 -2.5598 36 1 -0.6354 -6.5753 -1.0639 37 1 -2.3005 -8.9062 -3.3776 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291859056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:13 Heat of formation + Delta-G solvation = 24.370191 kcal Electronic energy + Delta-G solvation = -19987.594233 eV Core-core repulsion = 16923.374281 eV Total energy + Delta-G solvation = -3064.219952 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.48284 -39.49939 -36.88371 -34.83552 -33.53339 -32.17519 -31.13120 -29.47958 -28.79668 -26.36619 -25.56604 -22.98927 -22.09165 -21.44792 -20.13858 -19.60260 -17.57636 -16.99059 -16.64452 -15.77923 -15.62842 -15.49286 -14.98584 -14.81101 -14.44524 -13.79163 -13.41118 -13.36704 -12.97341 -12.85237 -12.46133 -12.41213 -12.21941 -11.65595 -11.37909 -11.31333 -11.18211 -10.96894 -10.64190 -10.25857 -10.03899 -9.72075 -9.23347 -9.08826 -8.96264 -8.36557 -8.15248 -7.29131 -6.00182 -4.05174 1.18091 1.69502 2.61937 2.69793 3.10554 3.30447 3.32662 3.37490 3.39904 4.02365 4.43709 4.54242 4.67108 4.74400 4.93047 5.08856 5.22910 5.24574 5.34859 5.43635 5.53296 5.61058 5.77080 5.89965 6.06976 6.09802 6.12962 6.44670 6.51988 6.76092 6.79435 6.80230 6.86669 7.18519 7.30973 7.64330 7.69202 7.78924 8.01333 8.31957 8.58478 9.02708 9.58679 11.10684 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031890 B = 0.003767 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.807344 B = 7430.383083 C = 8169.705812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.486 5.486 3 C 0.047 3.953 4 C -0.207 4.207 5 C -0.095 4.095 6 C -0.096 4.096 7 C -0.123 4.123 8 C -0.108 4.108 9 C 0.145 3.855 10 N -0.689 5.689 11 C 0.507 3.493 12 O -0.509 6.509 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.888 5.888 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.072 3.928 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.166 0.834 28 H 0.145 0.855 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.144 0.856 32 H 0.401 0.599 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.178 19.203 8.401 22.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.169 5.169 3 C -0.078 4.078 4 C -0.232 4.232 5 C -0.100 4.100 6 C -0.116 4.116 7 C -0.143 4.143 8 C -0.130 4.130 9 C 0.049 3.951 10 N -0.337 5.337 11 C 0.297 3.703 12 O -0.382 6.382 13 C -0.168 4.168 14 C -0.001 4.001 15 C -0.567 4.567 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.035 4.035 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.183 0.817 28 H 0.163 0.837 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.162 0.838 32 H 0.237 0.763 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.386 18.521 7.870 21.801 hybrid contribution -1.438 0.039 0.088 1.441 sum 6.948 18.560 7.958 21.356 Atomic orbital electron populations 1.22120 0.77419 1.04749 1.03006 1.43724 1.05665 1.04182 1.63377 1.21739 0.90551 0.90910 1.04594 1.21622 0.95849 0.92746 1.13000 1.19030 0.91379 0.93428 1.06191 1.20203 0.97635 0.92006 1.01729 1.20566 0.96067 0.95347 1.02281 1.21094 0.90925 1.00218 1.00775 1.16852 0.85189 0.88133 1.04952 1.44048 1.07767 1.28582 1.53328 1.21821 0.93378 0.78866 0.76262 1.90673 1.51273 1.51946 1.44346 1.21910 0.88743 1.02820 1.03364 1.18918 0.96848 0.89141 0.95175 1.21184 0.92649 1.08638 1.34278 0.92594 1.25025 0.97316 0.96530 0.95457 1.69994 1.32367 1.15657 1.34645 0.86582 0.85115 0.77816 0.78377 1.20661 1.21171 1.19881 1.18102 0.90811 0.86674 1.07863 0.91094 0.89764 0.89684 0.81663 0.83693 0.86228 0.85793 0.83809 0.76251 0.89898 0.90067 0.95701 0.95630 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 10.35 59.85 0.62 1.17 16 2 N -0.49 -5.51 3.18 -121.67 -0.39 -5.89 16 3 C 0.05 0.46 11.29 -16.75 -0.19 0.27 16 4 C -0.21 -2.26 11.08 -37.66 -0.42 -2.68 16 5 C -0.10 -1.30 6.37 -105.15 -0.67 -1.97 16 6 C -0.10 -1.25 10.05 -39.59 -0.40 -1.65 16 7 C -0.12 -1.71 9.97 -39.97 -0.40 -2.11 16 8 C -0.11 -1.78 8.69 -39.34 -0.34 -2.12 16 9 C 0.15 2.30 6.32 -83.53 -0.53 1.77 16 10 N -0.69 -10.41 4.48 -9.76 -0.04 -10.46 16 11 C 0.51 9.69 7.67 -10.99 -0.08 9.61 16 12 O -0.51 -11.77 13.42 5.54 0.07 -11.69 16 13 C -0.13 -2.52 5.64 -27.88 -0.16 -2.67 16 14 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 15 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 19 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.07 1.04 6.81 -83.80 -0.57 0.47 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.76 5.84 -51.93 -0.30 0.46 16 27 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 28 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.14 2.62 6.19 -52.49 -0.33 2.29 16 32 H 0.40 4.69 6.69 -40.82 -0.27 4.42 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 36 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 314.07 15.07 4.73 4.73 Total: -1.00 -34.90 314.07 -8.24 -43.14 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.67 Total: 2.72 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -3.67 Total: -12.54 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.31 Total: -42.75 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.07 Total: -11.69 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.90 -8.24 -43.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291859056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.513 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds