Wall clock time and date at job start Mon Mar 30 2020 01:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36760 * 125.07539 * 2 1 4 4 C 1.34265 * 109.90587 * 180.02562 * 3 2 1 5 5 C 1.46483 * 107.00130 * 359.97438 * 4 3 2 6 6 C 1.39782 * 133.97906 * 180.02562 * 5 4 3 7 7 C 1.36613 * 119.89897 * 179.97438 * 6 5 4 8 8 C 1.38763 * 120.59336 * 359.96509 * 7 6 5 9 9 C 1.38361 * 120.58247 * 0.03793 * 8 7 6 10 10 N 1.40014 * 120.17637 * 179.97438 * 9 8 7 11 11 C 1.34780 * 119.99760 * 325.07619 * 10 9 8 12 12 O 1.21295 * 119.99869 * 4.50792 * 11 10 9 13 13 C 1.50693 * 120.00026 * 184.50767 * 11 10 9 14 14 C 1.53003 * 109.47251 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47180 * 179.97438 * 14 13 11 16 16 H 1.07992 * 120.00080 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99963 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99927 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00074 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47019 * 89.99702 * 19 17 15 21 21 H 1.48501 * 109.46987 * 209.99479 * 19 17 15 22 22 H 1.48498 * 109.47069 * 329.99745 * 19 17 15 23 23 C 1.37769 * 125.07055 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.46736 * 274.70589 * 1 2 3 25 25 H 1.09004 * 109.47056 * 34.70581 * 1 2 3 26 26 H 1.08993 * 109.47298 * 154.70626 * 1 2 3 27 27 H 1.08005 * 125.04983 * 359.97438 * 3 2 1 28 28 H 1.07993 * 126.49782 * 180.25968 * 4 3 2 29 29 H 1.08002 * 120.04511 * 0.02562 * 6 5 4 30 30 H 1.07999 * 119.70388 * 179.97438 * 7 6 5 31 31 H 1.07999 * 119.70876 * 180.02562 * 8 7 6 32 32 H 0.96998 * 120.00614 * 145.08280 * 10 9 8 33 33 H 1.08999 * 109.47733 * 300.00062 * 13 11 10 34 34 H 1.09000 * 109.47410 * 60.00466 * 13 11 10 35 35 H 1.08998 * 109.47372 * 300.00207 * 14 13 11 36 36 H 1.09000 * 109.47237 * 60.00310 * 14 13 11 37 37 H 0.96996 * 120.00128 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2510 1.1192 0.0000 4 6 3.5468 0.7679 -0.0006 5 6 3.5936 -0.6962 -0.0003 6 6 4.6300 -1.6342 -0.0002 7 6 4.3402 -2.9692 0.0005 8 6 3.0231 -3.4059 0.0019 9 6 1.9800 -2.4969 0.0018 10 7 0.6542 -2.9470 0.0026 11 6 0.3235 -4.0703 -0.6647 12 8 1.1865 -4.7356 -1.1974 13 6 -1.1185 -4.4996 -0.7491 14 6 -1.2183 -5.7963 -1.5553 15 6 -2.6603 -6.2260 -1.6391 16 1 -3.4288 -5.6334 -1.1653 17 6 -2.9985 -7.3757 -2.3208 18 7 -2.0627 -8.0972 -2.8983 19 14 -4.7860 -7.9080 -2.4254 20 1 -5.4120 -7.3063 -3.6301 21 1 -4.8570 -9.3885 -2.5178 22 1 -5.5100 -7.4524 -1.2115 23 6 2.2567 -1.1276 -0.0005 24 1 -0.3632 0.0843 1.0242 25 1 -0.3633 0.8449 -0.5851 26 1 -0.3633 -0.9291 -0.4390 27 1 1.8838 2.1350 -0.0004 28 1 4.3939 1.4377 0.0032 29 1 5.6583 -1.3039 0.0001 30 1 5.1434 -3.6912 0.0002 31 1 2.8103 -4.4648 0.0029 32 1 -0.0263 -2.4504 0.4834 33 1 -1.5076 -4.6660 0.2554 34 1 -1.7015 -3.7205 -1.2401 35 1 -0.8292 -5.6304 -2.5598 36 1 -0.6354 -6.5753 -1.0639 37 1 -2.3005 -8.9062 -3.3776 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291859056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:13 Heat of formation + Delta-G solvation = 2.494487 kcal Electronic energy + Delta-G solvation = -19988.542835 eV Core-core repulsion = 16923.374281 eV Total energy + Delta-G solvation = -3065.168553 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.46547 -40.90115 -37.97970 -36.12505 -35.58773 -33.32498 -32.79645 -30.64300 -29.80834 -27.85465 -26.81320 -24.48741 -23.16857 -22.91785 -21.22632 -20.96635 -18.92237 -18.50110 -17.80551 -17.40030 -16.72191 -16.63049 -16.46254 -16.16736 -15.83589 -15.05564 -14.86441 -14.35839 -14.25036 -13.93479 -13.79779 -13.62687 -13.41692 -13.19366 -12.84241 -12.68404 -12.49669 -12.33904 -12.27255 -11.96380 -11.67188 -11.45514 -11.31421 -10.72411 -10.57936 -10.01036 -9.15463 -8.30768 -8.19073 -6.33500 0.11522 0.62884 1.41914 1.44561 1.52385 1.55468 1.85354 1.88788 2.06508 2.42782 2.94199 3.14203 3.73477 3.84114 3.85881 4.03213 4.15110 4.36148 4.40857 4.45875 4.47923 4.54518 4.64083 4.69917 4.85253 4.95501 4.99889 5.07110 5.38078 5.43857 5.48541 5.59057 5.69234 5.82007 5.83401 5.87144 6.14700 6.25176 6.35351 6.44587 6.84523 7.15347 7.36969 8.93532 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031890 B = 0.003767 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.807344 B = 7430.383083 C = 8169.705812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.488 5.488 3 C 0.061 3.939 4 C -0.221 4.221 5 C -0.114 4.114 6 C -0.091 4.091 7 C -0.136 4.136 8 C -0.136 4.136 9 C 0.124 3.876 10 N -0.665 5.665 11 C 0.509 3.491 12 O -0.561 6.561 13 C -0.115 4.115 14 C 0.042 3.958 15 C -0.543 4.543 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.254 1.254 23 C 0.054 3.946 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.071 0.929 27 H 0.211 0.789 28 H 0.170 0.830 29 H 0.149 0.851 30 H 0.139 0.861 31 H 0.114 0.886 32 H 0.419 0.581 33 H 0.110 0.890 34 H 0.110 0.890 35 H -0.017 1.017 36 H -0.016 1.016 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.579 22.678 9.486 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.171 5.171 3 C -0.064 4.064 4 C -0.246 4.246 5 C -0.120 4.120 6 C -0.110 4.110 7 C -0.155 4.155 8 C -0.158 4.158 9 C 0.028 3.972 10 N -0.314 5.314 11 C 0.299 3.701 12 O -0.438 6.438 13 C -0.154 4.154 14 C 0.004 3.996 15 C -0.581 4.581 16 H 0.096 0.904 17 C -0.204 4.204 18 N -0.577 5.577 19 Si 0.798 3.202 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.178 1.178 23 C -0.054 4.054 24 H 0.111 0.889 25 H 0.129 0.871 26 H 0.090 0.910 27 H 0.227 0.773 28 H 0.188 0.812 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.132 0.868 32 H 0.259 0.741 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.001 0.999 36 H 0.003 0.997 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.761 22.067 9.000 24.773 hybrid contribution -0.865 -0.911 -0.231 1.277 sum 5.896 21.157 8.770 23.649 Atomic orbital electron populations 1.22395 0.75553 1.05255 1.04904 1.44061 1.06967 1.03607 1.62451 1.22495 0.90064 0.92068 1.01771 1.21991 0.97527 0.91375 1.13678 1.19562 0.91264 0.95300 1.05888 1.20541 0.99147 0.91364 0.99936 1.20743 0.95403 0.96582 1.02809 1.21031 0.92724 0.99071 1.02953 1.16934 0.84739 0.89155 1.06408 1.43647 1.08414 1.27164 1.52141 1.21675 0.92721 0.79522 0.76193 1.90668 1.52377 1.53882 1.46866 1.21668 0.89763 1.00131 1.03878 1.18701 0.95799 0.91529 0.93584 1.21691 0.93501 1.08929 1.33943 0.90367 1.26145 1.02685 0.96690 0.94930 1.70181 1.35342 1.16341 1.35883 0.85313 0.78586 0.77044 0.79252 1.19727 1.21314 1.17766 1.18139 0.92095 0.86688 1.08438 0.88854 0.87081 0.91008 0.77278 0.81227 0.83368 0.84308 0.86848 0.74122 0.87173 0.87202 0.99905 0.99737 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 10.35 127.77 1.32 2.08 16 2 N -0.49 -9.63 3.18 -538.87 -1.71 -11.35 16 3 C 0.06 0.94 11.29 83.02 0.94 1.87 16 4 C -0.22 -4.11 11.08 23.51 0.26 -3.85 16 5 C -0.11 -2.96 6.37 -20.21 -0.13 -3.09 16 6 C -0.09 -2.28 10.05 22.26 0.22 -2.06 16 7 C -0.14 -3.91 9.97 22.01 0.22 -3.69 16 8 C -0.14 -4.79 8.69 22.42 0.19 -4.59 16 9 C 0.12 4.02 6.32 38.22 0.24 4.26 16 10 N -0.67 -20.26 4.48 -303.18 -1.36 -21.62 16 11 C 0.51 20.21 7.67 87.65 0.67 20.89 16 12 O -0.56 -27.98 13.42 -3.08 -0.04 -28.02 16 13 C -0.11 -4.51 5.64 29.85 0.17 -4.34 16 14 C 0.04 2.29 4.26 29.85 0.13 2.42 16 15 C -0.54 -30.49 9.11 25.60 0.23 -30.26 16 16 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 17 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 18 N -0.94 -59.44 13.29 21.45 0.28 -59.15 16 19 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 23 C 0.05 1.50 6.81 39.11 0.27 1.77 16 24 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 25 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.07 1.11 5.84 -2.39 -0.01 1.09 16 27 H 0.21 1.24 8.06 -2.91 -0.02 1.21 16 28 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 31 H 0.11 4.61 6.19 -2.91 -0.02 4.60 16 32 H 0.42 9.30 6.69 -92.71 -0.62 8.68 16 33 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 34 H 0.11 3.68 8.14 -2.39 -0.02 3.67 16 35 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 36 H -0.02 -0.99 8.10 -2.39 -0.02 -1.01 16 37 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -81.35 314.07 4.87 -76.48 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.46 Total: 16.26 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 5.20 Total: -18.54 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -2.79 Total: -92.11 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.04 Total: -28.02 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -81.35 4.87 -76.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291859056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.979 kcal (2) G-P(sol) polarization free energy of solvation -81.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds