Wall clock time and date at job start Mon Mar 30 2020 01:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 5 5 C 1.34779 * 119.99741 * 275.00368 * 4 2 1 6 6 O 1.21279 * 120.00369 * 359.97438 * 5 4 2 7 7 C 1.50708 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.52992 * 109.46960 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46945 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00136 * 0.02562 * 9 8 7 11 11 C 1.37883 * 120.00193 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99943 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00376 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47045 * 59.99671 * 13 11 9 15 15 H 1.48496 * 109.47270 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46917 * 300.00015 * 13 11 9 17 17 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 18 18 C 1.38361 * 119.84907 * 279.72628 * 17 2 1 19 19 C 1.37952 * 120.14876 * 179.76174 * 18 17 2 20 20 C 1.39631 * 119.84469 * 0.51274 * 19 18 17 21 21 C 1.43199 * 120.14923 * 179.76287 * 20 19 18 22 22 N 6.84435 * 109.47975 * 239.99733 * 2 1 3 23 23 C 1.39628 * 119.70120 * 359.74599 * 20 19 18 24 24 C 1.37950 * 119.84969 * 359.97438 * 23 20 19 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 27 27 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 28 28 H 0.96997 * 120.00110 * 94.99637 * 4 2 1 29 29 H 1.08994 * 109.47136 * 300.00021 * 7 5 4 30 30 H 1.09002 * 109.46457 * 59.99935 * 7 5 4 31 31 H 1.08994 * 109.47599 * 300.00210 * 8 7 5 32 32 H 1.09002 * 109.47005 * 60.00348 * 8 7 5 33 33 H 0.96994 * 120.00153 * 180.02562 * 12 11 9 34 34 H 1.08002 * 119.92271 * 0.02562 * 18 17 2 35 35 H 1.07999 * 120.07630 * 180.28008 * 19 18 17 36 36 H 1.08003 * 120.07540 * 179.97438 * 23 20 19 37 37 H 1.07998 * 119.92788 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6488 -0.7288 3.5878 8 6 2.7008 0.2545 4.7588 9 6 3.2032 -0.4559 5.9893 10 1 3.4600 -1.5037 5.9408 11 6 3.3349 0.2320 7.1770 12 7 3.0226 1.5081 7.2359 13 14 3.9583 -0.6484 8.7021 14 1 5.3197 -1.1822 8.4438 15 1 4.0087 0.3059 9.8387 16 1 3.0425 -1.7687 9.0360 17 6 2.0324 -0.7105 -1.2304 18 6 2.0708 -2.0932 -1.2597 19 6 2.5249 -2.7500 -2.3846 20 6 2.9564 -2.0159 -3.4912 21 6 3.4338 -2.6909 -4.6604 22 7 3.8125 -3.2266 -5.5879 23 6 2.9199 -0.6206 -3.4528 24 6 2.4580 0.0233 -2.3236 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6317 1.1527 29 1 1.9759 -1.5505 3.8326 30 1 3.6479 -1.1213 3.3987 31 1 3.3739 1.0760 4.5138 32 1 1.7018 0.6474 4.9480 33 1 3.1156 1.9921 8.0713 34 1 1.7406 -2.6597 -0.4015 35 1 2.5502 -3.8295 -2.4079 36 1 3.2526 -0.0468 -4.3051 37 1 2.4289 1.1024 -2.2926 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292366769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:59 Heat of formation + Delta-G solvation = 0.087334 kcal Electronic energy + Delta-G solvation = -19149.273470 eV Core-core repulsion = 16084.000535 eV Total energy + Delta-G solvation = -3065.272935 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.35135 -39.03728 -36.97484 -35.38818 -33.46454 -32.09000 -31.49028 -30.87383 -29.55253 -25.84804 -24.81921 -23.34642 -22.28665 -20.84905 -19.75645 -19.28320 -17.19975 -16.56818 -16.07252 -15.40184 -15.08760 -14.96324 -14.67549 -14.44934 -14.39984 -13.95529 -13.74423 -13.44207 -13.17438 -13.08761 -12.70674 -12.46414 -12.23514 -12.06766 -11.82268 -11.51996 -11.18514 -11.14272 -10.91932 -10.63025 -9.97138 -9.68869 -9.47427 -9.32607 -9.17348 -9.00909 -8.88792 -8.32915 -5.97185 -4.01667 0.32235 0.90012 2.29565 2.53418 3.19746 3.33635 3.36231 3.38899 3.40840 3.48558 3.54259 4.27585 4.39725 4.43809 4.46604 4.86967 5.00370 5.10468 5.18540 5.31476 5.37752 5.46117 5.51590 5.61103 5.75419 5.83386 5.84822 6.08229 6.15352 6.20616 6.21854 6.35677 6.66713 6.86847 7.10516 7.72595 7.80438 7.84585 8.05733 8.37142 8.72349 9.06690 9.61911 11.13682 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032379 B = 0.002947 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.537539 B = 9498.712580 C = 9998.056044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.175 3.825 3 H 0.099 0.901 4 N -0.740 5.740 5 C 0.512 3.488 6 O -0.532 6.532 7 C -0.130 4.130 8 C 0.037 3.963 9 C -0.528 4.528 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.890 5.890 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.053 4.053 18 C -0.115 4.115 19 C -0.064 4.064 20 C -0.036 4.036 21 C 0.256 3.744 22 N -0.421 5.421 23 C -0.065 4.065 24 C -0.109 4.109 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.396 0.604 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.261 0.739 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.472 -6.614 -20.110 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.070 3.930 3 H 0.117 0.883 4 N -0.396 5.396 5 C 0.301 3.699 6 O -0.407 6.407 7 C -0.170 4.170 8 C 0.000 4.000 9 C -0.566 4.566 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.054 4.054 18 C -0.134 4.134 19 C -0.085 4.085 20 C -0.040 4.040 21 C -0.059 4.059 22 N -0.096 5.096 23 C -0.086 4.086 24 C -0.128 4.128 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.231 0.769 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.100 -6.406 -21.362 22.516 hybrid contribution 0.319 -0.737 1.152 1.404 sum -2.781 -7.144 -20.210 21.615 Atomic orbital electron populations 1.22176 0.94034 1.02458 1.02999 1.19806 0.94377 0.97140 0.81651 0.88299 1.46383 1.69727 1.13962 1.09484 1.21585 0.76263 0.87634 0.84410 1.90671 1.48833 1.16352 1.84807 1.21878 1.00952 1.01070 0.93128 1.18890 0.98358 0.93317 0.89449 1.21183 1.44531 0.96308 0.94624 0.92668 1.25024 0.95543 0.94846 0.98950 1.69981 1.48058 1.08114 1.26672 0.86655 0.79366 0.79366 0.82556 1.20257 1.21296 1.20251 1.20349 0.95595 0.93988 0.95489 1.20930 1.00301 0.93834 0.98290 1.21160 0.95715 1.00197 0.91413 1.16008 1.05487 0.92717 0.89748 1.25747 0.93544 0.93549 0.93037 1.81271 1.09237 1.08329 1.10787 1.21169 0.96827 0.92097 0.98496 1.21008 0.98687 1.00741 0.92339 0.92269 0.91067 0.91696 0.76859 0.90197 0.90204 0.95826 0.95819 0.92882 0.84718 0.84782 0.84797 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.46 37.16 0.35 -1.19 16 2 C 0.18 1.82 2.77 -69.08 -0.19 1.63 16 3 H 0.10 1.19 7.43 -51.93 -0.39 0.81 16 4 N -0.74 -8.98 5.02 -54.93 -0.28 -9.25 16 5 C 0.51 9.03 7.79 -10.98 -0.09 8.95 16 6 O -0.53 -11.65 15.64 5.56 0.09 -11.56 16 7 C -0.13 -2.49 5.64 -27.88 -0.16 -2.65 16 8 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 9 C -0.53 -14.68 9.11 -34.44 -0.31 -15.00 16 10 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 13 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 C -0.05 -0.42 4.96 -104.53 -0.52 -0.93 16 18 C -0.12 -0.77 9.04 -39.64 -0.36 -1.12 16 19 C -0.06 -0.41 9.76 -39.17 -0.38 -0.79 16 20 C -0.04 -0.26 5.73 -106.93 -0.61 -0.87 16 21 C 0.26 2.33 15.33 -22.47 -0.34 1.98 16 22 N -0.42 -4.85 18.54 41.84 0.78 -4.07 16 23 C -0.07 -0.42 9.76 -39.17 -0.38 -0.80 16 24 C -0.11 -0.75 9.65 -39.64 -0.38 -1.13 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.40 3.67 6.84 -40.82 -0.28 3.39 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 31 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.14 0.70 6.89 -52.49 -0.36 0.34 16 35 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 37 H 0.14 0.76 8.03 -52.49 -0.42 0.34 16 LS Contribution 330.34 15.07 4.98 4.98 Total: -1.00 -34.32 330.34 -7.10 -41.42 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -4.79 Total: -2.04 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -3.59 Total: -9.50 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 1.24 Total: -39.65 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.32 -7.10 -41.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292366769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.512 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds