Wall clock time and date at job start Mon Mar 30 2020 01:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 5 5 C 1.34779 * 119.99741 * 275.00368 * 4 2 1 6 6 O 1.21279 * 120.00369 * 359.97438 * 5 4 2 7 7 C 1.50708 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.52992 * 109.46960 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46945 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00136 * 0.02562 * 9 8 7 11 11 C 1.37883 * 120.00193 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99943 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00376 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47045 * 59.99671 * 13 11 9 15 15 H 1.48496 * 109.47270 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46917 * 300.00015 * 13 11 9 17 17 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 18 18 C 1.38361 * 119.84907 * 279.72628 * 17 2 1 19 19 C 1.37952 * 120.14876 * 179.76174 * 18 17 2 20 20 C 1.39631 * 119.84469 * 0.51274 * 19 18 17 21 21 C 1.43199 * 120.14923 * 179.76287 * 20 19 18 22 22 N 6.84435 * 109.47975 * 239.99733 * 2 1 3 23 23 C 1.39628 * 119.70120 * 359.74599 * 20 19 18 24 24 C 1.37950 * 119.84969 * 359.97438 * 23 20 19 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 27 27 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 28 28 H 0.96997 * 120.00110 * 94.99637 * 4 2 1 29 29 H 1.08994 * 109.47136 * 300.00021 * 7 5 4 30 30 H 1.09002 * 109.46457 * 59.99935 * 7 5 4 31 31 H 1.08994 * 109.47599 * 300.00210 * 8 7 5 32 32 H 1.09002 * 109.47005 * 60.00348 * 8 7 5 33 33 H 0.96994 * 120.00153 * 180.02562 * 12 11 9 34 34 H 1.08002 * 119.92271 * 0.02562 * 18 17 2 35 35 H 1.07999 * 120.07630 * 180.28008 * 19 18 17 36 36 H 1.08003 * 120.07540 * 179.97438 * 23 20 19 37 37 H 1.07998 * 119.92788 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6488 -0.7288 3.5878 8 6 2.7008 0.2545 4.7588 9 6 3.2032 -0.4559 5.9893 10 1 3.4600 -1.5037 5.9408 11 6 3.3349 0.2320 7.1770 12 7 3.0226 1.5081 7.2359 13 14 3.9583 -0.6484 8.7021 14 1 5.3197 -1.1822 8.4438 15 1 4.0087 0.3059 9.8387 16 1 3.0425 -1.7687 9.0360 17 6 2.0324 -0.7105 -1.2304 18 6 2.0708 -2.0932 -1.2597 19 6 2.5249 -2.7500 -2.3846 20 6 2.9564 -2.0159 -3.4912 21 6 3.4338 -2.6909 -4.6604 22 7 3.8125 -3.2266 -5.5879 23 6 2.9199 -0.6206 -3.4528 24 6 2.4580 0.0233 -2.3236 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6317 1.1527 29 1 1.9759 -1.5505 3.8326 30 1 3.6479 -1.1213 3.3987 31 1 3.3739 1.0760 4.5138 32 1 1.7018 0.6474 4.9480 33 1 3.1156 1.9921 8.0713 34 1 1.7406 -2.6597 -0.4015 35 1 2.5502 -3.8295 -2.4079 36 1 3.2526 -0.0468 -4.3051 37 1 2.4289 1.1024 -2.2926 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292366769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:59 Heat of formation + Delta-G solvation = -21.668099 kcal Electronic energy + Delta-G solvation = -19150.216857 eV Core-core repulsion = 16084.000535 eV Total energy + Delta-G solvation = -3066.216322 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.18989 -40.14200 -37.80074 -36.39646 -35.49083 -33.34797 -32.44269 -31.98820 -30.44825 -27.67226 -25.66847 -24.06518 -23.66845 -22.00344 -21.07040 -19.89196 -18.83500 -17.77762 -17.39109 -16.49446 -16.36413 -16.26995 -15.71764 -15.47466 -15.15165 -14.75360 -14.69830 -14.38936 -14.27302 -14.17394 -13.85833 -13.80208 -13.26340 -13.18241 -13.09340 -12.75793 -12.62855 -12.48437 -12.11564 -11.88425 -11.83502 -11.59011 -11.28025 -10.68488 -10.52903 -10.11511 -9.95703 -9.75402 -8.14863 -6.28423 -0.26935 0.41087 1.44448 1.48484 1.56104 1.59946 1.78292 1.88032 2.31290 2.47983 2.84383 2.89722 3.18187 3.56144 3.88471 3.98264 4.10911 4.30573 4.31926 4.44801 4.54571 4.57949 4.63168 4.74677 4.81217 4.96780 5.07286 5.15723 5.20675 5.31902 5.33207 5.44639 5.53863 5.67844 5.69154 5.82815 5.90051 6.21719 6.42698 6.66453 6.90580 7.40736 7.42913 8.97435 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032379 B = 0.002947 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.537539 B = 9498.712580 C = 9998.056044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.176 3.824 3 H 0.079 0.921 4 N -0.715 5.715 5 C 0.515 3.485 6 O -0.585 6.585 7 C -0.121 4.121 8 C 0.042 3.958 9 C -0.542 4.542 10 H 0.076 0.924 11 C -0.007 4.007 12 N -0.938 5.938 13 Si 0.972 3.028 14 H -0.263 1.263 15 H -0.289 1.289 16 H -0.262 1.262 17 C -0.058 4.058 18 C -0.114 4.114 19 C -0.057 4.057 20 C -0.043 4.043 21 C 0.280 3.720 22 N -0.469 5.469 23 C -0.060 4.060 24 C -0.112 4.112 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.415 0.585 29 H 0.105 0.895 30 H 0.103 0.897 31 H -0.018 1.018 32 H -0.017 1.017 33 H 0.262 0.738 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 -9.178 -20.678 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 H 0.097 0.903 4 N -0.369 5.369 5 C 0.304 3.696 6 O -0.464 6.464 7 C -0.161 4.161 8 C 0.004 3.996 9 C -0.580 4.580 10 H 0.094 0.906 11 C -0.205 4.205 12 N -0.578 5.578 13 Si 0.795 3.205 14 H -0.188 1.188 15 H -0.215 1.215 16 H -0.187 1.187 17 C -0.060 4.060 18 C -0.132 4.132 19 C -0.077 4.077 20 C -0.047 4.047 21 C -0.034 4.034 22 N -0.145 5.145 23 C -0.080 4.080 24 C -0.130 4.130 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.253 0.747 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.000 1.000 32 H 0.001 0.999 33 H 0.071 0.929 34 H 0.170 0.830 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.773 -9.039 -21.982 23.929 hybrid contribution 0.189 0.089 1.262 1.279 sum -2.585 -8.950 -20.721 22.718 Atomic orbital electron populations 1.22132 0.93373 1.03375 1.02359 1.19843 0.94903 0.96386 0.81753 0.90318 1.46062 1.67802 1.14617 1.08440 1.21251 0.76020 0.86839 0.85533 1.90661 1.51458 1.18585 1.85730 1.21642 1.03217 0.99774 0.91421 1.18681 0.94777 0.93731 0.92398 1.21709 1.43847 0.97306 0.95172 0.90596 1.26120 0.95722 0.95560 1.03060 1.70165 1.49694 1.10245 1.27664 0.85408 0.79371 0.78128 0.77548 1.18771 1.21516 1.18677 1.20139 0.96766 0.94561 0.94510 1.21079 0.99916 0.93218 0.98995 1.21345 0.94571 1.01182 0.90643 1.16118 1.06087 0.93056 0.89407 1.25957 0.92298 0.92476 0.92655 1.81299 1.11028 1.09870 1.12263 1.21317 0.96037 0.91900 0.98777 1.21127 0.98403 1.01363 0.92143 0.90518 0.94271 0.89798 0.74676 0.87641 0.87835 0.99982 0.99900 0.92926 0.82981 0.82878 0.83198 0.83531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.46 71.98 0.68 -2.13 16 2 C 0.18 3.41 2.77 44.25 0.12 3.54 16 3 H 0.08 1.90 7.43 -2.39 -0.02 1.88 16 4 N -0.71 -16.13 5.02 -446.08 -2.24 -18.37 16 5 C 0.52 18.15 7.79 87.66 0.68 18.83 16 6 O -0.58 -26.79 15.64 -3.03 -0.05 -26.84 16 7 C -0.12 -4.53 5.64 29.85 0.17 -4.37 16 8 C 0.04 2.26 4.26 29.85 0.13 2.39 16 9 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 10 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 11 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 12 N -0.94 -58.87 13.29 21.45 0.28 -58.58 16 13 Si 0.97 43.63 29.54 68.60 2.03 45.65 16 14 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 15 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 17 C -0.06 -0.77 4.96 -19.81 -0.10 -0.87 16 18 C -0.11 -1.11 9.04 22.23 0.20 -0.91 16 19 C -0.06 -0.53 9.76 22.54 0.22 -0.31 16 20 C -0.04 -0.50 5.73 -21.36 -0.12 -0.63 16 21 C 0.28 4.59 15.33 88.33 1.35 5.94 16 22 N -0.47 -10.33 18.54 19.00 0.35 -9.98 16 23 C -0.06 -0.61 9.76 22.54 0.22 -0.39 16 24 C -0.11 -1.28 9.65 22.23 0.21 -1.06 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.41 6.33 6.84 -92.71 -0.63 5.69 16 29 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 30 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 31 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 32 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 33 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.15 0.93 6.89 -2.91 -0.02 0.91 16 35 H 0.15 0.84 8.06 -2.91 -0.02 0.81 16 36 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.15 1.37 8.03 -2.91 -0.02 1.34 16 Total: -1.00 -78.48 330.34 5.29 -73.19 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 0.45 Total: 4.83 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 4.47 Total: -9.90 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -1.60 Total: -86.94 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -78.48 5.29 -73.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292366769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.526 kcal (2) G-P(sol) polarization free energy of solvation -78.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds