Wall clock time and date at job start Mon Mar 30 2020 01:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47196 * 2 1 4 4 N 1.46506 * 109.47171 * 240.00395 * 2 1 3 5 5 C 1.34773 * 119.99968 * 84.99494 * 4 2 1 6 6 O 1.21283 * 120.00360 * 359.73034 * 5 4 2 7 7 C 1.50706 * 120.00081 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.47348 * 179.72561 * 7 5 4 9 9 C 1.50696 * 109.46969 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00408 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99883 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99875 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 119.99961 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46983 * 89.99938 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00008 * 13 11 9 16 16 H 1.48505 * 109.47256 * 330.00013 * 13 11 9 17 17 C 1.50696 * 109.47280 * 120.00287 * 2 1 3 18 18 C 1.38361 * 119.85007 * 79.72574 * 17 2 1 19 19 C 1.37938 * 120.15546 * 179.76430 * 18 17 2 20 20 C 1.39637 * 119.84316 * 0.50708 * 19 18 17 21 21 C 1.43206 * 120.15064 * 179.76512 * 20 19 18 22 22 N 6.84437 * 109.46568 * 120.00170 * 2 1 3 23 23 C 1.39626 * 119.70095 * 359.74505 * 20 19 18 24 24 C 1.37950 * 119.84721 * 0.02562 * 23 20 19 25 25 H 1.09007 * 109.47428 * 59.99827 * 1 2 3 26 26 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46922 * 299.99659 * 1 2 3 28 28 H 0.96998 * 119.99507 * 265.00350 * 4 2 1 29 29 H 1.09001 * 109.46564 * 299.73030 * 7 5 4 30 30 H 1.08998 * 109.47012 * 59.72084 * 7 5 4 31 31 H 1.09000 * 109.46986 * 300.00089 * 8 7 5 32 32 H 1.09002 * 109.46857 * 60.00224 * 8 7 5 33 33 H 0.96999 * 119.99804 * 180.02562 * 12 11 9 34 34 H 1.08006 * 119.91884 * 0.02562 * 18 17 2 35 35 H 1.07996 * 120.08296 * 180.22869 * 19 18 17 36 36 H 1.07999 * 120.08307 * 179.97438 * 23 20 19 37 37 H 1.07991 * 119.93094 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0182 -2.3572 6 8 1.8538 1.1574 -2.4129 7 6 2.6487 -0.7286 -3.5879 8 6 2.6937 0.2529 -4.7607 9 6 3.1961 -0.4575 -5.9911 10 1 3.4568 -1.5043 -5.9417 11 6 3.3229 0.2292 -7.1801 12 7 3.7609 -0.3909 -8.2540 13 14 2.8727 2.0400 -7.2654 14 1 4.0681 2.8627 -6.9498 15 1 2.3936 2.3671 -8.6324 16 1 1.7986 2.3300 -6.2818 17 6 2.0323 -0.7104 1.2304 18 6 2.0601 -2.0934 1.2640 19 6 2.5232 -2.7501 2.3851 20 6 2.9547 -2.0160 3.4918 21 6 3.4321 -2.6911 4.6610 22 7 3.8108 -3.2267 5.5885 23 6 2.9191 -0.6207 3.4531 24 6 2.4579 0.0232 2.3236 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2489 -1.6317 -1.1527 29 1 3.6498 -1.1169 -3.4003 30 1 1.9786 -1.5535 -3.8298 31 1 1.6926 0.6411 -4.9481 32 1 3.3640 1.0777 -4.5187 33 1 3.8505 0.0923 -9.0903 34 1 1.7223 -2.6599 0.4087 35 1 2.5478 -3.8295 2.4087 36 1 3.2509 -0.0469 4.3057 37 1 2.4302 1.1023 2.2921 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292366776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:02 Heat of formation + Delta-G solvation = 2.749965 kcal Electronic energy + Delta-G solvation = -19208.780526 eV Core-core repulsion = 16143.623051 eV Total energy + Delta-G solvation = -3065.157475 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41403 -39.15220 -37.01720 -35.47606 -33.50129 -32.16428 -31.54499 -31.14788 -29.68879 -26.21455 -24.88541 -23.38253 -22.13405 -20.74100 -19.80384 -19.32796 -17.47058 -16.65085 -16.31644 -15.56022 -15.14020 -15.10046 -14.72965 -14.46562 -14.11791 -13.98077 -13.81054 -13.51562 -13.29447 -13.12602 -12.81360 -12.57183 -12.49227 -12.27496 -11.91858 -11.57332 -11.43845 -11.21395 -10.97498 -10.19006 -10.06910 -9.80473 -9.51315 -9.40785 -9.21977 -9.15312 -8.98533 -8.52137 -6.04384 -4.03261 0.28394 0.86227 2.27229 2.50048 3.05535 3.30226 3.36729 3.43496 3.45503 3.48013 3.53693 4.21454 4.35810 4.40306 4.49496 4.82699 4.95472 5.03728 5.11808 5.26503 5.31118 5.35419 5.47360 5.52665 5.69881 5.76475 5.81309 6.00042 6.05102 6.06658 6.10197 6.31489 6.55845 6.66459 7.08091 7.34114 7.41319 7.67428 7.77587 8.47640 8.59287 8.98693 9.58579 11.08434 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034968 B = 0.003071 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.551161 B = 9114.810589 C = 9494.238236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.176 3.824 3 H 0.099 0.901 4 N -0.738 5.738 5 C 0.513 3.487 6 O -0.538 6.538 7 C -0.123 4.123 8 C 0.002 3.998 9 C -0.525 4.525 10 H 0.072 0.928 11 C 0.068 3.932 12 N -0.903 5.903 13 Si 0.878 3.122 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.261 1.261 17 C -0.054 4.054 18 C -0.115 4.115 19 C -0.064 4.064 20 C -0.035 4.035 21 C 0.256 3.744 22 N -0.420 5.420 23 C -0.065 4.065 24 C -0.109 4.109 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.398 0.602 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.023 0.977 32 H 0.019 0.981 33 H 0.263 0.737 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.257 -2.375 22.839 23.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.071 3.929 3 H 0.117 0.883 4 N -0.393 5.393 5 C 0.302 3.698 6 O -0.414 6.414 7 C -0.162 4.162 8 C -0.036 4.036 9 C -0.563 4.563 10 H 0.091 0.909 11 C -0.133 4.133 12 N -0.542 5.542 13 Si 0.705 3.295 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.185 1.185 17 C -0.056 4.056 18 C -0.133 4.133 19 C -0.084 4.084 20 C -0.038 4.038 21 C -0.059 4.059 22 N -0.095 5.095 23 C -0.086 4.086 24 C -0.128 4.128 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.233 0.767 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.841 -2.312 24.028 24.620 hybrid contribution -0.169 0.587 -0.462 0.766 sum -5.010 -1.725 23.566 24.154 Atomic orbital electron populations 1.22176 0.93973 1.02551 1.02987 1.19812 0.94411 0.97096 0.81620 0.88306 1.46340 1.69428 1.14059 1.09457 1.21559 0.76210 0.87537 0.84523 1.90656 1.49209 1.16544 1.84943 1.21681 1.01735 1.00647 0.92185 1.19365 0.97746 0.94414 0.92086 1.21111 1.44145 0.98415 0.92660 0.90943 1.24982 0.94427 0.98317 0.95562 1.69911 1.46787 1.36779 1.00747 0.86791 0.79782 0.85682 0.77259 1.20254 1.21474 1.18515 1.20325 0.95795 0.93998 0.95446 1.20931 1.00211 0.93805 0.98374 1.21167 0.95603 1.00250 0.91423 1.16015 1.05392 0.92708 0.89725 1.25741 0.93578 0.93578 0.93051 1.81272 1.09166 1.08286 1.10778 1.21169 0.96817 0.92111 0.98500 1.20996 0.98744 1.00702 0.92330 0.91124 0.92178 0.91641 0.76659 0.89571 0.89536 0.95824 0.96278 0.92711 0.84684 0.84725 0.84784 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.46 37.15 0.35 -1.08 16 2 C 0.18 1.69 2.77 -69.08 -0.19 1.50 16 3 H 0.10 1.11 7.43 -51.93 -0.39 0.72 16 4 N -0.74 -8.36 5.02 -54.93 -0.28 -8.64 16 5 C 0.51 8.45 7.79 -10.98 -0.09 8.37 16 6 O -0.54 -10.95 15.65 5.56 0.09 -10.86 16 7 C -0.12 -2.22 5.64 -27.88 -0.16 -2.38 16 8 C 0.00 0.04 3.33 -27.89 -0.09 -0.05 16 9 C -0.53 -14.71 9.66 -34.44 -0.33 -15.05 16 10 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 11 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 12 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 13 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 17 C -0.05 -0.40 4.96 -104.53 -0.52 -0.92 16 18 C -0.11 -0.72 9.03 -39.65 -0.36 -1.07 16 19 C -0.06 -0.38 9.76 -39.17 -0.38 -0.77 16 20 C -0.03 -0.24 5.73 -106.93 -0.61 -0.85 16 21 C 0.26 2.26 15.33 -22.47 -0.34 1.92 16 22 N -0.42 -4.76 18.54 41.84 0.78 -3.98 16 23 C -0.07 -0.39 9.76 -39.17 -0.38 -0.78 16 24 C -0.11 -0.70 9.65 -39.64 -0.38 -1.08 16 25 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.40 3.42 6.87 -40.82 -0.28 3.14 16 29 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 32 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.14 0.65 6.92 -52.48 -0.36 0.29 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.14 0.69 8.03 -52.49 -0.42 0.27 16 LS Contribution 326.79 15.07 4.92 4.92 Total: -1.00 -34.46 326.79 -6.73 -41.18 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -4.76 Total: -2.93 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -3.59 Total: -10.34 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 1.27 Total: -39.52 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.46 -6.73 -41.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292366776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.935 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds