Wall clock time and date at job start Mon Mar 30 2020 01:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47196 * 2 1 4 4 N 1.46506 * 109.47171 * 240.00395 * 2 1 3 5 5 C 1.34773 * 119.99968 * 84.99494 * 4 2 1 6 6 O 1.21283 * 120.00360 * 359.73034 * 5 4 2 7 7 C 1.50706 * 120.00081 * 180.02562 * 5 4 2 8 8 C 1.52998 * 109.47348 * 179.72561 * 7 5 4 9 9 C 1.50696 * 109.46969 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00408 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99883 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99875 * 180.02562 * 11 9 8 13 13 Si 1.86795 * 119.99961 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46983 * 89.99938 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00008 * 13 11 9 16 16 H 1.48505 * 109.47256 * 330.00013 * 13 11 9 17 17 C 1.50696 * 109.47280 * 120.00287 * 2 1 3 18 18 C 1.38361 * 119.85007 * 79.72574 * 17 2 1 19 19 C 1.37938 * 120.15546 * 179.76430 * 18 17 2 20 20 C 1.39637 * 119.84316 * 0.50708 * 19 18 17 21 21 C 1.43206 * 120.15064 * 179.76512 * 20 19 18 22 22 N 6.84437 * 109.46568 * 120.00170 * 2 1 3 23 23 C 1.39626 * 119.70095 * 359.74505 * 20 19 18 24 24 C 1.37950 * 119.84721 * 0.02562 * 23 20 19 25 25 H 1.09007 * 109.47428 * 59.99827 * 1 2 3 26 26 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46922 * 299.99659 * 1 2 3 28 28 H 0.96998 * 119.99507 * 265.00350 * 4 2 1 29 29 H 1.09001 * 109.46564 * 299.73030 * 7 5 4 30 30 H 1.08998 * 109.47012 * 59.72084 * 7 5 4 31 31 H 1.09000 * 109.46986 * 300.00089 * 8 7 5 32 32 H 1.09002 * 109.46857 * 60.00224 * 8 7 5 33 33 H 0.96999 * 119.99804 * 180.02562 * 12 11 9 34 34 H 1.08006 * 119.91884 * 0.02562 * 18 17 2 35 35 H 1.07996 * 120.08296 * 180.22869 * 19 18 17 36 36 H 1.07999 * 120.08307 * 179.97438 * 23 20 19 37 37 H 1.07991 * 119.93094 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1469 -0.0182 -2.3572 6 8 1.8538 1.1574 -2.4129 7 6 2.6487 -0.7286 -3.5879 8 6 2.6937 0.2529 -4.7607 9 6 3.1961 -0.4575 -5.9911 10 1 3.4568 -1.5043 -5.9417 11 6 3.3229 0.2292 -7.1801 12 7 3.7609 -0.3909 -8.2540 13 14 2.8727 2.0400 -7.2654 14 1 4.0681 2.8627 -6.9498 15 1 2.3936 2.3671 -8.6324 16 1 1.7986 2.3300 -6.2818 17 6 2.0323 -0.7104 1.2304 18 6 2.0601 -2.0934 1.2640 19 6 2.5232 -2.7501 2.3851 20 6 2.9547 -2.0160 3.4918 21 6 3.4321 -2.6911 4.6610 22 7 3.8108 -3.2267 5.5885 23 6 2.9191 -0.6207 3.4531 24 6 2.4579 0.0232 2.3236 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2489 -1.6317 -1.1527 29 1 3.6498 -1.1169 -3.4003 30 1 1.9786 -1.5535 -3.8298 31 1 1.6926 0.6411 -4.9481 32 1 3.3640 1.0777 -4.5187 33 1 3.8505 0.0923 -9.0903 34 1 1.7223 -2.6599 0.4087 35 1 2.5478 -3.8295 2.4087 36 1 3.2509 -0.0469 4.3057 37 1 2.4302 1.1023 2.2921 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292366776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:01 Heat of formation + Delta-G solvation = -19.114415 kcal Electronic energy + Delta-G solvation = -19209.728637 eV Core-core repulsion = 16143.623051 eV Total energy + Delta-G solvation = -3066.105586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20046 -40.15808 -37.80831 -36.40831 -35.47191 -33.48951 -32.63087 -32.00349 -30.49095 -27.94566 -25.64209 -23.95670 -23.44836 -21.92846 -21.07564 -19.89670 -19.21839 -17.85927 -17.44505 -16.47635 -16.38638 -16.10576 -15.74387 -15.47831 -15.16016 -14.86570 -14.72134 -14.55974 -14.38394 -14.32919 -13.88088 -13.82164 -13.36353 -13.26658 -13.10364 -12.86723 -12.62856 -12.16159 -12.01691 -11.93067 -11.85681 -11.71918 -11.35881 -10.75288 -10.72085 -10.12595 -9.95964 -9.75549 -8.28675 -6.31251 -0.27127 0.40960 1.35907 1.38034 1.52656 1.59613 1.75444 1.87379 2.32031 2.37659 2.84258 2.89425 3.07387 3.56032 3.88386 3.98032 4.06059 4.30261 4.32082 4.43584 4.46593 4.55282 4.57124 4.74537 4.81713 4.96138 5.05571 5.09981 5.20573 5.32423 5.33248 5.38076 5.45808 5.50388 5.64664 5.67847 5.82831 6.26801 6.42345 6.63729 6.75922 7.34173 7.37609 8.86979 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034968 B = 0.003071 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.551161 B = 9114.810589 C = 9494.238236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.176 3.824 3 H 0.083 0.917 4 N -0.715 5.715 5 C 0.519 3.481 6 O -0.582 6.582 7 C -0.119 4.119 8 C 0.005 3.995 9 C -0.527 4.527 10 H 0.050 0.950 11 C 0.011 3.989 12 N -0.945 5.945 13 Si 0.939 3.061 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.259 1.259 17 C -0.059 4.059 18 C -0.115 4.115 19 C -0.059 4.059 20 C -0.043 4.043 21 C 0.280 3.720 22 N -0.469 5.469 23 C -0.060 4.060 24 C -0.111 4.111 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.414 0.586 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.010 0.990 32 H 0.008 0.992 33 H 0.266 0.734 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 -2.319 24.392 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.072 3.928 3 H 0.101 0.899 4 N -0.370 5.370 5 C 0.307 3.693 6 O -0.461 6.461 7 C -0.158 4.158 8 C -0.033 4.033 9 C -0.565 4.565 10 H 0.068 0.932 11 C -0.186 4.186 12 N -0.586 5.586 13 Si 0.763 3.237 14 H -0.195 1.195 15 H -0.206 1.206 16 H -0.183 1.183 17 C -0.060 4.060 18 C -0.133 4.133 19 C -0.079 4.079 20 C -0.047 4.047 21 C -0.034 4.034 22 N -0.145 5.145 23 C -0.081 4.081 24 C -0.129 4.129 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.253 0.747 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.029 0.971 32 H 0.027 0.973 33 H 0.075 0.925 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.413 -2.301 25.625 26.291 hybrid contribution 0.011 0.494 -0.910 1.036 sum -5.402 -1.807 24.715 25.363 Atomic orbital electron populations 1.22135 0.93328 1.03334 1.02492 1.19860 0.94899 0.96477 0.81561 0.89859 1.46073 1.67631 1.14681 1.08570 1.21101 0.76056 0.86798 0.85354 1.90645 1.51481 1.18290 1.85721 1.21506 1.03430 0.99673 0.91217 1.19221 0.96202 0.95081 0.92844 1.21462 1.43160 0.97726 0.94196 0.93160 1.25827 0.94694 1.02657 0.95444 1.70029 1.48487 1.38601 1.01471 0.85821 0.79691 0.80652 0.77500 1.19465 1.20617 1.18315 1.20153 0.96768 0.94463 0.94639 1.21078 0.99871 0.93351 0.98968 1.21339 0.94626 1.01148 0.90775 1.16129 1.06108 0.93119 0.89338 1.25981 0.92299 0.92483 0.92681 1.81298 1.11030 1.09859 1.12318 1.21326 0.96048 0.91832 0.98868 1.21132 0.98333 1.01412 0.92030 0.93945 0.90733 0.89822 0.74731 0.88027 0.87849 0.97125 0.97332 0.92467 0.83073 0.83067 0.83203 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.46 71.98 0.68 -1.80 16 2 C 0.18 3.02 2.77 44.24 0.12 3.14 16 3 H 0.08 1.75 7.43 -2.39 -0.02 1.73 16 4 N -0.72 -14.54 5.02 -446.10 -2.24 -16.78 16 5 C 0.52 16.37 7.79 87.66 0.68 17.05 16 6 O -0.58 -23.42 15.65 -3.04 -0.05 -23.46 16 7 C -0.12 -4.14 5.64 29.85 0.17 -3.97 16 8 C 0.00 0.22 3.33 29.85 0.10 0.32 16 9 C -0.53 -29.74 9.66 25.60 0.25 -29.49 16 10 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 11 C 0.01 0.66 5.47 84.66 0.46 1.12 16 12 N -0.95 -58.61 13.96 21.45 0.30 -58.31 16 13 Si 0.94 46.00 27.47 68.60 1.88 47.88 16 14 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 15 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.26 -12.51 6.54 99.48 0.65 -11.86 16 17 C -0.06 -0.69 4.96 -19.81 -0.10 -0.79 16 18 C -0.11 -1.04 9.03 22.23 0.20 -0.83 16 19 C -0.06 -0.52 9.76 22.54 0.22 -0.30 16 20 C -0.04 -0.49 5.73 -21.36 -0.12 -0.61 16 21 C 0.28 4.50 15.33 88.33 1.35 5.86 16 22 N -0.47 -10.26 18.54 19.01 0.35 -9.91 16 23 C -0.06 -0.56 9.76 22.54 0.22 -0.34 16 24 C -0.11 -1.10 9.65 22.23 0.21 -0.89 16 25 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.41 5.77 6.87 -92.71 -0.64 5.13 16 29 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 30 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 31 H 0.01 0.52 7.16 -2.39 -0.02 0.51 16 32 H 0.01 0.41 7.53 -2.39 -0.02 0.40 16 33 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.15 0.85 6.92 -2.91 -0.02 0.83 16 35 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 36 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 37 H 0.15 1.11 8.03 -2.92 -0.02 1.09 16 Total: -1.00 -75.40 326.79 5.09 -70.31 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: 0.39 Total: 1.81 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 4.45 Total: -11.53 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -1.59 Total: -85.00 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.46 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.88 Total: 47.88 kcal Total: -75.40 5.09 -70.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292366776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.195 kcal (2) G-P(sol) polarization free energy of solvation -75.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds