Wall clock time and date at job start Mon Mar 30 2020 01:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.50695 * 109.47390 * 89.99689 * 3 2 1 5 5 C 1.38366 * 119.84941 * 269.72536 * 4 3 2 6 6 C 1.37948 * 120.15206 * 179.76343 * 5 4 3 7 7 C 1.39633 * 119.84356 * 0.53114 * 6 5 4 8 8 C 1.43206 * 120.14792 * 179.70196 * 7 6 5 9 9 N 7.46239 * 104.55046 * 63.27599 * 2 1 3 10 10 C 1.39624 * 119.70305 * 359.72395 * 7 6 5 11 11 C 1.37947 * 119.84730 * 0.02562 * 10 7 6 12 12 C 1.34771 * 120.00084 * 179.97438 * 2 1 3 13 13 O 1.21283 * 120.00062 * 180.02562 * 12 2 1 14 14 C 1.50700 * 120.00216 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.47172 * 179.97438 * 14 12 2 16 16 C 1.50706 * 109.46844 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00404 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99867 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99793 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00291 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46877 * 59.99532 * 20 18 16 22 22 H 1.48493 * 109.47305 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46806 * 300.00152 * 20 18 16 24 24 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 25 25 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 26 26 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 27 27 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 28 28 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 29 29 H 1.07997 * 119.92130 * 359.97438 * 5 4 3 30 30 H 1.08005 * 120.07829 * 180.25239 * 6 5 4 31 31 H 1.08000 * 120.08306 * 179.97438 * 10 7 6 32 32 H 1.07998 * 119.92797 * 180.02562 * 11 10 7 33 33 H 1.09000 * 109.47357 * 300.00116 * 14 12 2 34 34 H 1.08998 * 109.46869 * 60.00030 * 14 12 2 35 35 H 1.09000 * 109.47535 * 299.99991 * 15 14 12 36 36 H 1.08998 * 109.47172 * 60.00248 * 15 14 12 37 37 H 0.97006 * 120.00061 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4207 5 6 1.5267 2.5074 2.0680 6 6 1.7479 2.9054 3.3702 7 6 2.9107 2.5045 4.0313 8 6 3.1500 2.9192 5.3810 9 7 3.3399 3.2482 6.4515 10 6 3.8393 1.6981 3.3703 11 6 3.6030 1.3031 2.0699 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 6 2.3798 -3.6352 0.0005 16 6 1.6263 -4.9403 -0.0001 17 1 0.5463 -4.9404 -0.0001 18 6 2.3157 -6.1344 0.0003 19 7 3.6308 -6.1343 0.0008 20 14 1.3818 -7.7521 -0.0012 21 1 0.5293 -7.8304 -1.2146 22 1 2.3468 -8.8808 -0.0011 23 1 0.5267 -7.8311 1.2103 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1499 1.1384 -0.5139 28 1 1.6084 2.0284 -0.5139 29 1 0.6303 2.8209 1.5537 30 1 1.0256 3.5293 3.8757 31 1 4.7409 1.3848 3.8757 32 1 4.3201 0.6790 1.5576 33 1 0.7585 -2.5299 0.8903 34 1 0.7592 -2.5302 -0.8897 35 1 3.0065 -3.5775 -0.8894 36 1 3.0064 -3.5774 0.8905 37 1 4.1159 -6.9744 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292583555.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:51 Heat of formation + Delta-G solvation = 9.896103 kcal Electronic energy + Delta-G solvation = -19557.497415 eV Core-core repulsion = 16492.649820 eV Total energy + Delta-G solvation = -3064.847595 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.11571 -39.03127 -36.72109 -35.35221 -33.54474 -32.33284 -31.30678 -30.83588 -27.83262 -26.43789 -25.12248 -22.97098 -22.74839 -21.17247 -19.12085 -18.62326 -16.99062 -16.33042 -15.96316 -15.88437 -15.34473 -14.95788 -14.60953 -14.43122 -14.19510 -13.73875 -13.46451 -13.14543 -13.00549 -12.95651 -12.51385 -12.33596 -12.20170 -12.15874 -11.89994 -11.71517 -11.20478 -11.12683 -10.92206 -10.62127 -9.96716 -9.65756 -9.33836 -9.23625 -9.13756 -8.86298 -8.54487 -8.32833 -5.97314 -4.01754 0.50538 1.13675 2.45301 2.66825 3.15107 3.29888 3.33534 3.38674 3.40257 3.66552 3.74865 4.45854 4.52548 4.63538 4.64939 4.94800 5.10554 5.13420 5.30006 5.37712 5.40273 5.50538 5.52985 5.67526 5.72327 5.82000 5.97040 6.09932 6.19212 6.20714 6.36585 6.60235 6.63961 6.85838 7.26196 7.63783 7.72501 7.84364 8.05366 8.36684 8.67167 9.06343 9.61867 11.13528 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021526 B = 0.003672 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.417613 B = 7623.456461 C = 8224.563509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.626 5.626 3 C 0.148 3.852 4 C -0.071 4.071 5 C -0.111 4.111 6 C -0.075 4.075 7 C -0.035 4.035 8 C 0.259 3.741 9 N -0.424 5.424 10 C -0.070 4.070 11 C -0.094 4.094 12 C 0.513 3.487 13 O -0.529 6.529 14 C -0.128 4.128 15 C 0.038 3.962 16 C -0.528 4.528 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.143 0.857 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 19.193 0.955 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.361 5.361 3 C 0.025 3.975 4 C -0.073 4.073 5 C -0.130 4.130 6 C -0.095 4.095 7 C -0.038 4.038 8 C -0.057 4.057 9 N -0.100 5.100 10 C -0.090 4.090 11 C -0.113 4.113 12 C 0.303 3.697 13 O -0.404 6.404 14 C -0.168 4.168 15 C 0.000 4.000 16 C -0.567 4.567 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.103 0.897 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.486 19.554 2.596 20.475 hybrid contribution -0.682 -1.042 -0.300 1.281 sum -6.169 18.512 2.296 19.648 Atomic orbital electron populations 1.21771 0.79617 1.03168 1.01694 1.48106 1.06820 1.05309 1.75911 1.20346 0.99231 0.86092 0.91807 1.20641 0.93969 0.95238 0.97481 1.20971 0.99285 0.98440 0.94268 1.21096 0.95275 0.98581 0.94585 1.16027 0.97837 1.03121 0.86831 1.25778 0.93601 0.93457 0.92821 1.81243 1.07915 1.09114 1.11702 1.21244 0.98212 0.94947 0.94618 1.21286 0.97675 0.98283 0.94030 1.21626 0.88490 0.85482 0.74088 1.90640 1.14327 1.87171 1.48298 1.21893 1.00734 0.91865 1.02287 1.18895 0.93153 0.89359 0.98555 1.21179 0.92872 0.91042 1.51560 0.92700 1.25015 0.94820 0.99195 0.95280 1.69983 1.06044 1.26708 1.50072 0.86661 0.79567 0.83215 0.78546 1.20251 1.21286 1.20248 0.92684 0.90419 0.91681 0.88694 0.89733 0.85100 0.85147 0.84922 0.83918 0.90273 0.90262 0.95852 0.95872 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.24 59.85 0.61 1.35 16 2 N -0.63 -7.93 2.86 -182.95 -0.52 -8.45 16 3 C 0.15 1.53 5.52 -5.20 -0.03 1.50 16 4 C -0.07 -0.71 5.47 -104.53 -0.57 -1.29 16 5 C -0.11 -0.87 9.68 -39.64 -0.38 -1.26 16 6 C -0.07 -0.61 9.76 -39.17 -0.38 -0.99 16 7 C -0.03 -0.34 5.73 -106.93 -0.61 -0.95 16 8 C 0.26 2.94 15.33 -22.47 -0.34 2.60 16 9 N -0.42 -5.74 18.54 41.83 0.78 -4.97 16 10 C -0.07 -0.72 9.76 -39.17 -0.38 -1.10 16 11 C -0.09 -1.07 9.68 -39.64 -0.38 -1.45 16 12 C 0.51 9.13 7.67 -10.99 -0.08 9.05 16 13 O -0.53 -11.29 15.07 5.55 0.08 -11.20 16 14 C -0.13 -2.48 4.19 -27.88 -0.12 -2.60 16 15 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 16 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 20 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.75 6.44 -51.93 -0.33 0.41 16 26 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 27 H 0.09 1.12 7.36 -51.93 -0.38 0.74 16 28 H 0.08 0.60 8.01 -51.93 -0.42 0.19 16 29 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.14 1.84 7.56 -52.49 -0.40 1.44 16 33 H 0.08 1.42 7.40 -51.93 -0.38 1.03 16 34 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 35 H 0.02 0.67 8.10 -51.93 -0.42 0.24 16 36 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -33.97 329.98 -7.01 -40.98 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -4.83 Total: -3.69 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -3.21 Total: -7.70 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.99 Total: -39.72 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.97 -7.01 -40.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292583555.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.875 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds