Wall clock time and date at job start Mon Mar 30 2020 01:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.50695 * 109.47390 * 89.99689 * 3 2 1 5 5 C 1.38366 * 119.84941 * 269.72536 * 4 3 2 6 6 C 1.37948 * 120.15206 * 179.76343 * 5 4 3 7 7 C 1.39633 * 119.84356 * 0.53114 * 6 5 4 8 8 C 1.43206 * 120.14792 * 179.70196 * 7 6 5 9 9 N 7.46239 * 104.55046 * 63.27599 * 2 1 3 10 10 C 1.39624 * 119.70305 * 359.72395 * 7 6 5 11 11 C 1.37947 * 119.84730 * 0.02562 * 10 7 6 12 12 C 1.34771 * 120.00084 * 179.97438 * 2 1 3 13 13 O 1.21283 * 120.00062 * 180.02562 * 12 2 1 14 14 C 1.50700 * 120.00216 * 0.02562 * 12 2 1 15 15 C 1.52999 * 109.47172 * 179.97438 * 14 12 2 16 16 C 1.50706 * 109.46844 * 180.02562 * 15 14 12 17 17 H 1.07992 * 120.00404 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99867 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99793 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00291 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46877 * 59.99532 * 20 18 16 22 22 H 1.48493 * 109.47305 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46806 * 300.00152 * 20 18 16 24 24 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 25 25 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 26 26 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 27 27 H 1.09001 * 109.47057 * 210.00204 * 3 2 1 28 28 H 1.08999 * 109.47333 * 329.99764 * 3 2 1 29 29 H 1.07997 * 119.92130 * 359.97438 * 5 4 3 30 30 H 1.08005 * 120.07829 * 180.25239 * 6 5 4 31 31 H 1.08000 * 120.08306 * 179.97438 * 10 7 6 32 32 H 1.07998 * 119.92797 * 180.02562 * 11 10 7 33 33 H 1.09000 * 109.47357 * 300.00116 * 14 12 2 34 34 H 1.08998 * 109.46869 * 60.00030 * 14 12 2 35 35 H 1.09000 * 109.47535 * 299.99991 * 15 14 12 36 36 H 1.08998 * 109.47172 * 60.00248 * 15 14 12 37 37 H 0.97006 * 120.00061 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 1.4207 5 6 1.5267 2.5074 2.0680 6 6 1.7479 2.9054 3.3702 7 6 2.9107 2.5045 4.0313 8 6 3.1500 2.9192 5.3810 9 7 3.3399 3.2482 6.4515 10 6 3.8393 1.6981 3.3703 11 6 3.6030 1.3031 2.0699 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 6 2.3798 -3.6352 0.0005 16 6 1.6263 -4.9403 -0.0001 17 1 0.5463 -4.9404 -0.0001 18 6 2.3157 -6.1344 0.0003 19 7 3.6308 -6.1343 0.0008 20 14 1.3818 -7.7521 -0.0012 21 1 0.5293 -7.8304 -1.2146 22 1 2.3468 -8.8808 -0.0011 23 1 0.5267 -7.8311 1.2103 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.1499 1.1384 -0.5139 28 1 1.6084 2.0284 -0.5139 29 1 0.6303 2.8209 1.5537 30 1 1.0256 3.5293 3.8757 31 1 4.7409 1.3848 3.8757 32 1 4.3201 0.6790 1.5576 33 1 0.7585 -2.5299 0.8903 34 1 0.7592 -2.5302 -0.8897 35 1 3.0065 -3.5775 -0.8894 36 1 3.0064 -3.5774 0.8905 37 1 4.1159 -6.9744 0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292583555.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:50 Heat of formation + Delta-G solvation = -10.618854 kcal Electronic energy + Delta-G solvation = -19558.387010 eV Core-core repulsion = 16492.649820 eV Total energy + Delta-G solvation = -3065.737191 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11891 -40.09855 -37.69617 -36.47667 -35.55544 -33.48740 -32.49442 -32.03471 -28.83459 -27.80169 -26.53040 -24.02503 -23.68812 -22.68391 -19.92295 -19.91195 -18.73831 -17.52182 -17.22947 -16.96694 -16.43723 -16.33668 -16.01828 -15.48789 -15.11300 -14.69442 -14.53184 -14.42794 -14.13744 -14.00227 -13.84713 -13.61362 -13.27386 -13.20066 -13.05829 -12.78095 -12.73752 -12.52547 -12.45478 -11.94275 -11.85923 -11.53568 -11.28750 -10.67117 -10.53681 -9.95871 -9.81918 -9.56237 -8.15964 -6.29749 -0.28955 0.41445 1.43283 1.47483 1.54984 1.55129 1.74593 1.82948 2.29357 2.45777 2.81902 2.94086 3.17056 3.78465 3.84794 3.96478 4.00509 4.32950 4.40665 4.44282 4.53103 4.58420 4.66051 4.73650 4.82898 4.93656 5.02471 5.07875 5.17830 5.24759 5.33543 5.51276 5.60205 5.67259 5.70607 5.87262 5.88417 6.20496 6.37689 6.46475 6.89147 7.35662 7.40839 8.96293 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021526 B = 0.003672 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.417613 B = 7623.456461 C = 8224.563509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.612 5.612 3 C 0.146 3.854 4 C -0.076 4.076 5 C -0.095 4.095 6 C -0.062 4.062 7 C -0.042 4.042 8 C 0.280 3.720 9 N -0.466 5.466 10 C -0.077 4.077 11 C -0.117 4.117 12 C 0.508 3.492 13 O -0.581 6.581 14 C -0.117 4.117 15 C 0.044 3.956 16 C -0.543 4.543 17 H 0.075 0.925 18 C -0.006 4.006 19 N -0.937 5.937 20 Si 0.971 3.029 21 H -0.261 1.261 22 H -0.289 1.289 23 H -0.263 1.263 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.132 0.868 29 H 0.174 0.826 30 H 0.161 0.839 31 H 0.132 0.868 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.101 0.899 35 H -0.018 1.018 36 H -0.020 1.020 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.654 20.582 0.595 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.345 5.345 3 C 0.024 3.976 4 C -0.078 4.078 5 C -0.113 4.113 6 C -0.082 4.082 7 C -0.046 4.046 8 C -0.034 4.034 9 N -0.142 5.142 10 C -0.098 4.098 11 C -0.136 4.136 12 C 0.298 3.702 13 O -0.460 6.460 14 C -0.156 4.156 15 C 0.007 3.993 16 C -0.581 4.581 17 H 0.093 0.907 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.795 3.205 21 H -0.186 1.186 22 H -0.215 1.215 23 H -0.188 1.188 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.088 0.912 28 H 0.150 0.850 29 H 0.191 0.809 30 H 0.178 0.822 31 H 0.149 0.851 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.000 1.000 36 H -0.002 1.002 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.604 20.994 2.235 23.194 hybrid contribution 0.579 -1.395 -0.220 1.526 sum -9.025 19.599 2.015 21.671 Atomic orbital electron populations 1.22137 0.76674 1.04938 1.03466 1.48015 1.08553 1.04421 1.73490 1.20565 0.98931 0.85736 0.92388 1.20682 0.93966 0.95868 0.97308 1.21325 0.99594 0.96535 0.93877 1.21472 0.94527 0.97609 0.94626 1.16098 0.98757 1.03595 0.86155 1.25947 0.92394 0.92306 0.92761 1.81263 1.09273 1.10731 1.12950 1.21225 0.98716 0.95423 0.94400 1.21164 0.98530 0.99260 0.94653 1.21306 0.87746 0.86734 0.74418 1.90632 1.16372 1.87998 1.51018 1.21625 0.99239 0.90547 1.04214 1.18667 0.93681 0.92468 0.94521 1.21704 0.93973 0.91714 1.50720 0.90668 1.26117 0.95693 1.03867 0.94706 1.70171 1.08281 1.27785 1.51513 0.85409 0.78091 0.77492 0.79486 1.18606 1.21481 1.18752 0.90873 0.90907 0.87779 0.91168 0.85020 0.80893 0.82155 0.85054 0.86898 0.88322 0.88110 1.00003 1.00168 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 10.24 127.77 1.31 2.25 16 2 N -0.61 -14.14 2.86 -851.13 -2.43 -16.57 16 3 C 0.15 2.67 5.52 85.63 0.47 3.15 16 4 C -0.08 -1.37 5.47 -19.80 -0.11 -1.48 16 5 C -0.10 -1.05 9.68 22.23 0.22 -0.84 16 6 C -0.06 -0.76 9.76 22.54 0.22 -0.54 16 7 C -0.04 -0.77 5.73 -21.36 -0.12 -0.89 16 8 C 0.28 6.14 15.33 88.33 1.35 7.49 16 9 N -0.47 -12.46 18.54 19.00 0.35 -12.11 16 10 C -0.08 -1.62 9.76 22.54 0.22 -1.40 16 11 C -0.12 -2.76 9.68 22.23 0.22 -2.54 16 12 C 0.51 18.31 7.67 87.66 0.67 18.99 16 13 O -0.58 -26.46 15.07 -3.04 -0.05 -26.51 16 14 C -0.12 -4.51 4.19 29.85 0.13 -4.39 16 15 C 0.04 2.43 4.26 29.85 0.13 2.55 16 16 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 17 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 18 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 19 N -0.94 -59.26 13.29 21.45 0.28 -58.98 16 20 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 21 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 1.11 6.44 -2.38 -0.02 1.09 16 26 H 0.10 0.65 8.07 -2.39 -0.02 0.64 16 27 H 0.07 1.67 7.36 -2.39 -0.02 1.66 16 28 H 0.13 1.21 8.01 -2.39 -0.02 1.19 16 29 H 0.17 0.53 8.06 -2.91 -0.02 0.50 16 30 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 31 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 32 H 0.11 3.30 7.56 -2.91 -0.02 3.28 16 33 H 0.10 3.40 7.40 -2.39 -0.02 3.38 16 34 H 0.10 3.43 8.11 -2.39 -0.02 3.41 16 35 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 36 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 37 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 Total: -1.00 -80.26 329.98 6.65 -73.61 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.07 Total: 2.53 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 5.40 Total: -7.90 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -1.79 Total: -87.65 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.05 Total: -26.51 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -80.26 6.65 -73.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292583555.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.989 kcal (2) G-P(sol) polarization free energy of solvation -80.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds