Wall clock time and date at job start Mon Mar 30 2020 01:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46974 * 1.23280 * 3 2 1 5 5 C 1.37093 * 119.99642 * 263.43692 * 4 3 2 6 6 H 1.08004 * 120.00331 * 202.98127 * 5 4 3 7 7 C 1.38949 * 120.00044 * 22.98623 * 5 4 3 8 8 N 1.31411 * 120.00110 * 4.10455 * 7 5 4 9 9 Si 1.86805 * 120.00035 * 184.10794 * 7 5 4 10 10 H 1.48494 * 109.47522 * 89.99499 * 9 7 5 11 11 H 1.48501 * 109.47036 * 210.00041 * 9 7 5 12 12 H 1.48508 * 109.46723 * 329.99778 * 9 7 5 13 13 C 1.34775 * 120.00041 * 83.44203 * 4 3 2 14 14 O 1.21296 * 120.00088 * 3.15003 * 13 4 3 15 15 C 1.50697 * 119.99731 * 183.14570 * 13 4 3 16 16 C 1.47202 * 115.55383 * 63.10975 * 15 13 4 17 17 N 5.23117 * 99.93988 * 0.17058 * 2 1 3 18 18 C 1.53092 * 117.51084 * 208.82164 * 15 13 4 19 19 C 1.52551 * 117.51361 * 277.38349 * 15 13 4 20 20 C 1.53870 * 120.82423 * 142.33775 * 19 15 13 21 21 C 1.54998 * 104.05945 * 192.36150 * 20 19 15 22 22 C 1.54917 * 102.82254 * 37.56661 * 21 20 19 23 23 C 1.53482 * 121.08990 * 2.96751 * 19 15 13 24 24 H 4.40645 * 5.51424 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.46463 * 121.22622 * 3 2 1 26 26 H 1.08998 * 109.47031 * 241.22923 * 3 2 1 27 27 H 0.97000 * 119.99806 * 180.02562 * 8 7 5 28 28 H 1.09000 * 117.51194 * 214.92285 * 18 15 13 29 29 H 1.08999 * 117.50597 * 0.02562 * 18 15 13 30 30 H 1.08998 * 110.51349 * 311.00188 * 20 19 15 31 31 H 1.08991 * 110.51522 * 73.71748 * 20 19 15 32 32 H 1.08999 * 110.74043 * 279.23149 * 21 20 19 33 33 H 1.09007 * 110.74071 * 155.90211 * 21 20 19 34 34 H 1.08994 * 110.48568 * 203.59175 * 22 21 20 35 35 H 1.09007 * 110.47943 * 80.96278 * 22 21 20 36 36 H 1.09006 * 110.07217 * 263.31380 * 23 19 15 37 37 H 1.09002 * 110.06986 * 24.84027 * 23 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3801 -0.0297 5 6 3.4916 -2.0061 1.1366 6 1 4.1766 -2.8408 1.1139 7 6 2.9718 -1.5668 2.3480 8 7 2.0771 -0.6046 2.3688 9 14 3.5449 -2.3440 3.9471 10 1 4.7208 -1.5999 4.4656 11 1 2.4463 -2.2911 4.9448 12 1 3.9234 -3.7590 3.7020 13 6 3.2342 -2.0347 -1.2036 14 8 2.9733 -1.4627 -2.2409 15 6 3.6694 -3.4773 -1.2274 16 6 2.7720 -4.4226 -0.5433 17 7 2.0770 -5.1526 -0.0153 18 6 4.4008 -3.9747 -2.4769 19 6 5.1670 -3.7625 -1.1733 20 6 5.7132 -4.9605 -0.3770 21 6 7.2407 -4.7055 -0.3135 22 6 7.3258 -3.1682 -0.1420 23 6 6.1860 -2.6238 -1.0297 24 1 -1.0498 -0.0004 0.0002 25 1 3.0090 0.5336 -0.8788 26 1 3.0091 0.4954 0.9008 27 1 1.7145 -0.2977 3.2145 28 1 4.2179 -5.0021 -2.7918 29 1 4.5675 -3.2584 -3.2813 30 1 5.2870 -4.9786 0.6261 31 1 5.5032 -5.8939 -0.8991 32 1 7.7231 -5.0179 -1.2396 33 1 7.6818 -5.2146 0.5436 34 1 8.2901 -2.7983 -0.4901 35 1 7.1634 -2.8910 0.8997 36 1 6.5753 -2.3445 -2.0088 37 1 5.7192 -1.7621 -0.5526 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296296822.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:30 Heat of formation + Delta-G solvation = 65.300668 kcal Electronic energy + Delta-G solvation = -21474.896404 eV Core-core repulsion = 18412.451331 eV Total energy + Delta-G solvation = -3062.445073 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61045 -39.33639 -37.24269 -37.10560 -34.96020 -33.79223 -33.21938 -29.62261 -28.78199 -27.26850 -26.36478 -24.99421 -22.13649 -21.13446 -20.27668 -20.01027 -19.09115 -18.04887 -17.30099 -16.45408 -16.29391 -16.20019 -15.72962 -15.15887 -15.05784 -14.51288 -14.30153 -14.20560 -13.92189 -13.71540 -13.62495 -13.35152 -13.25611 -13.07214 -12.86114 -12.54111 -12.25371 -11.99328 -11.85698 -11.76998 -11.37507 -11.32757 -11.23563 -11.16939 -10.87554 -10.59999 -10.31139 -9.86549 -8.28426 -6.00252 1.25814 1.39014 1.45341 1.49632 1.58104 1.93292 1.99565 2.27268 2.38137 2.79893 2.81784 2.99361 3.15095 3.62500 3.79904 3.85865 3.91040 3.96407 4.27459 4.38855 4.62480 4.65717 4.77051 4.80567 4.86085 4.90343 5.04700 5.07489 5.08452 5.19882 5.31771 5.34273 5.38475 5.42236 5.48788 5.61473 5.73851 6.35420 6.52341 7.04902 7.09411 7.44332 7.83239 8.68189 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.015012 B = 0.009393 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.726016 B = 2980.172881 C = 3733.602551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.138 4.138 3 C 0.241 3.759 4 N -0.433 5.433 5 C -0.335 4.335 6 H 0.107 0.893 7 C 0.001 3.999 8 N -0.882 5.882 9 Si 0.971 3.029 10 H -0.258 1.258 11 H -0.291 1.291 12 H -0.270 1.270 13 C 0.498 3.502 14 O -0.613 6.613 15 C -0.077 4.077 16 C 0.279 3.721 17 N -0.473 5.473 18 C -0.094 4.094 19 C -0.065 4.065 20 C -0.097 4.097 21 C -0.108 4.108 22 C -0.118 4.118 23 C -0.095 4.095 24 H 0.230 0.770 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.269 0.731 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.443 -4.540 -4.065 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.139 4.139 3 C 0.119 3.881 4 N -0.149 5.149 5 C -0.463 4.463 6 H 0.125 0.875 7 C -0.203 4.203 8 N -0.519 5.519 9 Si 0.795 3.205 10 H -0.182 1.182 11 H -0.217 1.217 12 H -0.195 1.195 13 C 0.285 3.715 14 O -0.500 6.500 15 C -0.083 4.083 16 C -0.037 4.037 17 N -0.149 5.149 18 C -0.132 4.132 19 C -0.067 4.067 20 C -0.134 4.134 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.132 4.132 24 H 0.247 0.753 25 H 0.086 0.914 26 H 0.131 0.869 27 H 0.079 0.921 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.167 -5.216 -3.566 11.970 hybrid contribution -0.755 0.330 1.113 1.385 sum 9.412 -4.887 -2.453 10.885 Atomic orbital electron populations 1.25109 0.96474 1.00979 1.06337 1.23652 0.95330 0.99378 0.95585 1.18201 0.84064 0.84363 1.01515 1.43766 1.54381 1.10843 1.05933 1.19826 1.26604 1.16587 0.83238 0.87546 1.26030 0.95069 0.96946 1.02207 1.70099 1.26851 1.27600 1.27386 0.85242 0.78168 0.78972 0.78106 1.18223 1.21671 1.19490 1.19021 0.82547 0.86318 0.83606 1.90540 1.57005 1.68989 1.33422 1.18272 0.94058 0.89434 1.06580 1.27574 0.92451 0.92045 0.91620 1.81154 1.10272 1.12838 1.10685 1.23484 0.95847 1.03909 0.89958 1.22192 0.86221 0.99345 0.98930 1.22056 0.97385 0.95457 0.98550 1.22447 0.93372 0.95520 1.03201 1.22339 0.98029 0.95948 0.99236 1.21769 0.94533 0.95574 1.01373 0.75290 0.91392 0.86922 0.92105 0.85129 0.85825 0.93011 0.89879 0.89065 0.90361 0.89313 0.92519 0.89487 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.43 19.25 74.32 1.43 -11.00 16 2 C -0.14 -6.91 11.58 31.13 0.36 -6.55 16 3 C 0.24 11.65 5.07 84.57 0.43 12.08 16 4 N -0.43 -21.02 2.43 -645.40 -1.57 -22.59 16 5 C -0.34 -16.19 7.95 84.04 0.67 -15.52 16 6 H 0.11 4.93 6.16 -2.91 -0.02 4.91 16 7 C 0.00 0.03 5.23 84.93 0.44 0.47 16 8 N -0.88 -45.34 8.87 21.66 0.19 -45.15 16 9 Si 0.97 40.03 29.55 68.60 2.03 42.06 16 10 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 13 C 0.50 23.04 5.64 87.66 0.49 23.53 16 14 O -0.61 -30.76 16.31 -3.08 -0.05 -30.81 16 15 C -0.08 -2.93 1.33 -54.85 -0.07 -3.00 16 16 C 0.28 11.85 13.07 89.42 1.17 13.02 16 17 N -0.47 -21.44 18.55 20.03 0.37 -21.07 16 18 C -0.09 -2.61 9.44 30.52 0.29 -2.32 16 19 C -0.06 -1.88 1.79 -51.98 -0.09 -1.97 16 20 C -0.10 -2.43 5.81 31.57 0.18 -2.24 16 21 C -0.11 -2.03 6.91 31.93 0.22 -1.81 16 22 C -0.12 -2.57 6.84 31.72 0.22 -2.35 16 23 C -0.10 -2.60 6.19 31.23 0.19 -2.41 16 24 H 0.23 8.43 7.80 -4.43 -0.03 8.40 16 25 H 0.07 3.14 7.58 -2.39 -0.02 3.12 16 26 H 0.11 5.55 6.23 -2.39 -0.01 5.54 16 27 H 0.27 13.40 8.31 -92.71 -0.77 12.62 16 28 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.12 3.35 7.96 -2.39 -0.02 3.33 16 30 H 0.05 1.55 8.08 -2.39 -0.02 1.53 16 31 H 0.08 1.80 8.11 -2.39 -0.02 1.78 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.05 1.83 6.70 -2.39 -0.02 1.82 16 Total: -1.00 -63.41 318.92 7.98 -55.43 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 1.07 Total: 22.21 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 5.93 Total: -0.08 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -1.00 Total: -88.81 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.05 Total: -30.81 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -63.41 7.98 -55.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296296822.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.730 kcal (2) G-P(sol) polarization free energy of solvation -63.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds