Wall clock time and date at job start Mon Mar 30 2020 01:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47554 * 2 1 4 4 N 1.46901 * 109.46688 * 119.99665 * 2 1 3 5 5 C 1.46898 * 111.00564 * 274.99787 * 4 2 1 6 6 C 1.50696 * 109.47538 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00014 * 359.97438 * 6 5 4 8 8 C 1.37872 * 119.99934 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00313 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99954 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46925 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47332 * 119.99542 * 10 8 6 13 13 H 1.48501 * 109.47247 * 239.99759 * 10 8 6 14 14 C 1.50696 * 109.47140 * 239.99591 * 2 1 3 15 15 N 1.30356 * 125.48267 * 285.04700 * 14 2 1 16 16 C 1.34143 * 108.90502 * 179.69532 * 15 14 2 17 17 C 1.35774 * 107.51108 * 0.42816 * 16 15 14 18 18 C 1.47825 * 126.58072 * 179.84423 * 17 16 15 19 19 C 1.39575 * 120.14520 * 359.68675 * 18 17 16 20 20 C 1.37955 * 119.85214 * 179.97438 * 19 18 17 21 21 C 1.38355 * 120.14733 * 359.97438 * 20 19 18 22 22 C 1.38355 * 120.29228 * 0.02562 * 21 20 19 23 23 C 1.37961 * 120.14611 * 0.02562 * 22 21 20 24 24 O 1.33997 * 125.48279 * 104.99945 * 14 2 1 25 25 H 1.08994 * 109.47094 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46944 * 300.00515 * 1 2 3 27 27 H 1.08995 * 109.47196 * 59.99921 * 1 2 3 28 28 H 1.00911 * 110.99641 * 151.04187 * 4 2 1 29 29 H 1.09003 * 109.46998 * 300.00753 * 5 4 2 30 30 H 1.08998 * 109.47068 * 59.99995 * 5 4 2 31 31 H 0.96997 * 119.99957 * 180.02562 * 9 8 6 32 32 H 1.07998 * 126.24111 * 180.29038 * 16 15 14 33 33 H 1.08000 * 120.07366 * 359.97438 * 19 18 17 34 34 H 1.08004 * 119.92815 * 180.02562 * 20 19 18 35 35 H 1.08006 * 119.85810 * 179.72340 * 21 20 19 36 36 H 1.08003 * 119.93013 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.07314 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0825 0.2226 2.3470 6 6 2.5884 -0.5215 3.5558 7 1 2.8379 -1.5695 3.4795 8 6 2.7318 0.1354 4.7595 9 7 2.4275 1.4114 4.8526 10 14 3.3582 -0.7871 6.2582 11 1 3.6266 -2.2011 5.8925 12 1 4.6116 -0.1538 6.7411 13 1 2.3340 -0.7399 7.3324 14 6 2.0324 -0.7105 -1.2304 15 7 2.0248 -2.0009 -1.4151 16 6 2.5409 -2.2699 -2.6237 17 6 2.8855 -1.0867 -3.1934 18 6 3.4958 -0.8952 -4.5261 19 6 3.7796 -1.9988 -5.3322 20 6 4.3488 -1.8131 -6.5750 21 6 4.6377 -0.5365 -7.0233 22 6 4.3589 0.5617 -6.2292 23 6 3.7908 0.3899 -4.9838 24 8 2.5579 -0.1174 -2.3109 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 2.9173 -1.1206 1.0288 29 1 2.7589 1.0462 2.1183 30 1 1.0871 0.6164 2.5526 31 1 2.5287 1.8736 5.6994 32 1 2.6624 -3.2493 -3.0624 33 1 3.5542 -2.9958 -4.9836 34 1 4.5685 -2.6661 -7.2000 35 1 5.0874 -0.3968 -7.9953 36 1 4.5865 1.5557 -6.5851 37 1 3.5733 1.2480 -4.3652 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299212933.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:27 Heat of formation + Delta-G solvation = 23.558557 kcal Electronic energy + Delta-G solvation = -19431.743438 eV Core-core repulsion = 16367.488291 eV Total energy + Delta-G solvation = -3064.255147 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.42411 -39.97554 -38.05558 -35.86585 -34.94971 -33.48803 -31.94178 -31.79072 -29.14368 -28.19080 -25.42197 -24.58530 -23.77907 -23.03347 -22.12825 -21.48548 -19.13425 -18.49454 -17.81698 -17.46116 -16.80224 -16.74284 -16.49974 -15.83348 -15.25522 -15.01040 -14.86733 -14.38679 -14.30550 -14.17454 -13.92023 -13.71375 -13.36202 -13.14573 -12.79910 -12.57317 -12.43071 -12.41470 -12.30266 -12.05538 -12.02786 -11.55924 -11.34446 -10.85346 -10.67808 -9.96732 -9.30283 -9.08335 -8.23962 -6.34311 -0.43317 0.40162 0.84695 1.36541 1.41573 1.42520 1.56505 1.65947 2.40242 2.84369 2.88728 3.09979 3.30606 3.59250 3.89228 3.93007 4.00293 4.04378 4.20253 4.25001 4.41479 4.44517 4.54781 4.70435 4.80125 4.85784 4.92559 5.05825 5.06550 5.12707 5.21729 5.27328 5.44612 5.48945 5.52332 5.59393 5.95360 5.96667 6.30800 6.49293 6.69182 6.82700 7.35904 8.87854 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032579 B = 0.003148 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.238960 B = 8892.983242 C = 8962.424116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.179 3.821 3 H 0.060 0.940 4 N -0.666 5.666 5 C 0.209 3.791 6 C -0.536 4.536 7 H 0.061 0.939 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.972 3.028 11 H -0.266 1.266 12 H -0.277 1.277 13 H -0.276 1.276 14 C 0.186 3.814 15 N -0.477 5.477 16 C -0.029 4.029 17 C -0.017 4.017 18 C -0.037 4.037 19 C -0.099 4.099 20 C -0.114 4.114 21 C -0.109 4.109 22 C -0.121 4.121 23 C -0.122 4.122 24 O -0.208 6.208 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.334 0.666 29 H -0.034 1.034 30 H 0.017 0.983 31 H 0.266 0.734 32 H 0.218 0.782 33 H 0.147 0.853 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 -4.317 -25.499 26.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.068 3.932 3 H 0.078 0.922 4 N -0.299 5.299 5 C 0.082 3.918 6 C -0.574 4.574 7 H 0.080 0.920 8 C -0.194 4.194 9 N -0.571 5.571 10 Si 0.797 3.203 11 H -0.190 1.190 12 H -0.203 1.203 13 H -0.202 1.202 14 C -0.019 4.019 15 N -0.205 5.205 16 C -0.169 4.169 17 C -0.070 4.070 18 C -0.038 4.038 19 C -0.117 4.117 20 C -0.132 4.132 21 C -0.126 4.126 22 C -0.139 4.139 23 C -0.140 4.140 24 O -0.095 6.095 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.152 0.848 29 H -0.016 1.016 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.234 0.766 33 H 0.165 0.835 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.165 0.835 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.434 -4.780 -24.761 25.335 hybrid contribution 1.184 1.060 0.511 1.669 sum 3.618 -3.720 -24.249 24.798 Atomic orbital electron populations 1.21707 0.90810 1.03110 1.02493 1.19969 0.97554 0.94095 0.81591 0.92187 1.60758 1.33288 1.33302 1.02508 1.19363 0.95093 0.89774 0.87597 1.21497 1.43871 0.97002 0.95045 0.92036 1.25889 0.95520 0.95782 1.02180 1.70073 1.49498 1.10510 1.26997 0.85289 0.77937 0.78772 0.78328 1.18964 1.20256 1.20159 1.26413 0.97938 0.87914 0.89666 1.70387 1.18751 1.13648 1.17741 1.23920 1.01914 1.00181 0.90885 1.21992 1.05376 0.86752 0.92881 1.17834 1.01782 0.95800 0.88334 1.21363 0.98233 0.97850 0.94291 1.21480 0.97770 0.98795 0.95158 1.21743 0.97991 0.92162 1.00753 1.21397 0.98357 1.00957 0.93195 1.21417 0.99194 0.95853 0.97546 1.84421 1.61099 1.38883 1.25083 0.91718 0.91486 0.90551 0.84818 1.01595 0.96480 0.92486 0.76590 0.83504 0.82147 0.82594 0.83521 0.86602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 9.40 71.98 0.68 -3.50 16 2 C 0.18 6.89 3.16 44.17 0.14 7.03 16 3 H 0.06 2.33 7.80 -2.39 -0.02 2.31 16 4 N -0.67 -30.44 6.28 -499.47 -3.13 -33.58 16 5 C 0.21 11.26 5.24 85.56 0.45 11.70 16 6 C -0.54 -31.05 9.32 25.60 0.24 -30.81 16 7 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 8 C 0.00 0.28 5.46 84.65 0.46 0.74 16 9 N -0.93 -55.99 13.29 21.44 0.28 -55.70 16 10 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 13 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 14 C 0.19 6.78 6.82 88.33 0.60 7.38 16 15 N -0.48 -17.07 11.25 -302.87 -3.41 -20.47 16 16 C -0.03 -0.82 11.29 83.77 0.95 0.12 16 17 C -0.02 -0.50 7.07 24.24 0.17 -0.33 16 18 C -0.04 -0.84 5.87 -20.09 -0.12 -0.96 16 19 C -0.10 -1.62 9.57 22.53 0.22 -1.40 16 20 C -0.11 -1.34 10.03 22.23 0.22 -1.12 16 21 C -0.11 -1.25 10.04 22.33 0.22 -1.03 16 22 C -0.12 -1.83 10.03 22.23 0.22 -1.61 16 23 C -0.12 -2.59 9.73 22.53 0.22 -2.38 16 24 O -0.21 -7.07 10.59 -7.73 -0.08 -7.15 16 25 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.07 2.37 7.45 -2.39 -0.02 2.36 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.33 15.38 8.34 -89.69 -0.75 14.64 16 29 H -0.03 -1.93 8.06 -2.39 -0.02 -1.95 16 30 H 0.02 0.97 7.44 -2.39 -0.02 0.96 16 31 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.22 4.25 7.30 -2.91 -0.02 4.23 16 33 H 0.15 1.76 7.04 -2.91 -0.02 1.74 16 34 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 35 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 36 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.12 2.62 7.95 -2.91 -0.02 2.60 16 Total: -1.00 -69.27 323.26 0.69 -68.58 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.33 Total: 17.65 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 4.67 Total: -16.14 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -6.26 Total: -109.76 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.08 Total: -7.15 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -69.27 0.69 -68.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299212933.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.136 kcal (2) G-P(sol) polarization free energy of solvation -69.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds