Wall clock time and date at job start Mon Mar 30 2020 01:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47160 * 2 1 4 4 N 1.46895 * 109.46900 * 239.99722 * 2 1 3 5 5 C 1.46900 * 111.00071 * 85.00468 * 4 2 1 6 6 C 1.50699 * 109.47441 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99867 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00385 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99754 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00392 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47009 * 59.99535 * 10 8 6 12 12 H 1.48502 * 109.47200 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46598 * 299.99837 * 10 8 6 14 14 C 1.50700 * 109.46672 * 120.00214 * 2 1 3 15 15 N 1.30353 * 125.48851 * 74.95879 * 14 2 1 16 16 C 1.34138 * 108.90721 * 179.76361 * 15 14 2 17 17 C 1.35775 * 107.51273 * 0.42972 * 16 15 14 18 18 C 1.47826 * 126.57975 * 179.84026 * 17 16 15 19 19 C 1.39572 * 120.14678 * 359.68834 * 18 17 16 20 20 C 1.37957 * 119.85344 * 179.97438 * 19 18 17 21 21 C 1.38361 * 120.14461 * 0.02562 * 20 19 18 22 22 C 1.38361 * 120.29055 * 0.27601 * 21 20 19 23 23 C 1.37960 * 120.14246 * 359.44538 * 22 21 20 24 24 O 1.33998 * 125.47752 * 254.99386 * 14 2 1 25 25 H 1.08999 * 109.47346 * 299.99818 * 1 2 3 26 26 H 1.09002 * 109.47175 * 60.00488 * 1 2 3 27 27 H 1.09002 * 109.47442 * 180.02562 * 1 2 3 28 28 H 1.00903 * 110.99928 * 208.95242 * 4 2 1 29 29 H 1.09003 * 109.46823 * 299.99698 * 5 4 2 30 30 H 1.08993 * 109.47268 * 59.99233 * 5 4 2 31 31 H 0.96989 * 119.99968 * 180.02562 * 9 8 6 32 32 H 1.08002 * 126.24004 * 180.29215 * 16 15 14 33 33 H 1.08007 * 120.07220 * 359.95680 * 19 18 17 34 34 H 1.08001 * 119.92694 * 180.02562 * 20 19 18 35 35 H 1.08002 * 119.85061 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.92338 * 179.71843 * 22 21 20 37 37 H 1.07999 * 120.06944 * 180.29873 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 6 2.5885 -0.5216 -3.5557 7 1 2.8388 -1.5694 -3.4791 8 6 2.7319 0.1352 -4.7595 9 7 2.4267 1.4111 -4.8529 10 14 3.3598 -0.7870 -6.2577 11 1 2.4396 -1.9101 -6.5692 12 1 3.4221 0.1377 -7.4180 13 1 4.7164 -1.3219 -5.9770 14 6 2.0322 -0.7105 1.2305 15 7 2.0247 -2.0008 1.4153 16 6 2.5516 -2.2705 2.6190 17 6 2.8853 -1.0865 3.1936 18 6 3.4957 -0.8950 4.5263 19 6 3.7796 -1.9985 5.3323 20 6 4.3497 -1.8128 6.5748 21 6 4.6396 -0.5361 7.0225 22 6 4.3550 0.5624 6.2309 23 6 3.7901 0.3902 4.9841 24 8 2.5578 -0.1173 2.3109 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 2.9173 -1.1205 -1.0287 29 1 1.0871 0.6162 -2.5525 30 1 2.7588 1.0461 -2.1182 31 1 2.5272 1.8730 -5.6997 32 1 2.6839 -3.2506 3.0530 33 1 3.5531 -2.9955 4.9843 34 1 4.5702 -2.6659 7.1994 35 1 5.0855 -0.3962 7.9962 36 1 4.5795 1.5565 6.5882 37 1 3.5729 1.2482 4.3652 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299212940.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:30 Heat of formation + Delta-G solvation = 45.379492 kcal Electronic energy + Delta-G solvation = -19430.782186 eV Core-core repulsion = 16367.473266 eV Total energy + Delta-G solvation = -3063.308920 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.19822 -39.26687 -36.39878 -34.58663 -33.04137 -32.37696 -31.26230 -30.13880 -28.04996 -26.22734 -24.05871 -23.63624 -22.39979 -21.77497 -21.03804 -20.05112 -17.95776 -16.88661 -16.54195 -16.16046 -15.89514 -15.22843 -14.85862 -14.63149 -14.18292 -13.83578 -13.55838 -13.32524 -13.19058 -13.02657 -12.40773 -11.99604 -11.74397 -11.61393 -11.59099 -11.37876 -11.18231 -10.95952 -10.73009 -10.58403 -10.30947 -10.04233 -9.90615 -9.29090 -9.24309 -8.50500 -8.09356 -7.45086 -6.05496 -4.07344 0.48355 1.07511 1.88332 2.56950 2.83168 3.34537 3.37859 3.41782 3.57058 4.10974 4.41698 4.45740 4.63076 4.63969 4.81121 4.96704 5.06902 5.09568 5.26618 5.30977 5.43083 5.53272 5.64449 5.68969 5.76103 5.84987 6.09690 6.12404 6.17755 6.27708 6.29912 6.36235 6.60044 6.64825 7.11846 7.31535 7.71618 7.89006 8.06726 8.26937 8.49759 9.00908 9.57442 11.05689 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032581 B = 0.003148 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.194809 B = 8892.171041 C = 8962.126221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.178 3.822 3 H 0.063 0.937 4 N -0.667 5.667 5 C 0.193 3.807 6 C -0.515 4.515 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.901 3.099 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.211 3.789 15 N -0.459 5.459 16 C -0.015 4.015 17 C -0.029 4.029 18 C -0.003 4.003 19 C -0.100 4.100 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.104 4.104 24 O -0.198 6.198 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.337 0.663 29 H 0.035 0.965 30 H -0.011 1.011 31 H 0.263 0.737 32 H 0.184 0.816 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 -2.954 23.342 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.067 3.933 3 H 0.081 0.919 4 N -0.300 5.300 5 C 0.067 3.933 6 C -0.553 4.553 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.729 3.271 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.202 1.202 14 C 0.005 3.995 15 N -0.187 5.187 16 C -0.155 4.155 17 C -0.082 4.082 18 C -0.003 4.003 19 C -0.118 4.118 20 C -0.133 4.133 21 C -0.136 4.136 22 C -0.134 4.134 23 C -0.122 4.122 24 O -0.085 6.085 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.155 0.845 29 H 0.053 0.947 30 H 0.007 0.993 31 H 0.072 0.928 32 H 0.201 0.799 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.443 -3.410 22.578 22.880 hybrid contribution 1.434 0.601 -0.096 1.558 sum 2.877 -2.809 22.482 22.839 Atomic orbital electron populations 1.21778 0.92240 1.03276 1.01691 1.20046 0.96531 0.94518 0.82183 0.91902 1.60887 1.33530 1.33827 1.01780 1.19711 0.96984 0.90106 0.86478 1.21101 1.43543 0.96884 0.93810 0.91798 1.24974 0.95571 0.94916 0.99008 1.69946 1.48681 1.09013 1.26105 0.86505 0.79390 0.79480 0.81718 1.20058 1.21336 1.20247 1.26914 0.95538 0.87796 0.89292 1.70450 1.18279 1.13680 1.16260 1.23422 1.01613 0.98656 0.91829 1.21335 1.07177 0.87170 0.92508 1.17645 0.99387 0.94394 0.88892 1.21060 0.98941 0.97835 0.94010 1.21051 0.99051 0.97517 0.95690 1.21286 0.99740 0.92652 0.99933 1.21112 0.98929 0.99255 0.94068 1.21326 0.98187 0.96363 0.96348 1.84449 1.61112 1.38074 1.24849 0.93209 0.90513 0.91155 0.84543 0.94730 0.99290 0.92783 0.79919 0.85245 0.85333 0.85747 0.85524 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.40 37.16 0.35 -1.83 16 2 C 0.18 3.31 3.16 -68.87 -0.22 3.09 16 3 H 0.06 1.15 7.80 -51.93 -0.40 0.75 16 4 N -0.67 -14.66 6.28 -109.23 -0.69 -15.34 16 5 C 0.19 4.99 5.24 -4.98 -0.03 4.97 16 6 C -0.51 -14.59 9.32 -34.44 -0.32 -14.91 16 7 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 10 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 C 0.21 3.73 6.82 -12.91 -0.09 3.64 16 15 N -0.46 -8.15 11.25 -10.82 -0.12 -8.27 16 16 C -0.01 -0.21 11.29 -17.43 -0.20 -0.41 16 17 C -0.03 -0.42 7.07 -36.54 -0.26 -0.67 16 18 C 0.00 -0.03 5.87 -104.98 -0.62 -0.65 16 19 C -0.10 -0.94 9.57 -39.19 -0.38 -1.32 16 20 C -0.12 -0.89 10.03 -39.64 -0.40 -1.29 16 21 C -0.12 -0.90 10.04 -39.49 -0.40 -1.30 16 22 C -0.12 -1.00 10.03 -39.64 -0.40 -1.40 16 23 C -0.10 -1.14 9.73 -39.19 -0.38 -1.52 16 24 O -0.20 -3.27 10.59 4.23 0.04 -3.22 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.31 7.45 -51.93 -0.39 0.92 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.34 7.44 8.34 -39.29 -0.33 7.11 16 29 H 0.03 0.94 7.44 -51.93 -0.39 0.55 16 30 H -0.01 -0.29 8.05 -51.93 -0.42 -0.71 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.18 1.97 7.30 -52.49 -0.38 1.59 16 33 H 0.13 0.97 7.04 -52.48 -0.37 0.60 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.13 1.39 7.95 -52.49 -0.42 0.97 16 LS Contribution 323.26 15.07 4.87 4.87 Total: -1.00 -31.48 323.26 -8.35 -39.83 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -4.75 Total: 3.32 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -3.42 Total: -12.07 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.07 Total: -49.47 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: 0.04 Total: -3.22 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.48 -8.35 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299212940.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.206 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds