Wall clock time and date at job start Mon Mar 30 2020 01:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37099 * 119.99742 * 2 1 4 4 H 1.08005 * 120.00058 * 204.38912 * 3 2 1 5 5 C 1.38956 * 120.00242 * 24.39379 * 3 2 1 6 6 N 1.31404 * 120.00053 * 12.63910 * 5 3 2 7 7 Si 1.86804 * 119.99854 * 192.64137 * 5 3 2 8 8 H 1.48499 * 109.47109 * 59.99840 * 7 5 3 9 9 H 1.48496 * 109.46824 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.46977 * 299.99952 * 7 5 3 11 11 C 1.34771 * 119.99853 * 179.97438 * 2 1 3 12 12 O 1.21301 * 119.99566 * 180.02562 * 11 2 1 13 13 C 1.50699 * 120.00183 * 0.02562 * 11 2 1 14 14 C 1.53001 * 109.46944 * 179.97438 * 13 11 2 15 15 C 1.50699 * 109.46944 * 180.02562 * 14 13 11 16 16 C 1.34242 * 126.50442 * 264.99895 * 15 14 13 17 17 N 1.36827 * 109.93399 * 179.97438 * 16 15 14 18 18 H 0.96993 * 125.06525 * 179.97438 * 17 16 15 19 19 C 1.37691 * 109.87240 * 0.02562 * 17 16 15 20 20 C 1.39123 * 133.50865 * 179.97438 * 19 17 16 21 21 C 1.37748 * 119.77814 * 180.02562 * 20 19 17 22 22 C 1.38826 * 120.66777 * 359.97438 * 21 20 19 23 23 C 1.36624 * 120.52986 * 0.02562 * 22 21 20 24 24 C 1.39634 * 119.76059 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47285 * 265.86709 * 1 2 3 26 26 H 1.09001 * 109.47091 * 25.86557 * 1 2 3 27 27 H 1.09001 * 109.47267 * 145.86291 * 1 2 3 28 28 H 0.96996 * 120.00526 * 180.02562 * 6 5 3 29 29 H 1.08995 * 109.47106 * 60.00047 * 13 11 2 30 30 H 1.09000 * 109.46940 * 299.99499 * 13 11 2 31 31 H 1.09008 * 109.47162 * 60.00438 * 14 13 11 32 32 H 1.08998 * 109.47519 * 300.00590 * 14 13 11 33 33 H 1.08001 * 125.03300 * 359.97438 * 16 15 14 34 34 H 1.07999 * 120.11201 * 0.31282 * 20 19 17 35 35 H 1.08002 * 119.66385 * 179.97438 * 21 20 19 36 36 H 1.08006 * 119.73897 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.12347 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1582 1.2291 -0.3862 5 6 1.5487 2.3370 0.4970 6 7 0.4345 2.2492 1.1881 7 14 2.3236 4.0074 0.1826 8 1 2.4040 4.2483 -1.2805 9 1 1.4932 5.0648 0.8130 10 1 3.6893 4.0369 0.7648 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3796 -3.6352 0.0005 15 6 1.6261 -4.9402 -0.0001 16 6 1.3080 -5.6792 1.0745 17 7 0.6224 -6.7975 0.6853 18 1 0.2876 -7.4827 1.2846 19 6 0.4796 -6.8060 -0.6842 20 6 -0.1191 -7.6868 -1.5794 21 6 -0.0956 -7.4118 -2.9289 22 6 0.5197 -6.2627 -3.4068 23 6 1.1137 -5.3841 -2.5455 24 6 1.1017 -5.6431 -1.1735 25 1 -0.3634 -0.0741 1.0250 26 1 -0.3633 0.9247 -0.4483 27 1 -0.3634 -0.8506 -0.5767 28 1 0.0142 3.0517 1.5347 29 1 0.7591 -2.5302 -0.8897 30 1 0.7584 -2.5298 0.8903 31 1 3.0063 -3.5774 0.8906 32 1 3.0064 -3.5774 -0.8894 33 1 1.5563 -5.4281 2.0951 34 1 -0.6047 -8.5808 -1.2170 35 1 -0.5606 -8.0970 -3.6222 36 1 0.5296 -6.0621 -4.4680 37 1 1.5908 -4.4924 -2.9245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299472134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:15 Heat of formation + Delta-G solvation = 21.316184 kcal Electronic energy + Delta-G solvation = -19913.439002 eV Core-core repulsion = 16849.086619 eV Total energy + Delta-G solvation = -3064.352383 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19161 -38.36537 -36.87512 -34.74148 -33.58306 -31.57593 -30.73243 -29.28125 -28.36632 -26.21805 -24.82715 -23.09291 -22.77091 -21.71299 -19.26531 -18.52959 -17.71555 -16.76646 -16.32009 -15.79284 -15.40868 -14.73302 -14.56037 -14.38359 -13.96656 -13.93844 -13.74115 -13.05025 -12.62062 -12.38955 -12.00885 -11.72209 -11.67501 -11.49512 -11.30149 -11.20984 -11.14057 -10.77510 -10.75014 -10.37217 -10.32368 -10.11650 -9.49226 -8.93152 -8.28626 -8.17576 -7.57398 -7.52801 -6.25026 -3.80974 1.17427 1.67010 2.77306 3.15814 3.23584 3.28249 3.32697 3.96459 4.02002 4.21313 4.76687 4.87930 4.96409 5.07797 5.18690 5.20680 5.38859 5.46506 5.61978 5.76659 5.83097 5.89857 5.94352 6.11264 6.15721 6.27061 6.45236 6.53218 6.63167 6.64567 6.73270 6.83387 6.91930 6.96030 7.22778 7.26838 7.56421 7.63178 8.23372 8.57830 9.27657 9.52464 10.09840 10.80082 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.003690 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.102124 B = 7586.631966 C = 7781.947127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.450 5.450 3 C -0.306 4.306 4 H 0.096 0.904 5 C 0.030 3.970 6 N -0.885 5.885 7 Si 0.925 3.075 8 H -0.274 1.274 9 H -0.285 1.285 10 H -0.273 1.273 11 C 0.447 3.553 12 O -0.592 6.592 13 C -0.121 4.121 14 C -0.027 4.027 15 C -0.153 4.153 16 C 0.043 3.957 17 N -0.599 5.599 18 H 0.413 0.587 19 C 0.094 3.906 20 C -0.136 4.136 21 C -0.102 4.102 22 C -0.153 4.153 23 C -0.064 4.064 24 C -0.102 4.102 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.026 0.974 28 H 0.267 0.733 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.170 0.830 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.683 -17.656 -3.209 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.169 5.169 3 C -0.434 4.434 4 H 0.114 0.886 5 C -0.173 4.173 6 N -0.524 5.524 7 Si 0.752 3.248 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.236 3.764 12 O -0.477 6.477 13 C -0.161 4.161 14 C -0.065 4.065 15 C -0.160 4.160 16 C -0.082 4.082 17 N -0.202 5.202 18 H 0.249 0.751 19 C -0.013 4.013 20 C -0.157 4.157 21 C -0.121 4.121 22 C -0.172 4.172 23 C -0.082 4.082 24 C -0.106 4.106 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.187 0.813 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.268 -17.551 -2.995 18.309 hybrid contribution -0.186 0.569 0.348 0.693 sum -4.455 -16.982 -2.647 17.755 Atomic orbital electron populations 1.21443 0.81373 0.99786 1.00444 1.43588 1.05398 1.04846 1.63081 1.19603 1.00536 0.84378 1.38889 0.88604 1.25326 0.96664 1.00042 0.95281 1.69984 1.19315 1.29564 1.33582 0.86022 0.79024 0.81118 0.78661 1.19972 1.21030 1.19831 1.20206 0.88082 0.85033 0.83128 1.90501 1.14104 1.87345 1.55799 1.21493 0.98673 0.93291 1.02653 1.19631 0.95762 0.87522 1.03580 1.20535 1.06019 0.98778 0.90683 1.21663 0.99223 0.87933 0.99403 1.41691 1.50912 1.22218 1.05335 0.75115 1.18273 1.01865 0.97623 0.83563 1.19959 1.03995 0.99358 0.92382 1.20755 0.99733 0.97476 0.94142 1.20609 1.01547 0.95567 0.99512 1.20384 0.97726 0.98993 0.91116 1.19175 1.02561 0.95383 0.93517 0.93194 0.90915 0.95570 0.92333 0.90736 0.90621 0.90769 0.90796 0.81299 0.86663 0.86114 0.86214 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.61 8.44 59.85 0.51 3.11 16 2 N -0.45 -11.86 3.01 -122.19 -0.37 -12.23 16 3 C -0.31 -8.75 9.24 -14.93 -0.14 -8.89 16 4 H 0.10 2.85 7.45 -52.48 -0.39 2.46 16 5 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 6 N -0.88 -24.12 10.83 55.50 0.60 -23.51 16 7 Si 0.92 21.14 29.57 -169.99 -5.03 16.11 16 8 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 C 0.45 11.11 7.63 -10.99 -0.08 11.03 16 12 O -0.59 -16.61 15.70 5.54 0.09 -16.52 16 13 C -0.12 -2.28 4.29 -27.88 -0.12 -2.40 16 14 C -0.03 -0.45 5.03 -27.88 -0.14 -0.59 16 15 C -0.15 -2.27 5.57 -102.71 -0.57 -2.84 16 16 C 0.04 0.52 11.73 -16.73 -0.20 0.32 16 17 N -0.60 -6.43 6.07 -10.65 -0.06 -6.49 16 18 H 0.41 2.98 8.96 -40.82 -0.37 2.61 16 19 C 0.09 1.20 7.28 -83.99 -0.61 0.59 16 20 C -0.14 -1.50 10.08 -39.43 -0.40 -1.89 16 21 C -0.10 -1.08 10.01 -39.54 -0.40 -1.48 16 22 C -0.15 -1.78 9.97 -39.95 -0.40 -2.18 16 23 C -0.06 -0.87 10.05 -39.64 -0.40 -1.27 16 24 C -0.10 -1.49 6.35 -105.14 -0.67 -2.16 16 25 H 0.05 1.17 7.83 -51.93 -0.41 0.76 16 26 H 0.07 1.76 6.80 -51.93 -0.35 1.41 16 27 H 0.03 0.50 6.61 -51.93 -0.34 0.16 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.07 1.33 7.41 -51.93 -0.38 0.95 16 30 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 31 H 0.07 1.29 8.10 -51.92 -0.42 0.87 16 32 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 33 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 37 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 315.19 15.07 4.75 4.75 Total: -1.00 -33.12 315.19 -8.48 -41.60 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.76 Total: 4.24 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -3.70 Total: -7.95 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.17 Total: -42.24 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.09 Total: -16.52 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.12 -8.48 -41.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299472134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.917 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds