Wall clock time and date at job start Mon Mar 30 2020 01:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37099 * 119.99742 * 2 1 4 4 H 1.08005 * 120.00058 * 204.38912 * 3 2 1 5 5 C 1.38956 * 120.00242 * 24.39379 * 3 2 1 6 6 N 1.31404 * 120.00053 * 12.63910 * 5 3 2 7 7 Si 1.86804 * 119.99854 * 192.64137 * 5 3 2 8 8 H 1.48499 * 109.47109 * 59.99840 * 7 5 3 9 9 H 1.48496 * 109.46824 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.46977 * 299.99952 * 7 5 3 11 11 C 1.34771 * 119.99853 * 179.97438 * 2 1 3 12 12 O 1.21301 * 119.99566 * 180.02562 * 11 2 1 13 13 C 1.50699 * 120.00183 * 0.02562 * 11 2 1 14 14 C 1.53001 * 109.46944 * 179.97438 * 13 11 2 15 15 C 1.50699 * 109.46944 * 180.02562 * 14 13 11 16 16 C 1.34242 * 126.50442 * 264.99895 * 15 14 13 17 17 N 1.36827 * 109.93399 * 179.97438 * 16 15 14 18 18 H 0.96993 * 125.06525 * 179.97438 * 17 16 15 19 19 C 1.37691 * 109.87240 * 0.02562 * 17 16 15 20 20 C 1.39123 * 133.50865 * 179.97438 * 19 17 16 21 21 C 1.37748 * 119.77814 * 180.02562 * 20 19 17 22 22 C 1.38826 * 120.66777 * 359.97438 * 21 20 19 23 23 C 1.36624 * 120.52986 * 0.02562 * 22 21 20 24 24 C 1.39634 * 119.76059 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47285 * 265.86709 * 1 2 3 26 26 H 1.09001 * 109.47091 * 25.86557 * 1 2 3 27 27 H 1.09001 * 109.47267 * 145.86291 * 1 2 3 28 28 H 0.96996 * 120.00526 * 180.02562 * 6 5 3 29 29 H 1.08995 * 109.47106 * 60.00047 * 13 11 2 30 30 H 1.09000 * 109.46940 * 299.99499 * 13 11 2 31 31 H 1.09008 * 109.47162 * 60.00438 * 14 13 11 32 32 H 1.08998 * 109.47519 * 300.00590 * 14 13 11 33 33 H 1.08001 * 125.03300 * 359.97438 * 16 15 14 34 34 H 1.07999 * 120.11201 * 0.31282 * 20 19 17 35 35 H 1.08002 * 119.66385 * 179.97438 * 21 20 19 36 36 H 1.08006 * 119.73897 * 179.97438 * 22 21 20 37 37 H 1.07997 * 120.12347 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1582 1.2291 -0.3862 5 6 1.5487 2.3370 0.4970 6 7 0.4345 2.2492 1.1881 7 14 2.3236 4.0074 0.1826 8 1 2.4040 4.2483 -1.2805 9 1 1.4932 5.0648 0.8130 10 1 3.6893 4.0369 0.7648 11 6 2.1388 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3853 -2.4723 0.0005 14 6 2.3796 -3.6352 0.0005 15 6 1.6261 -4.9402 -0.0001 16 6 1.3080 -5.6792 1.0745 17 7 0.6224 -6.7975 0.6853 18 1 0.2876 -7.4827 1.2846 19 6 0.4796 -6.8060 -0.6842 20 6 -0.1191 -7.6868 -1.5794 21 6 -0.0956 -7.4118 -2.9289 22 6 0.5197 -6.2627 -3.4068 23 6 1.1137 -5.3841 -2.5455 24 6 1.1017 -5.6431 -1.1735 25 1 -0.3634 -0.0741 1.0250 26 1 -0.3633 0.9247 -0.4483 27 1 -0.3634 -0.8506 -0.5767 28 1 0.0142 3.0517 1.5347 29 1 0.7591 -2.5302 -0.8897 30 1 0.7584 -2.5298 0.8903 31 1 3.0063 -3.5774 0.8906 32 1 3.0064 -3.5774 -0.8894 33 1 1.5563 -5.4281 2.0951 34 1 -0.6047 -8.5808 -1.2170 35 1 -0.5606 -8.0970 -3.6222 36 1 0.5296 -6.0621 -4.4680 37 1 1.5908 -4.4924 -2.9245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299472134.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:14 Heat of formation + Delta-G solvation = 1.701330 kcal Electronic energy + Delta-G solvation = -19914.289566 eV Core-core repulsion = 16849.086619 eV Total energy + Delta-G solvation = -3065.202947 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.12366 -40.31998 -37.76548 -36.72271 -34.95729 -33.60604 -31.86619 -30.20406 -29.54294 -28.12155 -26.62684 -24.71327 -23.68088 -22.60533 -20.65443 -20.08146 -18.87088 -18.66486 -17.66377 -17.25951 -16.59834 -16.32495 -16.19580 -15.92656 -15.33004 -15.02058 -14.71006 -14.45467 -14.35276 -13.62870 -13.49037 -13.26785 -13.16226 -13.01471 -12.86687 -12.62702 -12.52294 -12.48952 -12.28341 -12.12599 -11.85888 -11.53738 -10.98730 -10.52235 -10.25588 -9.64362 -9.08782 -8.50261 -8.32137 -5.97632 0.26530 0.75903 1.40067 1.41128 1.51990 1.77223 2.07170 2.29482 2.32738 3.02879 3.10488 3.17904 3.87401 3.93522 4.05130 4.24504 4.27097 4.37605 4.46578 4.53814 4.56379 4.64141 4.78138 4.87410 4.95560 5.02708 5.03644 5.14348 5.30169 5.35558 5.37081 5.45592 5.64176 5.76044 5.85446 5.90660 6.12966 6.30425 6.51406 6.80000 7.19160 7.50321 8.07619 8.70813 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.003690 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.102124 B = 7586.631966 C = 7781.947127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.467 5.467 3 C -0.348 4.348 4 H 0.070 0.930 5 C -0.002 4.002 6 N -0.898 5.898 7 Si 0.989 3.011 8 H -0.267 1.267 9 H -0.269 1.269 10 H -0.276 1.276 11 C 0.436 3.564 12 O -0.634 6.634 13 C -0.103 4.103 14 C -0.012 4.012 15 C -0.193 4.193 16 C 0.065 3.935 17 N -0.583 5.583 18 H 0.431 0.569 19 C 0.080 3.920 20 C -0.132 4.132 21 C -0.105 4.105 22 C -0.152 4.152 23 C -0.095 4.095 24 C -0.129 4.129 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.273 0.727 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.197 0.803 34 H 0.146 0.854 35 H 0.153 0.847 36 H 0.138 0.862 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.408 -19.266 -3.027 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.186 5.186 3 C -0.476 4.476 4 H 0.088 0.912 5 C -0.204 4.204 6 N -0.537 5.537 7 Si 0.812 3.188 8 H -0.192 1.192 9 H -0.193 1.193 10 H -0.202 1.202 11 C 0.226 3.774 12 O -0.522 6.522 13 C -0.143 4.143 14 C -0.051 4.051 15 C -0.200 4.200 16 C -0.062 4.062 17 N -0.188 5.188 18 H 0.271 0.729 19 C -0.028 4.028 20 C -0.153 4.153 21 C -0.124 4.124 22 C -0.171 4.171 23 C -0.114 4.114 24 C -0.134 4.134 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.214 0.786 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.155 0.845 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.042 -19.199 -2.807 20.322 hybrid contribution 0.330 0.996 0.288 1.088 sum -5.712 -18.202 -2.519 19.243 Atomic orbital electron populations 1.21389 0.79549 1.00537 1.00468 1.43882 1.06677 1.04805 1.63206 1.19599 1.00432 0.86386 1.41179 0.91239 1.26093 0.97053 1.02947 0.94310 1.70052 1.19748 1.30806 1.33050 0.85069 0.78024 0.76812 0.78864 1.19226 1.19337 1.20193 1.21240 0.88021 0.86537 0.81587 1.90459 1.16193 1.88204 1.57315 1.21408 0.98624 0.90456 1.03796 1.19354 0.95177 0.88504 1.02032 1.20294 1.08671 0.98790 0.92251 1.22003 0.97119 0.87265 0.99837 1.41666 1.49925 1.22102 1.05063 0.72875 1.18522 1.02261 0.97510 0.84489 1.20371 1.02911 0.99745 0.92262 1.21167 0.99074 0.97341 0.94785 1.20913 1.00509 0.95455 1.00222 1.20482 0.99573 0.99741 0.91620 1.19410 1.03566 0.96562 0.93827 0.93850 0.92523 0.91883 0.91708 0.89513 0.88994 0.91689 0.93044 0.78636 0.83611 0.82939 0.84456 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.69 8.44 127.77 1.08 6.77 16 2 N -0.47 -25.22 3.01 -658.88 -1.98 -27.20 16 3 C -0.35 -20.55 9.24 84.04 0.78 -19.77 16 4 H 0.07 4.36 7.45 -2.91 -0.02 4.34 16 5 C 0.00 -0.13 5.04 84.93 0.43 0.29 16 6 N -0.90 -48.83 10.83 21.66 0.23 -48.59 16 7 Si 0.99 43.48 29.57 68.60 2.03 45.51 16 8 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 C 0.44 22.35 7.63 87.66 0.67 23.02 16 12 O -0.63 -37.28 15.70 -3.10 -0.05 -37.33 16 13 C -0.10 -3.92 4.29 29.85 0.13 -3.79 16 14 C -0.01 -0.43 5.03 29.85 0.15 -0.27 16 15 C -0.19 -5.66 5.57 -18.63 -0.10 -5.76 16 16 C 0.06 1.44 11.73 83.00 0.97 2.41 16 17 N -0.58 -10.91 6.07 -187.61 -1.14 -12.05 16 18 H 0.43 4.71 8.96 -92.71 -0.83 3.88 16 19 C 0.08 1.87 7.28 39.03 0.28 2.15 16 20 C -0.13 -2.49 10.08 22.37 0.23 -2.26 16 21 C -0.10 -1.91 10.01 22.29 0.22 -1.69 16 22 C -0.15 -3.34 9.97 22.03 0.22 -3.12 16 23 C -0.10 -2.65 10.05 22.23 0.22 -2.43 16 24 C -0.13 -3.73 6.35 -20.20 -0.13 -3.86 16 25 H 0.04 2.02 7.83 -2.39 -0.02 2.00 16 26 H 0.06 2.75 6.80 -2.39 -0.02 2.74 16 27 H 0.06 2.38 6.61 -2.39 -0.02 2.36 16 28 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 29 H 0.09 3.09 7.41 -2.39 -0.02 3.08 16 30 H 0.09 3.21 8.11 -2.39 -0.02 3.19 16 31 H 0.06 2.34 8.10 -2.38 -0.02 2.32 16 32 H 0.05 1.99 8.10 -2.39 -0.02 1.97 16 33 H 0.20 3.17 8.06 -2.91 -0.02 3.14 16 34 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 36 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.11 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -73.89 315.19 4.49 -69.40 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.25 Total: 18.58 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 5.15 Total: -8.31 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -2.89 Total: -87.85 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.05 Total: -37.33 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -73.89 4.49 -69.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299472134.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.100 kcal (2) G-P(sol) polarization free energy of solvation -73.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds