Wall clock time and date at job start Mon Mar 30 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46492 * 109.47614 * 2 1 4 4 C 1.35491 * 124.78599 * 265.00729 * 3 2 1 5 5 C 1.36463 * 109.75078 * 179.97438 * 4 3 2 6 6 C 1.46827 * 126.77321 * 180.02562 * 5 4 3 7 7 O 1.21703 * 119.99970 * 127.55063 * 6 5 4 8 8 N 1.34777 * 119.99936 * 307.55246 * 6 5 4 9 9 C 1.46502 * 120.00079 * 4.13169 * 8 6 5 10 10 C 1.36960 * 120.00186 * 184.13254 * 8 6 5 11 11 H 1.08006 * 119.99787 * 351.96257 * 10 8 6 12 12 C 1.38967 * 120.00394 * 171.96447 * 10 8 6 13 13 N 1.31425 * 119.99575 * 5.52230 * 12 10 8 14 14 Si 1.86801 * 120.00265 * 185.52545 * 12 10 8 15 15 H 1.48497 * 109.46947 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47016 * 119.99599 * 14 12 10 17 17 H 1.48497 * 109.47212 * 239.99934 * 14 12 10 18 18 C 1.47457 * 106.45526 * 359.73860 * 5 4 3 19 19 C 1.39260 * 133.99577 * 179.50377 * 18 5 4 20 20 C 1.37768 * 119.67535 * 180.45831 * 19 18 5 21 21 C 1.38749 * 120.29461 * 0.25531 * 20 19 18 22 22 C 1.37774 * 120.63525 * 0.02562 * 21 20 19 23 23 C 1.37972 * 124.78341 * 85.00145 * 3 2 1 24 24 H 1.09002 * 109.46846 * 299.99996 * 1 2 3 25 25 H 1.09001 * 109.47299 * 59.99311 * 1 2 3 26 26 H 1.08996 * 109.47449 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46846 * 240.00004 * 2 1 3 28 28 H 1.09001 * 109.47299 * 120.00689 * 2 1 3 29 29 H 1.07997 * 125.12576 * 359.97438 * 4 3 2 30 30 H 1.08998 * 109.46954 * 2.85436 * 9 8 6 31 31 H 1.09003 * 109.47091 * 122.85843 * 9 8 6 32 32 H 1.09001 * 109.47351 * 242.85442 * 9 8 6 33 33 H 0.97004 * 119.99595 * 180.02562 * 13 12 10 34 34 H 1.08008 * 120.16644 * 0.72739 * 19 18 5 35 35 H 1.07991 * 119.85434 * 180.27224 * 20 19 18 36 36 H 1.07992 * 119.68282 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.03370 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3674 2.0776 -1.1085 5 6 2.7772 3.3305 -0.7559 6 6 3.2358 4.3924 -1.6604 7 8 2.7318 5.4987 -1.6049 8 7 4.2148 4.1418 -2.5521 9 6 4.7587 2.7877 -2.6816 10 6 4.7013 5.1532 -3.3372 11 1 4.2163 6.1182 -3.3366 12 6 5.8189 4.9377 -4.1345 13 7 6.3439 3.7358 -4.2190 14 14 6.5751 6.3562 -5.0861 15 1 5.8028 7.5968 -4.8219 16 1 7.9825 6.5483 -4.6531 17 1 6.5413 6.0514 -6.5390 18 6 2.6620 3.4100 0.7120 19 6 2.9314 4.4024 1.6511 20 6 2.7188 4.1513 2.9889 21 6 2.2437 2.9150 3.4021 22 6 1.9785 1.9223 2.4842 23 6 2.1877 2.1561 1.1289 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.3273 1.6983 -2.1189 30 1 4.2175 2.1138 -2.0176 31 1 4.6486 2.4489 -3.7118 32 1 5.8148 2.7930 -2.4119 33 1 7.1243 3.5855 -4.7752 34 1 3.3012 5.3658 1.3318 35 1 2.9226 4.9203 3.7192 36 1 2.0801 2.7290 4.4532 37 1 1.6093 0.9633 2.8167 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299550263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:09 Heat of formation + Delta-G solvation = 46.463634 kcal Electronic energy + Delta-G solvation = -20665.442107 eV Core-core repulsion = 17602.180199 eV Total energy + Delta-G solvation = -3063.261908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14369 -38.02208 -36.89036 -34.56767 -33.64981 -31.49392 -30.70926 -28.89364 -28.46074 -26.16725 -24.67897 -23.57998 -22.33843 -21.65574 -20.40047 -18.64716 -17.04518 -16.66427 -16.27246 -15.48569 -15.10741 -14.91412 -14.50831 -14.18289 -13.83066 -13.71621 -13.53926 -13.25051 -12.66696 -12.47930 -12.39549 -12.09422 -11.68042 -11.49946 -11.38679 -11.19654 -11.04787 -10.95023 -10.63257 -10.56651 -10.29032 -10.12437 -9.21457 -8.98064 -8.38664 -7.88831 -7.78832 -7.18706 -6.20293 -3.74169 1.41562 1.90274 2.79225 2.96567 3.20555 3.27564 3.35648 4.03315 4.16285 4.33742 4.61123 4.85011 4.92737 4.99074 5.11975 5.16069 5.27328 5.33366 5.35402 5.49293 5.52086 5.79931 5.83744 5.93334 5.97881 6.14490 6.24998 6.40307 6.51995 6.74261 6.91129 7.07647 7.11092 7.17227 7.47958 7.50176 7.55679 7.60793 8.16089 8.56713 9.25495 9.51898 10.09738 10.73806 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023594 B = 0.005359 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.479386 B = 5223.158855 C = 5949.907257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 N -0.478 5.478 4 C 0.070 3.930 5 C -0.171 4.171 6 C 0.505 3.495 7 O -0.594 6.594 8 N -0.441 5.441 9 C 0.109 3.891 10 C -0.294 4.294 11 H 0.105 0.895 12 C 0.024 3.976 13 N -0.888 5.888 14 Si 0.930 3.070 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 C -0.071 4.071 19 C -0.057 4.057 20 C -0.154 4.154 21 C -0.106 4.106 22 C -0.134 4.134 23 C 0.093 3.907 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.172 0.828 30 H 0.030 0.970 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.264 0.736 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.865 -10.321 9.797 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.015 4.015 3 N -0.162 5.162 4 C -0.057 4.057 5 C -0.181 4.181 6 C 0.293 3.707 7 O -0.480 6.480 8 N -0.158 5.158 9 C -0.035 4.035 10 C -0.422 4.422 11 H 0.123 0.877 12 C -0.177 4.177 13 N -0.529 5.529 14 Si 0.757 3.243 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 C -0.076 4.076 19 C -0.075 4.075 20 C -0.174 4.174 21 C -0.125 4.125 22 C -0.155 4.155 23 C -0.012 4.012 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.189 0.811 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.022 -10.191 9.638 15.686 hybrid contribution 0.538 0.329 -0.646 0.903 sum -6.485 -9.862 8.992 14.838 Atomic orbital electron populations 1.22199 0.94901 1.02527 1.03328 1.21718 0.95144 0.80655 1.04032 1.43649 1.56070 1.11835 1.04644 1.21990 1.01016 0.91565 0.91121 1.20402 1.10397 0.94791 0.92500 1.16911 0.83860 0.87047 0.82863 1.90614 1.59738 1.24553 1.73077 1.43621 1.31247 1.09218 1.31703 1.21942 0.99028 0.82225 1.00269 1.19869 1.09563 0.93794 1.18962 0.87678 1.25342 0.96637 0.97710 0.97999 1.70201 1.23192 1.19795 1.39715 0.85781 0.78869 0.80974 0.78647 1.19174 1.20670 1.20784 1.18888 1.03160 0.93370 0.92189 1.20628 0.96918 0.98289 0.91705 1.20831 1.03867 0.97379 0.95302 1.20681 1.00222 0.93245 0.98362 1.19868 1.06457 0.99914 0.89233 1.18195 1.03603 0.91175 0.88252 0.91943 0.91771 0.91053 0.89138 0.89788 0.81063 0.95139 0.91748 0.91249 0.92523 0.85670 0.86278 0.86263 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.24 37.16 0.38 -1.14 16 2 C 0.11 1.06 6.67 -4.05 -0.03 1.03 16 3 N -0.48 -7.14 2.74 -114.19 -0.31 -7.45 16 4 C 0.07 1.23 8.89 -16.58 -0.15 1.09 16 5 C -0.17 -3.72 5.30 -103.31 -0.55 -4.27 16 6 C 0.50 13.34 7.51 -12.79 -0.10 13.24 16 7 O -0.59 -17.70 16.70 5.19 0.09 -17.61 16 8 N -0.44 -11.84 3.02 -123.63 -0.37 -12.21 16 9 C 0.11 2.56 8.57 59.85 0.51 3.07 16 10 C -0.29 -8.41 9.55 -14.99 -0.14 -8.55 16 11 H 0.11 3.15 7.18 -52.48 -0.38 2.77 16 12 C 0.02 0.66 5.46 -17.46 -0.10 0.56 16 13 N -0.89 -23.64 9.47 55.50 0.53 -23.11 16 14 Si 0.93 21.11 29.56 -169.99 -5.02 16.09 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 C -0.07 -1.42 6.36 -104.95 -0.67 -2.09 16 19 C -0.06 -1.06 10.09 -39.37 -0.40 -1.46 16 20 C -0.15 -2.31 10.03 -39.56 -0.40 -2.71 16 21 C -0.11 -1.41 10.01 -39.56 -0.40 -1.80 16 22 C -0.13 -1.85 9.97 -39.42 -0.39 -2.25 16 23 C 0.09 1.54 6.79 -83.96 -0.57 0.97 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.17 2.64 7.58 -52.49 -0.40 2.25 16 30 H 0.03 0.62 4.17 -51.93 -0.22 0.40 16 31 H 0.06 1.55 7.21 -51.93 -0.37 1.18 16 32 H 0.07 1.75 6.89 -51.93 -0.36 1.39 16 33 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 34 H 0.13 2.45 8.06 -52.48 -0.42 2.03 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 312.49 15.07 4.71 4.71 Total: -1.00 -33.28 312.49 -8.04 -41.32 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.66 Total: 2.57 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -2.98 Total: -4.30 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -0.16 Total: -42.78 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.09 Total: -17.61 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.28 -8.04 -41.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299550263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.779 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds