Wall clock time and date at job start Mon Mar 30 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46492 * 109.47614 * 2 1 4 4 C 1.35491 * 124.78599 * 265.00729 * 3 2 1 5 5 C 1.36463 * 109.75078 * 179.97438 * 4 3 2 6 6 C 1.46827 * 126.77321 * 180.02562 * 5 4 3 7 7 O 1.21703 * 119.99970 * 127.55063 * 6 5 4 8 8 N 1.34777 * 119.99936 * 307.55246 * 6 5 4 9 9 C 1.46502 * 120.00079 * 4.13169 * 8 6 5 10 10 C 1.36960 * 120.00186 * 184.13254 * 8 6 5 11 11 H 1.08006 * 119.99787 * 351.96257 * 10 8 6 12 12 C 1.38967 * 120.00394 * 171.96447 * 10 8 6 13 13 N 1.31425 * 119.99575 * 5.52230 * 12 10 8 14 14 Si 1.86801 * 120.00265 * 185.52545 * 12 10 8 15 15 H 1.48497 * 109.46947 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47016 * 119.99599 * 14 12 10 17 17 H 1.48497 * 109.47212 * 239.99934 * 14 12 10 18 18 C 1.47457 * 106.45526 * 359.73860 * 5 4 3 19 19 C 1.39260 * 133.99577 * 179.50377 * 18 5 4 20 20 C 1.37768 * 119.67535 * 180.45831 * 19 18 5 21 21 C 1.38749 * 120.29461 * 0.25531 * 20 19 18 22 22 C 1.37774 * 120.63525 * 0.02562 * 21 20 19 23 23 C 1.37972 * 124.78341 * 85.00145 * 3 2 1 24 24 H 1.09002 * 109.46846 * 299.99996 * 1 2 3 25 25 H 1.09001 * 109.47299 * 59.99311 * 1 2 3 26 26 H 1.08996 * 109.47449 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46846 * 240.00004 * 2 1 3 28 28 H 1.09001 * 109.47299 * 120.00689 * 2 1 3 29 29 H 1.07997 * 125.12576 * 359.97438 * 4 3 2 30 30 H 1.08998 * 109.46954 * 2.85436 * 9 8 6 31 31 H 1.09003 * 109.47091 * 122.85843 * 9 8 6 32 32 H 1.09001 * 109.47351 * 242.85442 * 9 8 6 33 33 H 0.97004 * 119.99595 * 180.02562 * 13 12 10 34 34 H 1.08008 * 120.16644 * 0.72739 * 19 18 5 35 35 H 1.07991 * 119.85434 * 180.27224 * 20 19 18 36 36 H 1.07992 * 119.68282 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.03370 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3674 2.0776 -1.1085 5 6 2.7772 3.3305 -0.7559 6 6 3.2358 4.3924 -1.6604 7 8 2.7318 5.4987 -1.6049 8 7 4.2148 4.1418 -2.5521 9 6 4.7587 2.7877 -2.6816 10 6 4.7013 5.1532 -3.3372 11 1 4.2163 6.1182 -3.3366 12 6 5.8189 4.9377 -4.1345 13 7 6.3439 3.7358 -4.2190 14 14 6.5751 6.3562 -5.0861 15 1 5.8028 7.5968 -4.8219 16 1 7.9825 6.5483 -4.6531 17 1 6.5413 6.0514 -6.5390 18 6 2.6620 3.4100 0.7120 19 6 2.9314 4.4024 1.6511 20 6 2.7188 4.1513 2.9889 21 6 2.2437 2.9150 3.4021 22 6 1.9785 1.9223 2.4842 23 6 2.1877 2.1561 1.1289 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.3273 1.6983 -2.1189 30 1 4.2175 2.1138 -2.0176 31 1 4.6486 2.4489 -3.7118 32 1 5.8148 2.7930 -2.4119 33 1 7.1243 3.5855 -4.7752 34 1 3.3012 5.3658 1.3318 35 1 2.9226 4.9203 3.7192 36 1 2.0801 2.7290 4.4532 37 1 1.6093 0.9633 2.8167 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299550263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:09 Heat of formation + Delta-G solvation = 26.402176 kcal Electronic energy + Delta-G solvation = -20666.312037 eV Core-core repulsion = 17602.180199 eV Total energy + Delta-G solvation = -3064.131838 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.44074 -39.99296 -38.06739 -36.66367 -34.78821 -33.51004 -31.86562 -30.14380 -29.80044 -28.09381 -26.54668 -24.68849 -23.69622 -23.06783 -21.59691 -20.29412 -19.00999 -18.26317 -17.56839 -17.09666 -16.46863 -16.20953 -16.09164 -15.70719 -15.55258 -15.17430 -14.84036 -14.42286 -14.21525 -13.96129 -13.62830 -13.47922 -13.24872 -12.93385 -12.79681 -12.72051 -12.53351 -12.36908 -12.13585 -12.06801 -11.96135 -11.79269 -11.04546 -10.62319 -10.38667 -9.89703 -9.13902 -8.53416 -8.26504 -5.91426 0.13182 0.68226 1.24265 1.38822 1.45349 1.53880 1.82760 2.18071 2.31193 2.97933 3.06335 3.25335 3.73742 3.79537 3.88993 4.12751 4.19213 4.27180 4.36451 4.45083 4.56079 4.61945 4.67896 4.79234 4.87540 4.91623 4.93355 5.14560 5.20720 5.26979 5.42002 5.48191 5.54538 5.64874 5.77102 5.82011 6.05846 6.22918 6.40130 6.49711 7.15082 7.46995 8.04752 8.65206 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023594 B = 0.005359 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.479386 B = 5223.158855 C = 5949.907257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 N -0.465 5.465 4 C 0.101 3.899 5 C -0.235 4.235 6 C 0.500 3.500 7 O -0.647 6.647 8 N -0.455 5.455 9 C 0.126 3.874 10 C -0.341 4.341 11 H 0.074 0.926 12 C -0.005 4.005 13 N -0.895 5.895 14 Si 0.996 3.004 15 H -0.277 1.277 16 H -0.269 1.269 17 H -0.264 1.264 18 C -0.107 4.107 19 C -0.104 4.104 20 C -0.140 4.140 21 C -0.100 4.100 22 C -0.119 4.119 23 C 0.085 3.915 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.192 0.808 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.273 0.727 34 H 0.089 0.911 35 H 0.143 0.857 36 H 0.166 0.834 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.330 -13.681 11.527 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.023 4.023 3 N -0.147 5.147 4 C -0.030 4.030 5 C -0.245 4.245 6 C 0.290 3.710 7 O -0.537 6.537 8 N -0.172 5.172 9 C -0.017 4.017 10 C -0.469 4.469 11 H 0.092 0.908 12 C -0.205 4.205 13 N -0.535 5.535 14 Si 0.819 3.181 15 H -0.202 1.202 16 H -0.194 1.194 17 H -0.189 1.189 18 C -0.112 4.112 19 C -0.123 4.123 20 C -0.159 4.159 21 C -0.119 4.119 22 C -0.139 4.139 23 C -0.020 4.020 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.121 0.879 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.209 0.791 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.161 0.839 36 H 0.183 0.817 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.486 -13.629 11.389 19.275 hybrid contribution 0.622 1.281 -1.071 1.782 sum -6.864 -12.349 10.318 17.495 Atomic orbital electron populations 1.22176 0.93871 1.04204 1.02215 1.22220 0.95911 0.77725 1.06470 1.43964 1.54283 1.13252 1.03206 1.22105 0.98124 0.90124 0.92665 1.20080 1.15565 0.95715 0.93162 1.17677 0.82947 0.87636 0.82711 1.90534 1.61398 1.27274 1.74477 1.43843 1.31463 1.09973 1.31895 1.21782 0.98058 0.81402 1.00415 1.19786 1.11559 0.93751 1.21806 0.90783 1.26115 0.95987 1.00433 0.97987 1.70282 1.23110 1.20756 1.39384 0.84845 0.77972 0.77361 0.77943 1.20214 1.19376 1.18921 1.19147 1.04889 0.95661 0.91513 1.20616 1.00450 0.97406 0.93836 1.21172 1.01873 0.99098 0.93785 1.21214 0.98277 0.91786 1.00622 1.20404 1.04188 1.01699 0.87589 1.18457 1.03710 0.90002 0.89831 0.92653 0.93341 0.87933 0.87064 0.87122 0.79099 0.91817 0.92544 0.93268 0.91702 0.89227 0.83879 0.81658 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 71.98 0.74 -1.56 16 2 C 0.10 1.48 6.67 86.38 0.58 2.06 16 3 N -0.47 -12.73 2.74 -515.20 -1.41 -14.14 16 4 C 0.10 3.48 8.89 83.71 0.74 4.22 16 5 C -0.23 -10.74 5.30 -19.02 -0.10 -10.84 16 6 C 0.50 28.52 7.51 86.49 0.65 29.16 16 7 O -0.65 -42.32 16.70 -4.36 -0.07 -42.39 16 8 N -0.45 -26.02 3.02 -663.25 -2.00 -28.02 16 9 C 0.13 6.12 8.57 127.77 1.09 7.22 16 10 C -0.34 -20.81 9.55 84.07 0.80 -20.01 16 11 H 0.07 4.85 7.18 -2.91 -0.02 4.83 16 12 C 0.00 -0.25 5.46 84.93 0.46 0.21 16 13 N -0.90 -48.27 9.47 21.67 0.21 -48.07 16 14 Si 1.00 44.23 29.56 68.60 2.03 46.26 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 16 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 18 C -0.11 -4.45 6.36 -20.08 -0.13 -4.58 16 19 C -0.10 -4.13 10.09 22.40 0.23 -3.91 16 20 C -0.14 -4.04 10.03 22.28 0.22 -3.81 16 21 C -0.10 -2.24 10.01 22.28 0.22 -2.02 16 22 C -0.12 -2.76 9.97 22.37 0.22 -2.54 16 23 C 0.09 2.66 6.79 38.91 0.26 2.93 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.11 1.33 8.11 -2.39 -0.02 1.31 16 28 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.19 5.67 7.58 -2.91 -0.02 5.64 16 30 H 0.06 2.61 4.17 -2.39 -0.01 2.60 16 31 H 0.06 2.78 7.21 -2.39 -0.02 2.76 16 32 H 0.05 2.56 6.89 -2.39 -0.02 2.54 16 33 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 34 H 0.09 4.01 8.06 -2.91 -0.02 3.98 16 35 H 0.14 3.28 8.06 -2.92 -0.02 3.26 16 36 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -80.63 312.49 5.81 -74.82 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 1.07 Total: 14.99 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 6.00 Total: -3.44 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -3.21 Total: -90.23 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.07 Total: -42.39 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -80.63 5.81 -74.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299550263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.222 kcal (2) G-P(sol) polarization free energy of solvation -80.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds