Wall clock time and date at job start Mon Mar 30 2020 01:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47005 * 2 1 4 4 C 1.36834 * 125.05933 * 265.02487 * 3 2 1 5 5 C 1.34238 * 109.92430 * 179.97438 * 4 3 2 6 6 C 1.50697 * 126.49582 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47266 * 265.02435 * 6 5 4 8 8 O 1.21292 * 119.99931 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 5 10 10 C 1.37090 * 119.99722 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00228 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99996 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99860 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00198 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47163 * 60.00180 * 14 12 10 16 16 H 1.48505 * 109.47234 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47290 * 300.00176 * 14 12 10 18 18 C 1.46482 * 107.00139 * 0.22624 * 5 4 3 19 19 C 1.39628 * 134.03430 * 179.73300 * 18 5 4 20 20 C 1.36632 * 119.76617 * 180.02562 * 19 18 5 21 21 C 1.38831 * 120.52785 * 359.97438 * 20 19 18 22 22 C 1.37751 * 120.66454 * 359.66539 * 21 20 19 23 23 C 1.37686 * 125.06200 * 85.00157 * 3 2 1 24 24 H 1.08995 * 109.47459 * 60.00116 * 1 2 3 25 25 H 1.09001 * 109.47238 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47145 * 299.99984 * 1 2 3 27 27 H 1.08998 * 109.47145 * 240.00016 * 2 1 3 28 28 H 1.09004 * 109.47038 * 119.99513 * 2 1 3 29 29 H 1.07998 * 125.03463 * 359.94225 * 4 3 2 30 30 H 1.09004 * 109.47205 * 145.02529 * 6 5 4 31 31 H 1.08997 * 109.47395 * 25.03021 * 6 5 4 32 32 H 0.96995 * 120.00015 * 359.72695 * 9 7 6 33 33 H 0.97000 * 120.00310 * 180.02562 * 13 12 10 34 34 H 1.07998 * 120.11895 * 0.06337 * 19 18 5 35 35 H 1.07995 * 119.73413 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.66483 * 180.02562 * 21 20 19 37 37 H 1.08004 * 120.11030 * 179.87439 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3719 2.0900 -1.1158 5 6 2.7746 3.3220 -0.7667 6 6 3.2452 4.4088 -1.6986 7 6 4.7491 4.3764 -1.7893 8 8 5.3770 3.5515 -1.1595 9 7 5.3965 5.2640 -2.5702 10 6 6.7646 5.2348 -2.6522 11 1 7.3237 4.5003 -2.0915 12 6 7.4320 6.1495 -3.4577 13 7 6.7517 7.0428 -4.1404 14 14 9.2961 6.1093 -3.5701 15 1 9.7323 4.7883 -4.0899 16 1 9.7600 7.1806 -4.4879 17 1 9.8782 6.3272 -2.2214 18 6 2.6756 3.4076 0.6922 19 6 2.9501 4.4082 1.6266 20 6 2.7470 4.1688 2.9563 21 6 2.2693 2.9382 3.3864 22 6 1.9850 1.9396 2.4812 23 6 2.1893 2.1597 1.1227 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 2.3332 1.7136 -2.1274 30 1 2.9251 5.3784 -1.3171 31 1 2.8180 4.2489 -2.6885 32 1 4.8941 5.9210 -3.0769 33 1 7.2175 7.6811 -4.7030 34 1 3.3210 5.3683 1.2993 35 1 2.9599 4.9429 3.6786 36 1 2.1135 2.7642 4.4408 37 1 1.6156 0.9850 2.8258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299653935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:54 Heat of formation + Delta-G solvation = 16.374562 kcal Electronic energy + Delta-G solvation = -20076.618891 eV Core-core repulsion = 17012.052222 eV Total energy + Delta-G solvation = -3064.566668 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.09188 -37.96772 -36.88595 -34.28320 -33.65081 -31.37313 -31.00515 -29.76842 -28.80090 -26.82677 -24.53339 -23.31468 -22.21365 -20.98828 -19.81217 -18.69958 -17.75003 -16.57567 -16.30665 -15.75603 -15.18572 -14.76762 -14.43860 -14.37982 -14.07210 -13.82037 -13.61092 -13.29953 -12.80193 -12.46829 -12.32041 -12.23527 -12.00997 -11.59213 -11.43632 -11.37295 -11.06793 -11.01485 -10.84069 -10.44662 -10.38375 -10.13356 -9.41569 -9.22893 -8.27140 -7.87645 -7.83966 -7.19915 -6.33637 -3.74024 1.44722 1.93530 2.97650 3.04433 3.25015 3.29795 3.35040 4.03936 4.20291 4.28030 4.59291 4.85454 4.91406 5.08420 5.13360 5.17846 5.29548 5.32516 5.34536 5.42683 5.49887 5.65265 5.74304 5.86207 5.88831 6.03435 6.09836 6.18818 6.20522 6.49762 6.56015 6.77581 6.93404 7.08263 7.17359 7.53521 7.61505 7.62489 8.15093 8.71596 9.26912 9.65090 10.18119 10.84190 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025125 B = 0.004291 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.162189 B = 6524.474755 C = 7076.080963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.109 3.891 3 N -0.486 5.486 4 C 0.049 3.951 5 C -0.124 4.124 6 C -0.062 4.062 7 C 0.445 3.555 8 O -0.585 6.585 9 N -0.568 5.568 10 C -0.297 4.297 11 H 0.101 0.899 12 C 0.022 3.978 13 N -0.904 5.904 14 Si 0.928 3.072 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.274 1.274 18 C -0.087 4.087 19 C -0.059 4.059 20 C -0.156 4.156 21 C -0.105 4.105 22 C -0.136 4.136 23 C 0.099 3.901 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.163 0.837 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.392 0.608 33 H 0.271 0.729 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.797 -9.210 8.107 18.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 N -0.171 5.171 4 C -0.074 4.074 5 C -0.131 4.131 6 C -0.103 4.103 7 C 0.231 3.769 8 O -0.469 6.469 9 N -0.205 5.205 10 C -0.427 4.427 11 H 0.118 0.882 12 C -0.180 4.180 13 N -0.546 5.546 14 Si 0.756 3.244 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.200 1.200 18 C -0.092 4.092 19 C -0.077 4.077 20 C -0.176 4.176 21 C -0.124 4.124 22 C -0.157 4.157 23 C -0.007 4.007 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.180 0.820 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.225 0.775 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.407 -9.953 8.350 18.669 hybrid contribution 0.739 0.356 -0.497 0.959 sum -12.668 -9.597 7.854 17.727 Atomic orbital electron populations 1.22193 0.95074 1.02427 1.03096 1.21638 0.94857 0.80913 1.03842 1.43795 1.57033 1.11583 1.04655 1.21432 1.03416 0.91696 0.90904 1.19708 1.06361 0.95382 0.91613 1.19889 0.94980 0.97245 0.98168 1.19940 0.88520 0.84484 0.83967 1.90531 1.68413 1.39965 1.47965 1.41894 1.07350 1.30295 1.40936 1.19647 0.81798 1.15729 1.25541 0.88164 1.25222 1.00408 0.95840 0.96489 1.69604 1.36441 1.19014 1.29519 0.85958 0.82526 0.77778 0.78178 1.20017 1.21016 1.19969 1.19037 1.03451 0.93631 0.93083 1.20313 0.97111 0.98191 0.92128 1.20536 1.04038 0.97540 0.95442 1.20684 1.00099 0.93293 0.98366 1.19878 1.06573 0.99813 0.89408 1.18195 1.02792 0.91334 0.88336 0.91909 0.91183 0.92033 0.89419 0.90046 0.81985 0.89757 0.89817 0.77464 0.91944 0.86254 0.86477 0.86383 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.11 1.10 6.72 -4.04 -0.03 1.07 16 3 N -0.49 -7.09 2.78 -114.42 -0.32 -7.41 16 4 C 0.05 0.78 11.19 -16.73 -0.19 0.59 16 5 C -0.12 -2.27 4.81 -102.71 -0.49 -2.77 16 6 C -0.06 -1.15 6.23 -29.04 -0.18 -1.33 16 7 C 0.45 10.87 7.78 -10.98 -0.09 10.79 16 8 O -0.58 -16.59 15.61 5.55 0.09 -16.50 16 9 N -0.57 -14.75 5.29 -10.96 -0.06 -14.81 16 10 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 11 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 14 Si 0.93 21.50 29.55 -169.99 -5.02 16.48 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 C -0.09 -1.60 6.35 -105.14 -0.67 -2.27 16 19 C -0.06 -1.01 10.05 -39.64 -0.40 -1.41 16 20 C -0.16 -2.28 9.97 -39.94 -0.40 -2.68 16 21 C -0.11 -1.41 10.01 -39.54 -0.40 -1.80 16 22 C -0.14 -1.90 10.00 -39.43 -0.39 -2.30 16 23 C 0.10 1.62 6.81 -83.99 -0.57 1.05 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.76 8.12 -51.93 -0.42 0.34 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 33 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 35 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 37 H 0.11 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 323.56 15.07 4.88 4.88 Total: -1.00 -33.92 323.56 -8.28 -42.20 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -4.91 Total: 9.67 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -3.66 Total: -10.22 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.35 Total: -46.50 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.09 Total: -16.50 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.92 -8.28 -42.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299653935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.574 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds