Wall clock time and date at job start Mon Mar 30 2020 01:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47005 * 2 1 4 4 C 1.36834 * 125.05933 * 265.02487 * 3 2 1 5 5 C 1.34238 * 109.92430 * 179.97438 * 4 3 2 6 6 C 1.50697 * 126.49582 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47266 * 265.02435 * 6 5 4 8 8 O 1.21292 * 119.99931 * 0.02562 * 7 6 5 9 9 N 1.34784 * 119.99961 * 180.02562 * 7 6 5 10 10 C 1.37090 * 119.99722 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00228 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99996 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99860 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00198 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47163 * 60.00180 * 14 12 10 16 16 H 1.48505 * 109.47234 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47290 * 300.00176 * 14 12 10 18 18 C 1.46482 * 107.00139 * 0.22624 * 5 4 3 19 19 C 1.39628 * 134.03430 * 179.73300 * 18 5 4 20 20 C 1.36632 * 119.76617 * 180.02562 * 19 18 5 21 21 C 1.38831 * 120.52785 * 359.97438 * 20 19 18 22 22 C 1.37751 * 120.66454 * 359.66539 * 21 20 19 23 23 C 1.37686 * 125.06200 * 85.00157 * 3 2 1 24 24 H 1.08995 * 109.47459 * 60.00116 * 1 2 3 25 25 H 1.09001 * 109.47238 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47145 * 299.99984 * 1 2 3 27 27 H 1.08998 * 109.47145 * 240.00016 * 2 1 3 28 28 H 1.09004 * 109.47038 * 119.99513 * 2 1 3 29 29 H 1.07998 * 125.03463 * 359.94225 * 4 3 2 30 30 H 1.09004 * 109.47205 * 145.02529 * 6 5 4 31 31 H 1.08997 * 109.47395 * 25.03021 * 6 5 4 32 32 H 0.96995 * 120.00015 * 359.72695 * 9 7 6 33 33 H 0.97000 * 120.00310 * 180.02562 * 13 12 10 34 34 H 1.07998 * 120.11895 * 0.06337 * 19 18 5 35 35 H 1.07995 * 119.73413 * 179.97438 * 20 19 18 36 36 H 1.07997 * 119.66483 * 180.02562 * 21 20 19 37 37 H 1.08004 * 120.11030 * 179.87439 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3719 2.0900 -1.1158 5 6 2.7746 3.3220 -0.7667 6 6 3.2452 4.4088 -1.6986 7 6 4.7491 4.3764 -1.7893 8 8 5.3770 3.5515 -1.1595 9 7 5.3965 5.2640 -2.5702 10 6 6.7646 5.2348 -2.6522 11 1 7.3237 4.5003 -2.0915 12 6 7.4320 6.1495 -3.4577 13 7 6.7517 7.0428 -4.1404 14 14 9.2961 6.1093 -3.5701 15 1 9.7323 4.7883 -4.0899 16 1 9.7600 7.1806 -4.4879 17 1 9.8782 6.3272 -2.2214 18 6 2.6756 3.4076 0.6922 19 6 2.9501 4.4082 1.6266 20 6 2.7470 4.1688 2.9563 21 6 2.2693 2.9382 3.3864 22 6 1.9850 1.9396 2.4812 23 6 2.1893 2.1597 1.1227 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 2.3332 1.7136 -2.1274 30 1 2.9251 5.3784 -1.3171 31 1 2.8180 4.2489 -2.6885 32 1 4.8941 5.9210 -3.0769 33 1 7.2175 7.6811 -4.7030 34 1 3.3210 5.3683 1.2993 35 1 2.9599 4.9429 3.6786 36 1 2.1135 2.7642 4.4408 37 1 1.6156 0.9850 2.8258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299653935.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:54 Heat of formation + Delta-G solvation = -3.874550 kcal Electronic energy + Delta-G solvation = -20077.496958 eV Core-core repulsion = 17012.052222 eV Total energy + Delta-G solvation = -3065.444736 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.24408 -39.92746 -37.97699 -36.02009 -35.08588 -33.26949 -32.28427 -31.07744 -29.90237 -28.19938 -26.40895 -24.32047 -23.32415 -22.19356 -21.33735 -20.31372 -19.70521 -17.70814 -17.64465 -17.40662 -16.47477 -16.30495 -15.85438 -15.74074 -15.63201 -15.23641 -14.82713 -14.40645 -14.30026 -13.78535 -13.61764 -13.50645 -13.28900 -13.06999 -12.89908 -12.68762 -12.41358 -12.27657 -12.11806 -12.07138 -12.02845 -11.61254 -11.47790 -10.52074 -10.20548 -9.98181 -9.00900 -8.47103 -8.36344 -5.92613 0.27702 0.77818 1.39965 1.40819 1.51971 1.75999 1.98037 2.11485 2.32776 3.03026 3.23194 3.47976 3.78462 3.83173 3.96313 4.11525 4.19601 4.28850 4.35494 4.41885 4.44332 4.63576 4.67373 4.72453 4.80982 4.83057 4.96196 5.00246 5.07229 5.23842 5.32478 5.42483 5.62661 5.76758 5.89492 5.95106 6.05055 6.36766 6.54367 6.63916 7.15769 7.61040 8.17997 8.73424 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025125 B = 0.004291 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.162189 B = 6524.474755 C = 7076.080963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.483 5.483 4 C 0.058 3.942 5 C -0.171 4.171 6 C -0.046 4.046 7 C 0.444 3.556 8 O -0.628 6.628 9 N -0.576 5.576 10 C -0.334 4.334 11 H 0.075 0.925 12 C -0.012 4.012 13 N -0.921 5.921 14 Si 0.991 3.009 15 H -0.272 1.272 16 H -0.268 1.268 17 H -0.274 1.274 18 C -0.123 4.123 19 C -0.095 4.095 20 C -0.155 4.155 21 C -0.106 4.106 22 C -0.133 4.133 23 C 0.081 3.919 24 H 0.056 0.944 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.187 0.813 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.396 0.604 33 H 0.277 0.723 34 H 0.105 0.895 35 H 0.139 0.861 36 H 0.156 0.844 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 -10.585 8.729 20.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.020 4.020 3 N -0.166 5.166 4 C -0.068 4.068 5 C -0.178 4.178 6 C -0.087 4.087 7 C 0.232 3.768 8 O -0.514 6.514 9 N -0.213 5.213 10 C -0.463 4.463 11 H 0.093 0.907 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.815 3.185 15 H -0.197 1.197 16 H -0.193 1.193 17 H -0.199 1.199 18 C -0.128 4.128 19 C -0.114 4.114 20 C -0.174 4.174 21 C -0.124 4.124 22 C -0.154 4.154 23 C -0.026 4.026 24 H 0.075 0.925 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.121 0.879 28 H 0.111 0.889 29 H 0.204 0.796 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.230 0.770 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.157 0.843 36 H 0.173 0.827 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.305 -11.331 8.972 20.335 hybrid contribution 0.948 0.724 -0.628 1.348 sum -13.357 -10.607 8.344 18.987 Atomic orbital electron populations 1.22128 0.93466 1.03937 1.02366 1.22019 0.96132 0.78623 1.05240 1.44110 1.56014 1.12810 1.03704 1.21829 1.01483 0.91092 0.92348 1.19832 1.09374 0.96597 0.91984 1.19760 0.90254 0.98511 1.00147 1.20971 0.90922 0.82823 0.82048 1.90485 1.70133 1.41497 1.49321 1.41967 1.06797 1.30953 1.41622 1.19609 0.83192 1.16550 1.26995 0.90705 1.26007 1.04801 0.94923 0.95465 1.69668 1.38122 1.19064 1.29378 0.85024 0.76984 0.78210 0.78313 1.19691 1.19274 1.19915 1.19386 1.04791 0.95149 0.93485 1.20443 0.99366 0.98013 0.93575 1.20875 1.02902 0.98897 0.94726 1.21139 0.98760 0.92329 1.00220 1.20310 1.05382 1.01231 0.88437 1.18532 1.03266 0.91056 0.89710 0.92526 0.88493 0.92860 0.87892 0.88853 0.79579 0.88701 0.87026 0.76963 0.91321 0.87681 0.84346 0.82665 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 10.24 71.98 0.74 -1.47 16 2 C 0.10 1.76 6.72 86.38 0.58 2.34 16 3 N -0.48 -13.45 2.78 -515.92 -1.43 -14.89 16 4 C 0.06 1.81 11.19 83.00 0.93 2.74 16 5 C -0.17 -6.39 4.81 -18.63 -0.09 -6.48 16 6 C -0.05 -1.75 6.23 29.10 0.18 -1.57 16 7 C 0.44 22.50 7.78 87.66 0.68 23.18 16 8 O -0.63 -37.16 15.61 -3.07 -0.05 -37.20 16 9 N -0.58 -30.94 5.29 -306.98 -1.62 -32.56 16 10 C -0.33 -19.68 9.68 84.04 0.81 -18.87 16 11 H 0.07 4.71 7.16 -2.91 -0.02 4.69 16 12 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 13 N -0.92 -50.98 13.05 21.66 0.28 -50.69 16 14 Si 0.99 44.13 29.55 68.60 2.03 46.16 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 18 C -0.12 -4.65 6.35 -20.20 -0.13 -4.78 16 19 C -0.10 -3.41 10.05 22.23 0.22 -3.18 16 20 C -0.15 -4.44 9.97 22.04 0.22 -4.22 16 21 C -0.11 -2.58 10.01 22.30 0.22 -2.36 16 22 C -0.13 -3.44 10.00 22.37 0.22 -3.21 16 23 C 0.08 2.57 6.81 39.03 0.27 2.83 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 25 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.10 1.50 8.12 -2.39 -0.02 1.48 16 28 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 29 H 0.19 4.65 8.06 -2.91 -0.02 4.62 16 30 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16 31 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 32 H 0.40 20.14 7.90 -92.71 -0.73 19.41 16 33 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.11 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 36 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 37 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -75.71 323.56 4.88 -70.83 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: 0.34 Total: 33.62 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 5.33 Total: -15.27 kcal Atomic # 7 Polarization: -95.37 SS G_CDS: -2.77 Total: -98.14 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -0.05 Total: -37.20 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -75.71 4.88 -70.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299653935.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.956 kcal (2) G-P(sol) polarization free energy of solvation -75.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds