Wall clock time and date at job start Mon Mar 30 2020 02:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.38309 * 119.99889 * 180.02562 * 12 11 10 14 14 N 1.33035 * 118.62246 * 359.73089 * 13 12 11 15 15 C 1.32466 * 121.42480 * 179.75341 * 14 13 12 16 16 N 1.37840 * 120.84214 * 180.28372 * 15 14 13 17 17 C 1.41756 * 118.31473 * 0.50508 * 15 14 13 18 18 C 1.39891 * 122.01375 * 179.72862 * 17 15 14 19 19 C 1.36420 * 119.52316 * 180.02562 * 18 17 15 20 20 C 1.39180 * 120.89152 * 0.02562 * 19 18 17 21 21 C 1.36343 * 121.00851 * 359.95863 * 20 19 18 22 22 C 1.40152 * 119.58759 * 0.03999 * 21 20 19 23 23 N 1.31923 * 118.61843 * 180.02562 * 13 12 11 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 32 32 H 0.96994 * 120.00436 * 180.22929 * 16 15 14 33 33 H 0.97002 * 119.99801 * 0.22562 * 16 15 14 34 34 H 1.07996 * 120.24232 * 0.04683 * 18 17 15 35 35 H 1.08003 * 119.55521 * 180.02562 * 19 18 17 36 36 H 1.08003 * 119.49991 * 180.02562 * 20 19 18 37 37 H 1.07999 * 120.20602 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9710 -7.4046 -0.0019 14 7 0.6576 -7.6161 0.0040 15 6 0.1554 -8.8419 -0.0006 16 7 -1.2076 -9.0472 -0.0002 17 6 1.0553 -9.9372 -0.0012 18 6 0.6096 -11.2632 -0.0003 19 6 1.5207 -12.2786 -0.0004 20 6 2.8869 -12.0129 -0.0008 21 6 3.3532 -10.7317 -0.0019 22 6 2.4447 -9.6645 -0.0019 23 7 2.8521 -8.3864 -0.0020 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.3858 -5.9235 -0.0021 32 1 -1.5621 -9.9500 -0.0003 33 1 -1.8123 -8.2887 0.0002 34 1 -0.4480 -11.4815 0.0001 35 1 1.1771 -13.3025 -0.0001 36 1 3.5884 -12.8340 -0.0012 37 1 4.4161 -10.5403 -0.0026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301879174.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:01 Heat of formation + Delta-G solvation = 58.648205 kcal Electronic energy + Delta-G solvation = -19311.787170 eV Core-core repulsion = 16281.346376 eV Total energy + Delta-G solvation = -3030.440794 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15992 -38.02048 -36.56660 -35.33992 -33.37246 -32.02683 -31.24149 -30.99068 -29.11613 -26.43988 -24.35830 -23.62487 -22.45440 -21.86303 -20.38117 -18.74086 -18.65883 -17.22412 -16.33729 -16.26036 -15.53469 -15.43093 -15.04696 -14.74045 -14.46691 -14.40570 -13.88784 -13.86180 -12.64376 -12.42690 -12.40990 -12.26132 -11.81833 -11.69987 -11.53883 -10.86994 -10.77344 -10.60716 -10.56670 -9.97342 -9.68598 -9.46177 -9.31299 -9.12524 -8.93539 -8.61705 -8.35619 -7.44204 -6.00899 -4.03491 0.53451 0.99540 2.05313 2.92764 3.11697 3.33548 3.37729 3.38958 3.42395 4.28700 4.34104 4.45783 4.52478 4.66431 4.83619 4.97031 5.26166 5.35029 5.36777 5.55670 5.75321 5.83947 5.91971 6.07979 6.18927 6.21284 6.33659 6.57154 6.65310 6.67823 6.83286 6.93439 7.01050 7.22572 7.58277 7.64744 7.77920 7.81670 7.98303 8.39994 8.68031 9.02919 9.60544 11.10454 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.043770 B = 0.002923 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.548217 B = 9577.583415 C =10191.382398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.123 4.123 11 C 0.134 3.866 12 N -0.688 5.688 13 C 0.615 3.385 14 N -0.624 5.624 15 C 0.508 3.492 16 N -0.823 5.823 17 C -0.248 4.248 18 C -0.050 4.050 19 C -0.169 4.169 20 C -0.067 4.067 21 C -0.131 4.131 22 C 0.239 3.761 23 N -0.619 5.619 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.413 0.587 32 H 0.411 0.589 33 H 0.412 0.588 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.310 -25.379 -0.016 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.161 4.161 11 C 0.011 3.989 12 N -0.321 5.321 13 C 0.256 3.744 14 N -0.358 5.358 15 C 0.248 3.752 16 N -0.367 5.367 17 C -0.258 4.258 18 C -0.070 4.070 19 C -0.188 4.188 20 C -0.088 4.088 21 C -0.151 4.151 22 C 0.109 3.891 23 N -0.349 5.349 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.250 0.750 32 H 0.242 0.758 33 H 0.244 0.756 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.140 -24.080 -0.010 24.080 hybrid contribution -0.009 0.178 -0.002 0.178 sum -0.148 -23.902 -0.012 23.902 Atomic orbital electron populations 1.69957 1.06054 1.26758 1.50667 1.25022 0.94863 0.99278 0.95279 0.86638 0.79563 0.83053 0.78633 1.20226 1.21287 1.20232 1.21188 0.93020 0.90969 1.50857 0.92672 1.19001 0.93784 0.90755 0.97565 1.21916 0.99871 0.93304 1.01024 1.21610 0.91352 0.84148 1.01829 1.44597 1.10224 1.00702 1.76614 1.18924 0.83318 0.87048 0.85076 1.67216 1.14957 1.22142 1.31497 1.18253 0.85603 0.87987 0.83361 1.42098 1.02774 1.12111 1.79732 1.18778 0.95108 0.94170 1.17764 1.20572 0.99120 0.91145 0.96213 1.20651 0.93168 0.98947 1.06052 1.20900 0.95665 0.96436 0.95773 1.20579 0.99523 0.90695 1.04350 1.18432 0.89662 0.90834 0.90153 1.68411 1.36126 0.98305 1.32090 0.92912 0.96306 0.96298 0.92683 0.92673 0.91873 0.91878 0.74952 0.75771 0.75641 0.86300 0.85996 0.85641 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.68 4.97 -27.88 -0.14 0.54 16 10 C -0.12 -2.49 5.27 -26.73 -0.14 -2.63 16 11 C 0.13 2.42 5.61 -4.04 -0.02 2.40 16 12 N -0.69 -11.49 5.70 -62.34 -0.36 -11.85 16 13 C 0.62 10.59 8.40 -322.98 -2.71 7.87 16 14 N -0.62 -10.15 9.52 -12.90 -0.12 -10.27 16 15 C 0.51 6.65 7.87 -155.08 -1.22 5.43 16 16 N -0.82 -6.88 8.98 31.45 0.28 -6.60 16 17 C -0.25 -3.15 5.76 -106.66 -0.61 -3.76 16 18 C -0.05 -0.46 9.53 -39.62 -0.38 -0.83 16 19 C -0.17 -1.40 9.96 -39.89 -0.40 -1.79 16 20 C -0.07 -0.59 9.95 -39.91 -0.40 -0.99 16 21 C -0.13 -1.53 10.01 -39.55 -0.40 -1.92 16 22 C 0.24 3.48 6.61 -84.86 -0.56 2.92 16 23 N -0.62 -10.31 10.46 -12.02 -0.13 -10.44 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.41 6.36 8.58 -40.82 -0.35 6.01 16 32 H 0.41 2.06 7.07 -40.82 -0.29 1.77 16 33 H 0.41 3.19 8.95 -40.82 -0.37 2.83 16 34 H 0.12 0.68 6.57 -52.49 -0.34 0.33 16 35 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 317.54 15.07 4.79 4.79 Total: -1.00 -33.44 317.54 -11.90 -45.34 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.70 Total: 4.82 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -7.39 Total: -6.30 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: 0.41 Total: -65.32 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.44 -11.90 -45.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301879174.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.988 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds