Wall clock time and date at job start Mon Mar 30 2020 02:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.38309 * 119.99889 * 180.02562 * 12 11 10 14 14 N 1.33035 * 118.62246 * 359.73089 * 13 12 11 15 15 C 1.32466 * 121.42480 * 179.75341 * 14 13 12 16 16 N 1.37840 * 120.84214 * 180.28372 * 15 14 13 17 17 C 1.41756 * 118.31473 * 0.50508 * 15 14 13 18 18 C 1.39891 * 122.01375 * 179.72862 * 17 15 14 19 19 C 1.36420 * 119.52316 * 180.02562 * 18 17 15 20 20 C 1.39180 * 120.89152 * 0.02562 * 19 18 17 21 21 C 1.36343 * 121.00851 * 359.95863 * 20 19 18 22 22 C 1.40152 * 119.58759 * 0.03999 * 21 20 19 23 23 N 1.31923 * 118.61843 * 180.02562 * 13 12 11 24 24 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 26 26 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 27 27 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 28 28 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 29 29 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 30 30 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 31 31 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 32 32 H 0.96994 * 120.00436 * 180.22929 * 16 15 14 33 33 H 0.97002 * 119.99801 * 0.22562 * 16 15 14 34 34 H 1.07996 * 120.24232 * 0.04683 * 18 17 15 35 35 H 1.08003 * 119.55521 * 180.02562 * 19 18 17 36 36 H 1.08003 * 119.49991 * 180.02562 * 20 19 18 37 37 H 1.07999 * 120.20602 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9710 -7.4046 -0.0019 14 7 0.6576 -7.6161 0.0040 15 6 0.1554 -8.8419 -0.0006 16 7 -1.2076 -9.0472 -0.0002 17 6 1.0553 -9.9372 -0.0012 18 6 0.6096 -11.2632 -0.0003 19 6 1.5207 -12.2786 -0.0004 20 6 2.8869 -12.0129 -0.0008 21 6 3.3532 -10.7317 -0.0019 22 6 2.4447 -9.6645 -0.0019 23 7 2.8521 -8.3864 -0.0020 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8725 -3.6048 0.8878 28 1 2.8712 -3.6040 -0.8921 29 1 0.8543 -5.0449 0.8894 30 1 0.8525 -5.0447 -0.8905 31 1 3.3858 -5.9235 -0.0021 32 1 -1.5621 -9.9500 -0.0003 33 1 -1.8123 -8.2887 0.0002 34 1 -0.4480 -11.4815 0.0001 35 1 1.1771 -13.3025 -0.0001 36 1 3.5884 -12.8340 -0.0012 37 1 4.4161 -10.5403 -0.0026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301879174.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:01 Heat of formation + Delta-G solvation = 38.036528 kcal Electronic energy + Delta-G solvation = -19312.680960 eV Core-core repulsion = 16281.346376 eV Total energy + Delta-G solvation = -3031.334584 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.12865 -39.01367 -37.60991 -36.64735 -35.19822 -33.27820 -32.70106 -31.82541 -30.25699 -28.18492 -25.32082 -25.11937 -23.76820 -22.80409 -22.08461 -19.71293 -19.65375 -18.49698 -18.07760 -17.13168 -16.68713 -16.68167 -16.39263 -15.91530 -15.83802 -15.75436 -15.01182 -14.67301 -14.25748 -14.00854 -13.72280 -13.35718 -13.18792 -13.00664 -12.65386 -12.55510 -12.51643 -12.37698 -11.67978 -11.65359 -11.44627 -11.21090 -10.78690 -10.54809 -10.12413 -10.02492 -9.69190 -8.46498 -8.19995 -6.31039 -0.32452 0.05589 1.12684 1.40796 1.43905 1.51719 1.88777 2.24369 2.38499 2.44111 3.13455 3.28269 3.40585 3.73732 3.75689 4.11585 4.17896 4.21403 4.24136 4.47376 4.56742 4.58114 4.80794 4.96984 5.03677 5.12532 5.16035 5.33626 5.36597 5.50297 5.58310 5.71072 5.78969 5.83524 5.89240 6.02391 6.15785 6.23942 6.59441 6.82600 6.85504 7.37993 7.58080 8.91905 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.043770 B = 0.002923 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.548217 B = 9577.583415 C =10191.382398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.105 4.105 11 C 0.158 3.842 12 N -0.692 5.692 13 C 0.596 3.404 14 N -0.656 5.656 15 C 0.499 3.501 16 N -0.799 5.799 17 C -0.258 4.258 18 C -0.051 4.051 19 C -0.158 4.158 20 C -0.053 4.053 21 C -0.155 4.155 22 C 0.199 3.801 23 N -0.641 5.641 24 H 0.264 0.736 25 H -0.005 1.005 26 H -0.005 1.005 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.416 0.584 32 H 0.428 0.572 33 H 0.417 0.583 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 -27.903 -0.017 27.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.080 0.920 9 C -0.008 4.008 10 C -0.143 4.143 11 C 0.033 3.967 12 N -0.328 5.328 13 C 0.237 3.763 14 N -0.393 5.393 15 C 0.239 3.761 16 N -0.344 5.344 17 C -0.268 4.268 18 C -0.072 4.072 19 C -0.177 4.177 20 C -0.073 4.073 21 C -0.175 4.175 22 C 0.072 3.928 23 N -0.373 5.373 24 H 0.073 0.927 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.254 0.746 32 H 0.263 0.737 33 H 0.249 0.751 34 H 0.174 0.826 35 H 0.179 0.821 36 H 0.178 0.822 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.039 -26.708 -0.011 26.708 hybrid contribution -0.123 0.688 -0.001 0.699 sum -0.162 -26.020 -0.012 26.020 Atomic orbital electron populations 1.70094 1.07790 1.27875 1.51540 1.25985 0.95788 1.03380 0.94702 0.85489 0.78254 0.78051 0.79185 1.19173 1.20829 1.19185 1.21652 0.93638 0.92228 1.50741 0.91988 1.18879 0.94208 0.92436 0.95257 1.21625 0.98661 0.92448 1.01580 1.21121 0.90962 0.83790 1.00794 1.44299 1.09897 1.00513 1.78124 1.19031 0.84037 0.87027 0.86232 1.67191 1.14691 1.23962 1.33443 1.18567 0.87177 0.87478 0.82916 1.42058 1.01069 1.13465 1.77835 1.19016 0.94316 0.95721 1.17706 1.21017 1.01464 0.89536 0.95134 1.21184 0.92597 1.00626 1.03336 1.21364 0.96999 0.96057 0.92890 1.20755 0.99378 0.91353 1.06005 1.18941 0.91433 0.90633 0.91814 1.68348 1.36613 0.99323 1.32992 0.92726 0.98633 0.98628 0.92040 0.92026 0.92946 0.92942 0.74592 0.73661 0.75120 0.82581 0.82074 0.82217 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.54 -31.28 9.11 25.60 0.23 -31.05 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.60 4.97 29.85 0.15 1.74 16 10 C -0.11 -4.39 5.27 30.59 0.16 -4.23 16 11 C 0.16 5.98 5.61 86.38 0.48 6.47 16 12 N -0.69 -24.29 5.70 -351.15 -2.00 -26.29 16 13 C 0.60 21.46 8.40 261.55 2.20 23.65 16 14 N -0.66 -22.07 9.52 -194.74 -1.85 -23.92 16 15 C 0.50 12.86 7.87 134.09 1.05 13.91 16 16 N -0.80 -12.11 8.98 -54.42 -0.49 -12.60 16 17 C -0.26 -6.26 5.76 -21.18 -0.12 -6.38 16 18 C -0.05 -0.76 9.53 22.25 0.21 -0.54 16 19 C -0.16 -1.90 9.96 22.07 0.22 -1.68 16 20 C -0.05 -0.76 9.95 22.05 0.22 -0.54 16 21 C -0.15 -3.47 10.01 22.29 0.22 -3.24 16 22 C 0.20 5.81 6.61 40.08 0.27 6.08 16 23 N -0.64 -22.27 10.46 -191.93 -2.01 -24.27 16 24 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 25 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 27 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.42 13.45 8.58 -92.71 -0.80 12.66 16 32 H 0.43 3.05 7.07 -92.71 -0.66 2.39 16 33 H 0.42 6.00 8.95 -92.71 -0.83 5.17 16 34 H 0.16 1.03 6.57 -2.91 -0.02 1.01 16 35 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 36 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 37 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -75.50 317.54 0.56 -74.94 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -1.16 Total: 17.88 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 5.76 Total: 4.60 kcal Atomic # 7 Polarization: -138.01 SS G_CDS: -6.07 Total: -144.08 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -75.50 0.56 -74.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301879174.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.974 kcal (2) G-P(sol) polarization free energy of solvation -75.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds