Wall clock time and date at job start Mon Mar 30 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31641 * 1 3 3 Si 1.86802 * 119.99876 * 2 1 4 4 H 1.48502 * 109.47154 * 270.00233 * 3 2 1 5 5 H 1.48503 * 109.46890 * 30.00268 * 3 2 1 6 6 H 1.48500 * 109.47014 * 150.00311 * 3 2 1 7 7 C 1.38793 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00180 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00098 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00038 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47636 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47720 * 179.97438 * 12 11 10 14 14 C 1.46900 * 111.00072 * 184.75927 * 13 12 11 15 15 C 1.50696 * 110.43378 * 293.90765 * 14 13 12 16 16 N 1.34779 * 120.00331 * 326.12079 * 15 14 13 17 17 O 1.21286 * 120.00014 * 146.11604 * 15 14 13 18 18 C 1.54891 * 110.48309 * 171.22793 * 14 13 12 19 19 C 1.54888 * 102.74593 * 203.37982 * 18 14 13 20 20 C 1.54267 * 104.19899 * 37.93728 * 19 18 14 21 21 C 1.53880 * 106.59682 * 336.39397 * 20 19 18 22 22 H 0.96993 * 119.99747 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47731 * 59.99520 * 10 9 7 24 24 H 1.09011 * 109.46954 * 299.99587 * 10 9 7 25 25 H 1.08998 * 109.47592 * 59.99504 * 11 10 9 26 26 H 1.09002 * 109.47233 * 299.99579 * 11 10 9 27 27 H 1.09000 * 109.47230 * 59.99403 * 12 11 10 28 28 H 1.09006 * 109.47271 * 300.00143 * 12 11 10 29 29 H 1.00904 * 110.99479 * 60.80815 * 13 12 11 30 30 H 0.97006 * 119.99860 * 355.11567 * 16 15 14 31 31 H 0.96996 * 120.00033 * 175.12999 * 16 15 14 32 32 H 1.08993 * 110.75968 * 85.06493 * 18 14 13 33 33 H 1.09004 * 110.75483 * 321.69120 * 18 14 13 34 34 H 1.09001 * 110.48542 * 279.26550 * 19 18 14 35 35 H 1.08993 * 110.48977 * 156.62118 * 19 18 14 36 36 H 1.08997 * 110.03005 * 95.67537 * 20 19 18 37 37 H 1.09000 * 110.03752 * 217.05812 * 20 19 18 38 38 H 1.08998 * 110.02822 * 119.28461 * 21 20 19 39 39 H 1.09001 * 110.02690 * 240.70888 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5480 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9795 -5.3242 -0.0012 12 6 3.1515 -6.3077 -0.0018 13 7 2.6364 -7.6834 -0.0018 14 6 3.7318 -8.6557 0.1113 15 6 4.6026 -8.6126 -1.1178 16 7 4.0564 -8.3517 -2.3220 17 8 5.7952 -8.8125 -1.0234 18 6 3.1698 -10.0822 0.3312 19 6 4.3523 -10.8139 1.0134 20 6 4.9644 -9.7522 1.9503 21 6 4.5698 -8.3799 1.3767 22 1 -0.4849 0.8400 0.0004 23 1 3.1247 -3.7313 0.8894 24 1 3.1246 -3.7313 -0.8907 25 1 1.3711 -5.4840 -0.8913 26 1 1.3707 -5.4846 0.8886 27 1 3.7603 -6.1480 0.8881 28 1 3.7600 -6.1472 -0.8918 29 1 2.0790 -7.8608 -0.8240 30 1 3.0944 -8.2619 -2.4090 31 1 4.6251 -8.2540 -3.1016 32 1 2.9230 -10.5512 -0.6212 33 1 2.3001 -10.0578 0.9879 34 1 5.0828 -11.1336 0.2703 35 1 3.9924 -11.6675 1.5877 36 1 4.5619 -9.8659 2.9568 37 1 6.0497 -9.8518 1.9690 38 1 3.9759 -7.8277 2.1050 39 1 5.4638 -7.8131 1.1165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309529862.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:09 Heat of formation + Delta-G solvation = -63.309082 kcal Electronic energy + Delta-G solvation = -18825.249436 eV Core-core repulsion = 15892.671377 eV Total energy + Delta-G solvation = -2932.578059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76801 -37.43095 -35.76003 -33.85219 -32.44697 -31.94177 -29.06420 -27.74503 -25.66249 -24.40591 -23.07369 -21.48156 -20.34936 -19.35080 -18.01994 -17.47257 -17.06913 -15.83515 -15.45987 -15.43385 -14.97416 -14.80495 -14.41924 -14.01356 -13.85012 -13.27608 -13.09085 -12.46171 -12.35543 -11.78153 -11.64112 -11.53998 -11.35429 -11.18851 -11.10148 -11.06780 -10.80591 -10.66508 -10.59544 -10.55929 -10.28023 -9.93094 -9.54915 -9.06522 -8.62807 -8.31766 -6.53729 -6.23633 -3.93905 2.36629 3.17703 3.21223 3.22279 3.28767 3.51169 3.91112 4.22049 4.26271 4.37980 4.61740 4.90411 5.11345 5.12903 5.23976 5.26455 5.32141 5.42500 5.45263 5.48055 5.56325 5.66184 5.73545 5.81617 5.88860 5.93340 6.01549 6.07833 6.19452 6.28651 6.46498 6.55193 6.65494 6.79739 7.00059 7.16470 7.60059 7.98915 8.36053 9.22888 10.84545 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034995 B = 0.003226 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.930572 B = 8678.024292 C = 8744.970091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.072 0.928 9 S -0.131 6.131 10 C -0.113 4.113 11 C -0.092 4.092 12 C 0.054 3.946 13 N -0.664 5.664 14 C 0.092 3.908 15 C 0.499 3.501 16 N -0.857 5.857 17 O -0.537 6.537 18 C -0.103 4.103 19 C -0.124 4.124 20 C -0.117 4.117 21 C -0.102 4.102 22 H 0.267 0.733 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.031 0.969 29 H 0.339 0.661 30 H 0.399 0.601 31 H 0.401 0.599 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.788 -20.408 -0.986 21.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.665 4.665 8 H 0.090 0.910 9 S 0.098 5.902 10 C -0.263 4.263 11 C -0.131 4.131 12 C -0.076 4.076 13 N -0.296 5.296 14 C -0.003 4.003 15 C 0.282 3.718 16 N -0.422 5.422 17 O -0.412 6.412 18 C -0.141 4.141 19 C -0.162 4.162 20 C -0.155 4.155 21 C -0.140 4.140 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.158 0.842 30 H 0.228 0.772 31 H 0.232 0.768 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.123 -20.620 -0.047 21.247 hybrid contribution 1.999 1.571 -1.483 2.943 sum 7.121 -19.049 -1.530 20.394 Atomic orbital electron populations 1.70024 1.05905 1.27324 1.47297 1.25012 0.95083 0.99081 0.94597 0.86171 0.79479 0.81555 0.78358 1.20293 1.20730 1.19671 1.22696 0.94526 0.90828 1.58455 0.90993 1.84604 1.09420 0.99375 1.96851 1.23225 1.02916 0.97338 1.02779 1.21218 0.96697 0.92004 1.03213 1.22199 0.97629 0.86637 1.01144 1.60674 1.20539 1.02465 1.45965 1.22183 0.90464 0.94799 0.92825 1.21656 0.89315 0.75034 0.85823 1.43951 1.12060 1.75586 1.10595 1.90717 1.16010 1.48107 1.86346 1.22508 0.99092 0.91279 1.01253 1.22337 0.97050 0.97962 0.98823 1.22028 1.00876 0.93814 0.98748 1.22107 0.98983 0.98260 0.94652 0.92307 0.92086 0.92414 0.91788 0.90525 0.90349 0.95048 0.84211 0.77227 0.76780 0.91661 0.88847 0.91504 0.91212 0.91566 0.91592 0.89662 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.83 9.50 30.94 0.29 -14.53 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.13 -3.38 21.44 -107.50 -2.30 -5.69 16 10 C -0.11 -2.25 5.67 37.15 0.21 -2.04 16 11 C -0.09 -1.42 5.52 -26.74 -0.15 -1.57 16 12 C 0.05 0.68 5.12 -3.83 -0.02 0.66 16 13 N -0.66 -6.75 5.98 -99.45 -0.59 -7.34 16 14 C 0.09 0.93 0.75 -131.10 -0.10 0.84 16 15 C 0.50 5.72 5.77 -10.99 -0.06 5.65 16 16 N -0.86 -7.07 8.46 31.22 0.26 -6.81 16 17 O -0.54 -8.14 16.73 5.55 0.09 -8.05 16 18 C -0.10 -0.86 6.06 -24.74 -0.15 -1.01 16 19 C -0.12 -1.07 6.59 -25.07 -0.17 -1.23 16 20 C -0.12 -1.10 6.80 -25.61 -0.17 -1.28 16 21 C -0.10 -1.12 4.38 -25.61 -0.11 -1.23 16 22 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 24 H 0.06 1.14 8.14 -51.91 -0.42 0.72 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.08 1.04 6.54 -51.93 -0.34 0.70 16 28 H 0.03 0.41 7.26 -51.93 -0.38 0.03 16 29 H 0.34 2.83 7.29 -39.29 -0.29 2.54 16 30 H 0.40 2.39 7.29 -40.82 -0.30 2.09 16 31 H 0.40 3.00 8.93 -40.82 -0.36 2.64 16 32 H 0.06 0.48 8.04 -51.93 -0.42 0.06 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.94 7.46 -51.93 -0.39 0.55 16 39 H 0.07 0.91 7.35 -51.93 -0.38 0.52 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -33.07 327.91 -8.61 -41.68 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -6.20 Total: 3.74 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -0.52 Total: -13.82 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.40 Total: -39.34 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.05 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.30 Total: -5.69 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.07 -8.61 -41.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309529862.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.629 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds