Wall clock time and date at job start Mon Mar 30 2020 02:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31641 * 1 3 3 Si 1.86802 * 119.99876 * 2 1 4 4 H 1.48502 * 109.47154 * 270.00233 * 3 2 1 5 5 H 1.48503 * 109.46890 * 30.00268 * 3 2 1 6 6 H 1.48500 * 109.47014 * 150.00311 * 3 2 1 7 7 C 1.38793 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00180 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00098 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00038 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47636 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47720 * 179.97438 * 12 11 10 14 14 C 1.46900 * 111.00072 * 184.75927 * 13 12 11 15 15 C 1.50696 * 110.43378 * 293.90765 * 14 13 12 16 16 N 1.34779 * 120.00331 * 326.12079 * 15 14 13 17 17 O 1.21286 * 120.00014 * 146.11604 * 15 14 13 18 18 C 1.54891 * 110.48309 * 171.22793 * 14 13 12 19 19 C 1.54888 * 102.74593 * 203.37982 * 18 14 13 20 20 C 1.54267 * 104.19899 * 37.93728 * 19 18 14 21 21 C 1.53880 * 106.59682 * 336.39397 * 20 19 18 22 22 H 0.96993 * 119.99747 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47731 * 59.99520 * 10 9 7 24 24 H 1.09011 * 109.46954 * 299.99587 * 10 9 7 25 25 H 1.08998 * 109.47592 * 59.99504 * 11 10 9 26 26 H 1.09002 * 109.47233 * 299.99579 * 11 10 9 27 27 H 1.09000 * 109.47230 * 59.99403 * 12 11 10 28 28 H 1.09006 * 109.47271 * 300.00143 * 12 11 10 29 29 H 1.00904 * 110.99479 * 60.80815 * 13 12 11 30 30 H 0.97006 * 119.99860 * 355.11567 * 16 15 14 31 31 H 0.96996 * 120.00033 * 175.12999 * 16 15 14 32 32 H 1.08993 * 110.75968 * 85.06493 * 18 14 13 33 33 H 1.09004 * 110.75483 * 321.69120 * 18 14 13 34 34 H 1.09001 * 110.48542 * 279.26550 * 19 18 14 35 35 H 1.08993 * 110.48977 * 156.62118 * 19 18 14 36 36 H 1.08997 * 110.03005 * 95.67537 * 20 19 18 37 37 H 1.09000 * 110.03752 * 217.05812 * 20 19 18 38 38 H 1.08998 * 110.02822 * 119.28461 * 21 20 19 39 39 H 1.09001 * 110.02690 * 240.70888 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5480 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9795 -5.3242 -0.0012 12 6 3.1515 -6.3077 -0.0018 13 7 2.6364 -7.6834 -0.0018 14 6 3.7318 -8.6557 0.1113 15 6 4.6026 -8.6126 -1.1178 16 7 4.0564 -8.3517 -2.3220 17 8 5.7952 -8.8125 -1.0234 18 6 3.1698 -10.0822 0.3312 19 6 4.3523 -10.8139 1.0134 20 6 4.9644 -9.7522 1.9503 21 6 4.5698 -8.3799 1.3767 22 1 -0.4849 0.8400 0.0004 23 1 3.1247 -3.7313 0.8894 24 1 3.1246 -3.7313 -0.8907 25 1 1.3711 -5.4840 -0.8913 26 1 1.3707 -5.4846 0.8886 27 1 3.7603 -6.1480 0.8881 28 1 3.7600 -6.1472 -0.8918 29 1 2.0790 -7.8608 -0.8240 30 1 3.0944 -8.2619 -2.4090 31 1 4.6251 -8.2540 -3.1016 32 1 2.9230 -10.5512 -0.6212 33 1 2.3001 -10.0578 0.9879 34 1 5.0828 -11.1336 0.2703 35 1 3.9924 -11.6675 1.5877 36 1 4.5619 -9.8659 2.9568 37 1 6.0497 -9.8518 1.9690 38 1 3.9759 -7.8277 2.1050 39 1 5.4638 -7.8131 1.1165 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309529862.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:09 Heat of formation + Delta-G solvation = -87.820213 kcal Electronic energy + Delta-G solvation = -18826.312318 eV Core-core repulsion = 15892.671377 eV Total energy + Delta-G solvation = -2933.640941 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.63270 -38.33851 -36.73364 -34.80981 -34.59905 -33.04789 -29.83129 -28.74653 -27.76050 -25.62811 -23.89360 -22.67616 -21.19281 -20.19485 -19.57205 -18.79982 -17.93750 -16.89892 -16.75579 -16.52336 -16.35883 -16.19729 -15.52562 -15.35786 -14.86108 -14.76297 -14.02317 -13.88415 -13.66404 -13.22308 -12.94432 -12.84285 -12.60640 -12.52907 -12.37255 -12.09548 -12.07784 -11.89759 -11.78541 -11.40235 -11.32585 -11.22940 -11.14607 -10.74957 -10.32165 -9.53730 -8.65560 -8.37989 -6.13446 1.31078 1.38439 1.47578 1.48537 1.74144 2.27669 2.41544 2.94632 2.96211 3.33117 3.49235 3.63635 3.87159 4.00385 4.14751 4.24165 4.32209 4.40663 4.48974 4.53362 4.60232 4.76583 4.78016 4.82731 4.87896 5.04073 5.09878 5.17006 5.20565 5.23315 5.33309 5.39332 5.47321 5.69980 5.85475 6.17526 6.21109 6.41476 7.04635 7.19480 8.71264 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034995 B = 0.003226 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.930572 B = 8678.024292 C = 8744.970091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.017 3.983 3 Si 0.991 3.009 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.070 0.930 9 S -0.188 6.188 10 C -0.091 4.091 11 C -0.079 4.079 12 C 0.067 3.933 13 N -0.656 5.656 14 C 0.095 3.905 15 C 0.495 3.505 16 N -0.842 5.842 17 O -0.580 6.580 18 C -0.097 4.097 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.106 4.106 22 H 0.272 0.728 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.353 0.647 30 H 0.412 0.588 31 H 0.407 0.593 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.083 0.917 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.819 -21.149 -1.219 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.188 4.188 3 Si 0.814 3.186 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.689 4.689 8 H 0.088 0.912 9 S 0.041 5.959 10 C -0.241 4.241 11 C -0.118 4.118 12 C -0.063 4.063 13 N -0.289 5.289 14 C 0.000 4.000 15 C 0.278 3.722 16 N -0.407 5.407 17 O -0.458 6.458 18 C -0.135 4.135 19 C -0.160 4.160 20 C -0.155 4.155 21 C -0.144 4.144 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.174 0.826 30 H 0.243 0.757 31 H 0.238 0.762 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.114 -21.372 -0.311 21.977 hybrid contribution 1.993 1.732 -1.427 3.002 sum 7.107 -19.640 -1.738 20.958 Atomic orbital electron populations 1.70144 1.07575 1.28556 1.47945 1.26028 0.96027 1.02986 0.93767 0.85053 0.78178 0.76573 0.78840 1.19258 1.19808 1.18935 1.23051 0.94686 0.92304 1.58895 0.91215 1.84543 1.13616 1.00771 1.97006 1.23172 1.00259 0.98046 1.02585 1.21086 0.97555 0.89706 1.03464 1.21923 0.96115 0.87428 1.00865 1.60589 1.20418 1.01061 1.46855 1.22192 0.90081 0.95808 0.91922 1.21906 0.88846 0.74558 0.86851 1.43845 1.12936 1.73980 1.09932 1.90703 1.17767 1.50314 1.87008 1.22529 0.99078 0.89639 1.02234 1.22331 0.96783 0.98356 0.98492 1.22040 1.00472 0.93268 0.99715 1.22111 0.98174 0.98912 0.95189 0.91918 0.92402 0.92336 0.90867 0.90947 0.91039 0.95133 0.82632 0.75693 0.76155 0.90213 0.87827 0.92946 0.89160 0.90133 0.92598 0.89810 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.38 13.22 21.65 0.29 -54.10 16 2 C 0.02 0.97 5.49 84.85 0.47 1.44 16 3 Si 0.99 43.96 29.55 68.60 2.03 45.98 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.54 -31.32 9.50 67.95 0.65 -30.68 16 8 H 0.07 3.92 7.80 -2.91 -0.02 3.89 16 9 S -0.19 -9.85 21.44 -56.49 -1.21 -11.06 16 10 C -0.09 -3.58 5.67 71.98 0.41 -3.17 16 11 C -0.08 -2.32 5.52 30.59 0.17 -2.16 16 12 C 0.07 1.60 5.12 86.30 0.44 2.04 16 13 N -0.66 -11.86 5.98 -468.57 -2.80 -14.66 16 14 C 0.09 1.77 0.75 3.85 0.00 1.77 16 15 C 0.50 10.76 5.77 87.66 0.51 11.27 16 16 N -0.84 -12.33 8.46 -173.53 -1.47 -13.80 16 17 O -0.58 -17.52 16.73 -3.05 -0.05 -17.57 16 18 C -0.10 -1.37 6.06 31.89 0.19 -1.18 16 19 C -0.12 -1.88 6.59 31.67 0.21 -1.67 16 20 C -0.12 -2.10 6.80 31.32 0.21 -1.89 16 21 C -0.11 -2.25 4.38 31.32 0.14 -2.12 16 22 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 23 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 24 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.07 1.83 6.54 -2.39 -0.02 1.82 16 28 H 0.03 0.74 7.26 -2.38 -0.02 0.72 16 29 H 0.35 4.83 7.29 -89.69 -0.65 4.17 16 30 H 0.41 3.86 7.29 -92.70 -0.68 3.18 16 31 H 0.41 5.43 8.93 -92.71 -0.83 4.61 16 32 H 0.08 0.92 8.04 -2.39 -0.02 0.90 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.78 7.46 -2.39 -0.02 1.76 16 39 H 0.05 1.25 7.35 -2.39 -0.02 1.23 16 Total: -1.00 -71.93 327.91 -0.92 -72.85 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -1.09 Total: 18.69 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 3.39 Total: -26.34 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -3.98 Total: -82.56 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.05 Total: -17.57 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -9.85 SS G_CDS: -1.21 Total: -11.06 kcal Total: -71.93 -0.92 -72.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309529862.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.969 kcal (2) G-P(sol) polarization free energy of solvation -71.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds