Wall clock time and date at job start Mon Mar 30 2020 01:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46850 * 2 1 4 4 C 1.38157 * 125.60911 * 94.59187 * 3 2 1 5 5 C 1.46901 * 125.44142 * 359.75658 * 4 3 2 6 6 O 1.21704 * 119.99600 * 355.14241 * 5 4 3 7 7 N 1.34771 * 119.99904 * 175.14615 * 5 4 3 8 8 C 1.46491 * 120.00562 * 356.14519 * 7 5 4 9 9 C 1.36817 * 119.99720 * 176.14338 * 7 5 4 10 10 H 1.08004 * 119.99868 * 21.81715 * 9 7 5 11 11 C 1.39057 * 119.99834 * 201.81753 * 9 7 5 12 12 N 1.31356 * 120.00290 * 15.45848 * 11 9 7 13 13 Si 1.86797 * 119.99831 * 195.45944 * 11 9 7 14 14 H 1.48503 * 109.47556 * 89.99990 * 13 11 9 15 15 H 1.48501 * 109.47462 * 209.99943 * 13 11 9 16 16 H 1.48498 * 109.47285 * 330.00013 * 13 11 9 17 17 C 1.36009 * 109.11801 * 180.02562 * 4 3 2 18 18 C 1.41542 * 107.72276 * 359.97438 * 17 4 3 19 19 C 1.40131 * 133.36273 * 179.97438 * 18 17 4 20 20 C 1.36441 * 119.82882 * 179.97438 * 19 18 17 21 21 C 1.38937 * 120.61075 * 0.02562 * 20 19 18 22 22 C 1.37695 * 120.65606 * 359.97438 * 21 20 19 23 23 C 1.37533 * 125.61188 * 274.61534 * 3 2 1 24 24 H 1.09005 * 109.46743 * 185.00143 * 1 2 3 25 25 H 1.08998 * 109.47021 * 304.99839 * 1 2 3 26 26 H 1.08998 * 109.47001 * 65.00205 * 1 2 3 27 27 H 1.08998 * 109.47102 * 240.00504 * 2 1 3 28 28 H 1.09003 * 109.47518 * 120.00207 * 2 1 3 29 29 H 1.08996 * 109.47353 * 65.17522 * 8 7 5 30 30 H 1.08998 * 109.47752 * 185.18424 * 8 7 5 31 31 H 1.09003 * 109.47214 * 305.18342 * 8 7 5 32 32 H 0.96998 * 120.00226 * 180.02562 * 12 11 9 33 33 H 1.08001 * 126.14045 * 179.97438 * 17 4 3 34 34 H 1.07997 * 120.08856 * 0.02562 * 19 18 17 35 35 H 1.07991 * 119.69696 * 180.02562 * 20 19 18 36 36 H 1.08004 * 119.67273 * 180.02562 * 21 20 19 37 37 H 1.07995 * 120.09946 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3712 2.1097 1.1196 5 6 2.3123 1.6246 2.5050 6 8 1.8448 0.5270 2.7459 7 7 2.7758 2.3949 3.5090 8 6 3.4149 3.6791 3.2119 9 6 2.6493 1.9775 4.8058 10 1 2.5169 0.9283 5.0249 11 6 2.6912 2.9043 5.8417 12 7 2.5464 4.1842 5.5842 13 14 2.9535 2.3291 7.5994 14 1 4.4077 2.2999 7.8990 15 1 2.2746 3.2637 8.5327 16 1 2.3868 0.9664 7.7641 17 6 2.7761 3.3498 0.7348 18 6 2.6797 3.4161 -0.6757 19 6 2.9543 4.4213 -1.6127 20 6 2.7578 4.1824 -2.9416 21 6 2.2865 2.9500 -3.3767 22 6 2.0093 1.9464 -2.4757 23 6 2.2004 2.1663 -1.1145 24 1 -0.3633 -1.0238 0.0896 25 1 -0.3633 0.5894 0.8418 26 1 -0.3633 0.4343 -0.9314 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.6826 4.3565 2.7727 30 1 3.8045 4.1128 4.1329 31 1 4.2334 3.5237 2.5090 32 1 2.5760 4.8307 6.3067 33 1 3.1112 4.1417 1.3883 34 1 3.3214 5.3823 -1.2839 35 1 2.9705 4.9584 -3.6618 36 1 2.1368 2.7772 -4.4323 37 1 1.6429 0.9920 -2.8238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334231300.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:23 Heat of formation + Delta-G solvation = 54.058661 kcal Electronic energy + Delta-G solvation = -20856.131385 eV Core-core repulsion = 17793.198822 eV Total energy + Delta-G solvation = -3062.932563 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.17638 -38.35613 -36.57661 -34.96807 -33.62513 -31.77810 -30.75765 -28.89216 -28.38556 -26.34342 -25.08086 -23.40852 -22.60797 -21.07568 -20.28059 -19.03597 -17.23562 -16.52144 -16.01951 -15.83918 -15.04549 -14.82924 -14.28493 -14.11952 -13.92385 -13.75936 -13.52012 -13.16809 -12.83468 -12.47669 -12.27310 -11.92550 -11.83713 -11.47766 -11.40962 -11.26053 -10.84446 -10.83327 -10.75625 -10.50248 -10.43488 -10.12777 -9.38169 -9.03281 -8.57851 -7.86706 -7.72718 -7.24479 -6.48822 -4.01110 1.25867 1.95521 2.73288 3.09251 3.13887 3.18498 3.24656 4.01964 4.17799 4.30986 4.75427 4.98021 5.01401 5.05458 5.23378 5.35172 5.41930 5.52155 5.62912 5.69827 5.74371 5.90106 6.00723 6.10768 6.18972 6.35581 6.36998 6.39888 6.42200 6.65508 6.73951 6.89729 7.12322 7.13562 7.22761 7.43574 7.56020 7.72121 7.99757 8.34537 8.99470 9.22360 9.81557 10.50328 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027303 B = 0.005370 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.295005 B = 5213.291576 C = 6088.020861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.104 3.896 3 N -0.453 5.453 4 C 0.072 3.928 5 C 0.488 3.512 6 O -0.594 6.594 7 N -0.412 5.412 8 C 0.069 3.931 9 C -0.299 4.299 10 H 0.105 0.895 11 C 0.029 3.971 12 N -0.866 5.866 13 Si 0.933 3.067 14 H -0.275 1.275 15 H -0.282 1.282 16 H -0.267 1.267 17 C -0.204 4.204 18 C -0.107 4.107 19 C -0.070 4.070 20 C -0.157 4.157 21 C -0.110 4.110 22 C -0.127 4.127 23 C 0.094 3.906 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.036 0.964 32 H 0.272 0.728 33 H 0.175 0.825 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 0.033 -11.996 12.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.017 4.017 3 N -0.134 5.134 4 C -0.039 4.039 5 C 0.277 3.723 6 O -0.482 6.482 7 N -0.127 5.127 8 C -0.074 4.074 9 C -0.427 4.427 10 H 0.123 0.877 11 C -0.175 4.175 12 N -0.505 5.505 13 Si 0.759 3.241 14 H -0.201 1.201 15 H -0.207 1.207 16 H -0.191 1.191 17 C -0.229 4.229 18 C -0.112 4.112 19 C -0.089 4.089 20 C -0.176 4.176 21 C -0.130 4.130 22 C -0.148 4.148 23 C -0.015 4.015 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.192 0.808 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.511 -0.678 -11.649 11.680 hybrid contribution -0.005 -0.049 0.664 0.666 sum 0.506 -0.727 -10.985 11.021 Atomic orbital electron populations 1.22054 0.94957 1.02522 1.02279 1.21894 0.95350 0.80038 1.04452 1.44119 1.53891 1.11794 1.03621 1.20469 1.02871 0.91959 0.88581 1.16968 0.84883 0.87598 0.82803 1.90582 1.51897 1.21744 1.83986 1.43290 1.46903 1.17310 1.05221 1.22516 0.95657 0.85931 1.03292 1.19795 1.47768 0.95070 0.80029 0.87689 1.25421 0.96362 0.94942 1.00795 1.69897 1.45622 1.01291 1.33661 0.85815 0.78629 0.78955 0.80731 1.20068 1.20727 1.19150 1.22208 1.09156 0.97909 0.93676 1.18338 1.05019 0.93807 0.94050 1.20343 0.98771 0.97615 0.92145 1.20480 1.04294 0.97405 0.95433 1.20678 1.00672 0.93246 0.98356 1.19956 1.05530 0.99860 0.89425 1.18399 1.03073 0.91612 0.88423 0.91258 0.91460 0.93042 0.90882 0.86760 0.92676 0.86825 0.94551 0.91708 0.80838 0.86292 0.86648 0.86420 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.10 1.75 6.28 -4.04 -0.03 1.72 16 3 N -0.45 -8.78 2.82 -110.36 -0.31 -9.09 16 4 C 0.07 1.57 6.75 -82.31 -0.56 1.01 16 5 C 0.49 12.32 7.59 -12.76 -0.10 12.23 16 6 O -0.59 -16.13 14.20 5.19 0.07 -16.05 16 7 N -0.41 -10.57 3.01 -123.63 -0.37 -10.94 16 8 C 0.07 1.53 7.43 59.84 0.44 1.98 16 9 C -0.30 -8.08 9.31 -15.02 -0.14 -8.21 16 10 H 0.11 2.95 7.38 -52.48 -0.39 2.57 16 11 C 0.03 0.73 5.02 -17.45 -0.09 0.64 16 12 N -0.87 -22.02 10.55 55.50 0.59 -21.44 16 13 Si 0.93 19.80 29.58 -169.99 -5.03 14.77 16 14 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 15 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 17 C -0.20 -4.03 8.78 -39.12 -0.34 -4.38 16 18 C -0.11 -1.94 6.16 -106.93 -0.66 -2.60 16 19 C -0.07 -1.05 10.06 -39.52 -0.40 -1.45 16 20 C -0.16 -2.06 9.97 -39.97 -0.40 -2.46 16 21 C -0.11 -1.43 10.01 -39.52 -0.40 -1.83 16 22 C -0.13 -1.88 10.00 -39.42 -0.39 -2.27 16 23 C 0.09 1.68 6.81 -83.95 -0.57 1.11 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.11 2.19 6.10 -51.93 -0.32 1.87 16 29 H 0.06 1.19 6.20 -51.93 -0.32 0.87 16 30 H 0.11 2.67 5.30 -51.93 -0.28 2.40 16 31 H 0.04 0.72 6.72 -51.93 -0.35 0.37 16 32 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 33 H 0.17 3.23 3.89 -52.49 -0.20 3.03 16 34 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 304.58 15.07 4.59 4.59 Total: -1.00 -29.75 304.58 -8.07 -37.83 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.37 Total: 6.93 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -3.24 Total: -6.59 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.10 Total: -41.47 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: 0.07 Total: -16.05 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.75 -8.07 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334231300.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.884 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds