Wall clock time and date at job start Mon Mar 30 2020 01:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46850 * 2 1 4 4 C 1.38157 * 125.60911 * 94.59187 * 3 2 1 5 5 C 1.46901 * 125.44142 * 359.75658 * 4 3 2 6 6 O 1.21704 * 119.99600 * 355.14241 * 5 4 3 7 7 N 1.34771 * 119.99904 * 175.14615 * 5 4 3 8 8 C 1.46491 * 120.00562 * 356.14519 * 7 5 4 9 9 C 1.36817 * 119.99720 * 176.14338 * 7 5 4 10 10 H 1.08004 * 119.99868 * 21.81715 * 9 7 5 11 11 C 1.39057 * 119.99834 * 201.81753 * 9 7 5 12 12 N 1.31356 * 120.00290 * 15.45848 * 11 9 7 13 13 Si 1.86797 * 119.99831 * 195.45944 * 11 9 7 14 14 H 1.48503 * 109.47556 * 89.99990 * 13 11 9 15 15 H 1.48501 * 109.47462 * 209.99943 * 13 11 9 16 16 H 1.48498 * 109.47285 * 330.00013 * 13 11 9 17 17 C 1.36009 * 109.11801 * 180.02562 * 4 3 2 18 18 C 1.41542 * 107.72276 * 359.97438 * 17 4 3 19 19 C 1.40131 * 133.36273 * 179.97438 * 18 17 4 20 20 C 1.36441 * 119.82882 * 179.97438 * 19 18 17 21 21 C 1.38937 * 120.61075 * 0.02562 * 20 19 18 22 22 C 1.37695 * 120.65606 * 359.97438 * 21 20 19 23 23 C 1.37533 * 125.61188 * 274.61534 * 3 2 1 24 24 H 1.09005 * 109.46743 * 185.00143 * 1 2 3 25 25 H 1.08998 * 109.47021 * 304.99839 * 1 2 3 26 26 H 1.08998 * 109.47001 * 65.00205 * 1 2 3 27 27 H 1.08998 * 109.47102 * 240.00504 * 2 1 3 28 28 H 1.09003 * 109.47518 * 120.00207 * 2 1 3 29 29 H 1.08996 * 109.47353 * 65.17522 * 8 7 5 30 30 H 1.08998 * 109.47752 * 185.18424 * 8 7 5 31 31 H 1.09003 * 109.47214 * 305.18342 * 8 7 5 32 32 H 0.96998 * 120.00226 * 180.02562 * 12 11 9 33 33 H 1.08001 * 126.14045 * 179.97438 * 17 4 3 34 34 H 1.07997 * 120.08856 * 0.02562 * 19 18 17 35 35 H 1.07991 * 119.69696 * 180.02562 * 20 19 18 36 36 H 1.08004 * 119.67273 * 180.02562 * 21 20 19 37 37 H 1.07995 * 120.09946 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3712 2.1097 1.1196 5 6 2.3123 1.6246 2.5050 6 8 1.8448 0.5270 2.7459 7 7 2.7758 2.3949 3.5090 8 6 3.4149 3.6791 3.2119 9 6 2.6493 1.9775 4.8058 10 1 2.5169 0.9283 5.0249 11 6 2.6912 2.9043 5.8417 12 7 2.5464 4.1842 5.5842 13 14 2.9535 2.3291 7.5994 14 1 4.4077 2.2999 7.8990 15 1 2.2746 3.2637 8.5327 16 1 2.3868 0.9664 7.7641 17 6 2.7761 3.3498 0.7348 18 6 2.6797 3.4161 -0.6757 19 6 2.9543 4.4213 -1.6127 20 6 2.7578 4.1824 -2.9416 21 6 2.2865 2.9500 -3.3767 22 6 2.0093 1.9464 -2.4757 23 6 2.2004 2.1663 -1.1145 24 1 -0.3633 -1.0238 0.0896 25 1 -0.3633 0.5894 0.8418 26 1 -0.3633 0.4343 -0.9314 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.6826 4.3565 2.7727 30 1 3.8045 4.1128 4.1329 31 1 4.2334 3.5237 2.5090 32 1 2.5760 4.8307 6.3067 33 1 3.1112 4.1417 1.3883 34 1 3.3214 5.3823 -1.2839 35 1 2.9705 4.9584 -3.6618 36 1 2.1368 2.7772 -4.4323 37 1 1.6429 0.9920 -2.8238 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334231300.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:22 Heat of formation + Delta-G solvation = 37.807577 kcal Electronic energy + Delta-G solvation = -20856.836085 eV Core-core repulsion = 17793.198822 eV Total energy + Delta-G solvation = -3063.637263 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.57325 -40.13730 -37.87100 -36.85580 -35.07808 -33.64607 -31.96535 -30.30896 -29.76179 -28.09097 -26.90173 -24.72365 -24.10572 -22.37862 -21.65812 -20.64287 -19.15725 -17.90382 -17.68173 -17.25192 -16.73450 -16.36464 -15.87266 -15.62571 -15.40383 -15.25216 -14.91249 -14.50639 -14.28611 -13.99823 -13.74116 -13.60573 -13.26757 -13.14727 -12.94195 -12.60365 -12.54525 -12.19129 -12.16158 -12.08302 -12.02318 -11.61646 -10.92295 -10.65098 -10.50716 -9.78405 -9.06895 -8.57610 -8.41714 -6.05174 -0.05371 0.78344 1.21994 1.41227 1.48402 1.53402 1.74108 2.26619 2.43376 3.01021 3.04250 3.07346 3.73128 3.80400 3.85884 4.12222 4.19150 4.31776 4.36281 4.45662 4.56281 4.59337 4.66526 4.75187 4.83718 4.89323 4.95397 5.02161 5.11164 5.19893 5.31769 5.42747 5.61559 5.74762 5.79462 5.88275 6.05596 6.22046 6.38976 6.45615 7.02412 7.28999 7.88210 8.56942 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027303 B = 0.005370 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.295005 B = 5213.291576 C = 6088.020861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.100 3.900 3 N -0.459 5.459 4 C 0.026 3.974 5 C 0.480 3.520 6 O -0.628 6.628 7 N -0.430 5.430 8 C 0.082 3.918 9 C -0.342 4.342 10 H 0.079 0.921 11 C 0.000 4.000 12 N -0.882 5.882 13 Si 0.998 3.002 14 H -0.262 1.262 15 H -0.270 1.270 16 H -0.275 1.275 17 C -0.190 4.190 18 C -0.140 4.140 19 C -0.076 4.076 20 C -0.150 4.150 21 C -0.090 4.090 22 C -0.140 4.140 23 C 0.083 3.917 24 H 0.092 0.908 25 H 0.026 0.974 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.280 0.720 33 H 0.177 0.823 34 H 0.138 0.862 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.177 1.136 -14.929 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 N -0.140 5.140 4 C -0.085 4.085 5 C 0.271 3.729 6 O -0.519 6.519 7 N -0.145 5.145 8 C -0.061 4.061 9 C -0.470 4.470 10 H 0.097 0.903 11 C -0.202 4.202 12 N -0.520 5.520 13 Si 0.821 3.179 14 H -0.187 1.187 15 H -0.195 1.195 16 H -0.200 1.200 17 C -0.216 4.216 18 C -0.144 4.144 19 C -0.095 4.095 20 C -0.169 4.169 21 C -0.110 4.110 22 C -0.161 4.161 23 C -0.025 4.025 24 H 0.111 0.889 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.126 0.874 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.194 0.806 34 H 0.156 0.844 35 H 0.171 0.829 36 H 0.177 0.823 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.841 0.454 -14.600 14.631 hybrid contribution -0.112 -0.316 1.298 1.341 sum 0.729 0.138 -13.302 13.323 Atomic orbital electron populations 1.21976 0.93945 1.03427 1.01402 1.21978 0.96192 0.79392 1.04486 1.44214 1.54033 1.12394 1.03403 1.20039 1.07136 0.93565 0.87713 1.17542 0.83904 0.87064 0.84396 1.90527 1.53167 1.23121 1.85055 1.43485 1.47664 1.18330 1.05018 1.22461 0.95974 0.84672 1.02967 1.19734 1.51132 0.94511 0.81615 0.90347 1.26183 0.95073 0.94892 1.04077 1.69957 1.45016 1.01912 1.35092 0.84868 0.79098 0.78090 0.75885 1.18688 1.19464 1.19989 1.22308 1.07270 0.96902 0.95166 1.18573 1.06998 0.95358 0.93474 1.20674 0.98480 0.97678 0.92624 1.20981 1.02281 0.98431 0.95169 1.21254 0.97417 0.92219 1.00072 1.20344 1.05976 1.01728 0.88026 1.18869 1.03089 0.91312 0.89251 0.88880 0.95443 0.91140 0.87364 0.90028 0.92425 0.88100 0.92572 0.90955 0.80576 0.84427 0.82922 0.82347 0.84636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 10.24 71.98 0.74 -3.90 16 2 C 0.10 3.43 6.28 86.38 0.54 3.98 16 3 N -0.46 -18.07 2.82 -503.07 -1.42 -19.49 16 4 C 0.03 1.17 6.75 39.90 0.27 1.44 16 5 C 0.48 25.93 7.59 86.51 0.66 26.58 16 6 O -0.63 -36.87 14.20 -4.36 -0.06 -36.94 16 7 N -0.43 -23.36 3.01 -663.26 -2.00 -25.35 16 8 C 0.08 3.76 7.43 127.77 0.95 4.71 16 9 C -0.34 -19.61 9.31 84.11 0.78 -18.83 16 10 H 0.08 4.77 7.38 -2.91 -0.02 4.75 16 11 C 0.00 0.02 5.02 84.96 0.43 0.45 16 12 N -0.88 -45.66 10.55 21.68 0.23 -45.43 16 13 Si 1.00 41.38 29.58 68.60 2.03 43.41 16 14 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 15 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 16 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 17 C -0.19 -7.66 8.78 22.57 0.20 -7.46 16 18 C -0.14 -4.89 6.16 -21.36 -0.13 -5.02 16 19 C -0.08 -2.04 10.06 22.31 0.22 -1.82 16 20 C -0.15 -3.17 9.97 22.02 0.22 -2.95 16 21 C -0.09 -1.85 10.01 22.31 0.22 -1.63 16 22 C -0.14 -3.62 10.00 22.37 0.22 -3.40 16 23 C 0.08 2.87 6.81 39.12 0.27 3.14 16 24 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 25 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 28 H 0.08 3.34 6.10 -2.39 -0.01 3.33 16 29 H 0.06 2.58 6.20 -2.39 -0.01 2.56 16 30 H 0.10 4.90 5.30 -2.39 -0.01 4.89 16 31 H 0.06 2.30 6.72 -2.39 -0.02 2.28 16 32 H 0.28 13.35 8.31 -92.71 -0.77 12.58 16 33 H 0.18 6.70 3.89 -2.91 -0.01 6.69 16 34 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.15 2.15 8.06 -2.92 -0.02 2.12 16 36 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -69.23 304.58 5.46 -63.78 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 1.09 Total: 24.73 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 5.59 Total: -4.71 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -3.19 Total: -90.27 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.06 Total: -36.94 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -69.23 5.46 -63.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334231300.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.584 kcal (2) G-P(sol) polarization free energy of solvation -69.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds